Wall clock time and date at job start Tue Mar 31 2020 21:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.46579 * 2 1 4 4 N 1.46906 * 109.46507 * 119.99385 * 2 1 3 5 5 C 1.46898 * 111.00196 * 275.00132 * 4 2 1 6 6 C 1.52997 * 109.47005 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.47140 * 294.99810 * 6 5 4 8 8 C 1.53006 * 109.47164 * 174.99862 * 6 5 4 9 9 N 1.46500 * 109.47204 * 54.99937 * 6 5 4 10 10 C 1.46505 * 120.00078 * 60.00024 * 9 6 5 11 11 C 1.34771 * 120.00141 * 239.99880 * 9 6 5 12 12 O 1.21281 * 120.00208 * 359.97438 * 11 9 6 13 13 C 1.50699 * 120.00070 * 180.02562 * 11 9 6 14 14 S 1.81001 * 109.47249 * 180.02562 * 13 11 9 15 15 C 1.76192 * 100.00228 * 179.97438 * 14 13 11 16 16 H 1.08003 * 120.00179 * 359.97438 * 15 14 13 17 17 C 1.38804 * 120.00206 * 179.97438 * 15 14 13 18 18 N 1.31625 * 120.00097 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99897 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47265 * 89.99595 * 19 17 15 21 21 H 1.48500 * 109.47133 * 209.99997 * 19 17 15 22 22 H 1.48503 * 109.46760 * 329.99395 * 19 17 15 23 23 C 1.50691 * 109.47491 * 239.99365 * 2 1 3 24 24 N 1.31795 * 119.12746 * 284.73185 * 23 2 1 25 25 C 1.32333 * 120.81954 * 179.75396 * 24 23 2 26 26 C 1.38598 * 119.10379 * 0.51082 * 25 24 23 27 27 C 1.38594 * 118.40118 * 359.74281 * 26 25 24 28 28 N 1.31795 * 119.12084 * 104.99594 * 23 2 1 29 29 H 1.08995 * 109.47651 * 300.00406 * 1 2 3 30 30 H 1.09003 * 109.46982 * 60.00268 * 1 2 3 31 31 H 1.09003 * 109.46579 * 179.97438 * 1 2 3 32 32 H 1.00905 * 110.99574 * 151.05069 * 4 2 1 33 33 H 1.09002 * 109.47308 * 60.00375 * 5 4 2 34 34 H 1.09006 * 109.46694 * 300.00543 * 5 4 2 35 35 H 1.09001 * 109.47002 * 59.99738 * 8 6 5 36 36 H 1.08993 * 109.46955 * 180.02562 * 8 6 5 37 37 H 1.09000 * 109.47050 * 300.00004 * 8 6 5 38 38 H 1.09004 * 109.47130 * 89.99894 * 10 9 6 39 39 H 1.08997 * 109.47212 * 209.99646 * 10 9 6 40 40 H 1.09003 * 109.46772 * 330.00259 * 10 9 6 41 41 H 1.08999 * 109.47401 * 300.00043 * 13 11 9 42 42 H 1.09002 * 109.47014 * 60.00321 * 13 11 9 43 43 H 0.96995 * 120.00141 * 180.02562 * 18 17 15 44 44 H 1.08005 * 120.44622 * 180.27392 * 25 24 23 45 45 H 1.08000 * 120.79873 * 179.77049 * 26 25 24 46 46 H 1.07996 * 120.44931 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0823 0.2227 2.3470 6 6 2.5959 -0.5327 3.5743 7 1 1.8751 -1.3000 3.8566 8 6 2.7798 0.4463 4.7357 9 7 3.8806 -1.1620 3.2582 10 6 5.0195 -0.3366 2.8484 11 6 4.0146 -2.5003 3.3443 12 8 3.0720 -3.1836 3.6839 13 6 5.3362 -3.1476 3.0196 14 16 5.1972 -4.9403 3.2270 15 6 6.8346 -5.4263 2.7946 16 1 7.5626 -4.6802 2.5123 17 6 7.1889 -6.7682 2.8166 18 7 8.4120 -7.1313 2.4931 19 14 5.9296 -8.0588 3.3042 20 1 5.2057 -8.5258 2.0947 21 1 6.6203 -9.2081 3.9424 22 1 4.9618 -7.4684 4.2634 23 6 2.0325 -0.7105 -1.2303 24 7 1.9703 -2.0260 -1.2817 25 6 2.3975 -2.6837 -2.3476 26 6 2.9247 -1.9711 -3.4131 27 6 2.9781 -0.5893 -3.3199 28 7 2.5272 -0.0001 -2.2241 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 2.9173 -1.1204 1.0290 33 1 1.0869 0.6165 2.5526 34 1 2.7588 1.0463 2.1182 35 1 1.8240 0.9146 4.9709 36 1 3.1461 -0.0918 5.6099 37 1 3.5006 1.2137 4.4534 38 1 5.5888 -0.0399 3.7293 39 1 5.6602 -0.9088 2.1775 40 1 4.6568 0.5531 2.3336 41 1 5.6080 -2.9215 1.9885 42 1 6.1041 -2.7623 3.6905 43 1 8.6596 -8.0690 2.5081 44 1 2.3397 -3.7616 -2.3851 45 1 3.2847 -2.4803 -4.2948 46 1 3.3820 -0.0013 -4.1308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482256752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:43 Heat of formation + Delta-G solvation = -2.457646 kcal Electronic energy + Delta-G solvation = -27264.651055 eV Core-core repulsion = 23508.106231 eV Total energy + Delta-G solvation = -3756.544824 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.07001 -41.06917 -38.41451 -36.69610 -34.69731 -34.68381 -33.92567 -32.48630 -30.61523 -30.15165 -27.87832 -27.81409 -26.70530 -25.61310 -25.02848 -22.69950 -21.99880 -20.32928 -19.58746 -18.53174 -18.39117 -18.22267 -17.18850 -17.04695 -16.90083 -16.46457 -16.23587 -16.01245 -15.73853 -15.62505 -14.98208 -14.81973 -14.54869 -14.50348 -14.37604 -14.17254 -13.66403 -13.48280 -13.38996 -13.26761 -13.25170 -13.06081 -13.01475 -12.97903 -12.60034 -12.52363 -12.22294 -11.89334 -11.85266 -11.82690 -11.66628 -11.17932 -10.84989 -10.53343 -10.52422 -10.20799 -9.73220 -9.35081 -9.00292 -8.52614 -6.22978 -0.12389 0.13190 0.97495 1.30284 1.45914 1.53975 1.59385 2.09226 2.24617 2.66306 2.69770 2.78392 2.85742 2.98385 3.42745 3.61608 3.73490 3.92302 3.99058 4.09282 4.16329 4.17711 4.20356 4.24660 4.29776 4.36477 4.38301 4.47940 4.58133 4.67055 4.68603 4.77502 4.82467 4.86138 4.87398 4.93384 5.13867 5.26164 5.30862 5.42691 5.63279 5.69668 5.99405 6.05863 6.09408 6.21428 6.29801 6.92843 7.11354 7.16142 8.59941 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009554 B = 0.003677 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.112004 B = 7613.456796 C = 9516.985420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.159 3.841 3 H 0.079 0.921 4 N -0.682 5.682 5 C 0.056 3.944 6 C 0.136 3.864 7 H 0.077 0.923 8 C -0.149 4.149 9 N -0.603 5.603 10 C 0.069 3.931 11 C 0.535 3.465 12 O -0.555 6.555 13 C -0.104 4.104 14 S -0.173 6.173 15 C -0.528 4.528 16 H 0.060 0.940 17 C 0.049 3.951 18 N -0.916 5.916 19 Si 0.912 3.088 20 H -0.262 1.262 21 H -0.257 1.257 22 H -0.239 1.239 23 C 0.291 3.709 24 N -0.525 5.525 25 C 0.126 3.874 26 C -0.216 4.216 27 C 0.138 3.862 28 N -0.533 5.533 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.334 0.666 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.277 0.723 44 H 0.181 0.819 45 H 0.183 0.817 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.883 21.750 -8.841 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 H 0.097 0.903 4 N -0.314 5.314 5 C -0.074 4.074 6 C 0.033 3.967 7 H 0.095 0.905 8 C -0.208 4.208 9 N -0.337 5.337 10 C -0.074 4.074 11 C 0.322 3.678 12 O -0.433 6.433 13 C -0.255 4.255 14 S 0.054 5.946 15 C -0.676 4.676 16 H 0.078 0.922 17 C -0.156 4.156 18 N -0.554 5.554 19 Si 0.734 3.266 20 H -0.187 1.187 21 H -0.181 1.181 22 H -0.163 1.163 23 C 0.023 3.977 24 N -0.239 5.239 25 C -0.038 4.038 26 C -0.238 4.238 27 C -0.027 4.027 28 N -0.247 5.247 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.153 0.847 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.198 0.802 45 H 0.200 0.800 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -15.072 20.855 -7.391 26.772 hybrid contribution 2.417 -0.346 -1.434 2.832 sum -12.655 20.509 -8.825 25.664 Atomic orbital electron populations 1.21692 0.92008 1.02127 1.02584 1.20226 0.96947 0.94637 0.83343 0.90339 1.60389 1.33997 1.33095 1.03966 1.22454 1.02380 0.93268 0.89256 1.21231 0.84317 0.95844 0.95276 0.90461 1.22033 1.03952 0.98554 0.96246 1.47836 1.13323 1.04762 1.67818 1.22015 0.88120 0.95934 1.01293 1.19908 0.88416 0.82806 0.76665 1.90676 1.41607 1.63150 1.47843 1.23254 0.98994 0.97488 1.05732 1.84741 1.16888 1.02842 1.90174 1.22442 0.96083 0.96489 1.52586 0.92172 1.25512 0.96955 0.99710 0.93470 1.70007 1.19376 1.18629 1.47429 0.85896 0.80148 0.79804 0.80714 1.18673 1.18146 1.16274 1.23393 0.92100 0.87092 0.95099 1.68287 1.17544 1.10511 1.27568 1.23800 0.89772 1.02331 0.87938 1.23317 1.01492 0.96730 1.02237 1.23889 0.90828 0.93293 0.94722 1.68245 1.11982 1.42176 1.02339 0.89986 0.91976 0.93395 0.84740 0.87916 0.92827 0.89293 0.93348 0.90472 0.90651 0.91460 0.88876 0.88017 0.87421 0.91333 0.80228 0.80005 0.77944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.40 71.98 0.68 -1.72 16 2 C 0.16 3.39 3.02 44.17 0.13 3.53 16 3 H 0.08 1.45 7.78 -2.39 -0.02 1.43 16 4 N -0.68 -16.43 6.11 -495.43 -3.03 -19.46 16 5 C 0.06 0.98 4.78 86.30 0.41 1.40 16 6 C 0.14 3.01 2.95 44.99 0.13 3.14 16 7 H 0.08 2.29 6.90 -2.39 -0.02 2.27 16 8 C -0.15 -2.31 9.19 71.98 0.66 -1.65 16 9 N -0.60 -15.62 1.83 -822.57 -1.51 -17.13 16 10 C 0.07 1.26 9.28 127.77 1.19 2.45 16 11 C 0.54 19.81 7.69 87.66 0.67 20.48 16 12 O -0.56 -25.26 15.19 -3.03 -0.05 -25.31 16 13 C -0.10 -4.17 4.71 71.24 0.34 -3.83 16 14 S -0.17 -9.06 18.55 -56.49 -1.05 -10.11 16 15 C -0.53 -31.33 10.04 67.96 0.68 -30.65 16 16 H 0.06 3.76 8.03 -2.91 -0.02 3.73 16 17 C 0.05 2.91 5.50 84.86 0.47 3.38 16 18 N -0.92 -56.16 13.97 21.65 0.30 -55.86 16 19 Si 0.91 45.74 27.74 68.60 1.90 47.64 16 20 H -0.26 -12.81 7.11 99.48 0.71 -12.11 16 21 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.24 -12.06 6.74 99.48 0.67 -11.39 16 23 C 0.29 7.21 6.27 138.75 0.87 8.08 16 24 N -0.53 -14.55 10.04 -187.85 -1.89 -16.44 16 25 C 0.13 2.76 11.30 84.70 0.96 3.71 16 26 C -0.22 -3.32 10.17 22.44 0.23 -3.09 16 27 C 0.14 2.20 11.31 84.70 0.96 3.16 16 28 N -0.53 -11.65 10.32 -187.85 -1.94 -13.58 16 29 H 0.08 1.25 7.45 -2.39 -0.02 1.24 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.33 9.52 7.41 -89.69 -0.67 8.86 16 33 H 0.10 1.47 7.44 -2.39 -0.02 1.45 16 34 H 0.05 0.73 6.79 -2.38 -0.02 0.71 16 35 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.90 7.67 -2.39 -0.02 0.88 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.36 6.44 -2.39 -0.02 1.35 16 40 H 0.09 1.24 6.53 -2.39 -0.02 1.22 16 41 H 0.10 3.87 7.40 -2.40 -0.02 3.85 16 42 H 0.11 4.01 8.11 -2.39 -0.02 3.99 16 43 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 45 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 46 H 0.20 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -80.75 391.45 1.41 -79.34 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.28 Total: 22.52 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 8.37 Total: 8.38 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -8.06 Total: -122.46 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.05 Total: -25.31 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.90 Total: 47.64 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -80.75 1.41 -79.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482256752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.880 kcal (2) G-P(sol) polarization free energy of solvation -80.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds