Wall clock time and date at job start Tue Mar 31 2020 21:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 N 1.46895 * 109.47555 * 185.00353 * 4 2 1 6 6 C 1.46901 * 111.00453 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.46777 * 34.99899 * 6 5 4 8 8 C 1.52995 * 109.47120 * 274.99681 * 6 5 4 9 9 C 1.50700 * 109.47408 * 154.99699 * 6 5 4 10 10 N 1.31801 * 119.11729 * 44.72835 * 9 6 5 11 11 C 1.32338 * 120.81327 * 179.75976 * 10 9 6 12 12 C 1.38603 * 119.10269 * 0.50767 * 11 10 9 13 13 C 1.38597 * 118.40188 * 359.74653 * 12 11 10 14 14 N 1.31794 * 119.12351 * 225.00177 * 9 6 5 15 15 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 16 16 C 1.46497 * 119.99968 * 59.99779 * 15 2 1 17 17 C 1.34774 * 119.99744 * 239.99606 * 15 2 1 18 18 O 1.21283 * 120.00281 * 0.02562 * 17 15 2 19 19 C 1.50699 * 119.99876 * 179.97438 * 17 15 2 20 20 S 1.80997 * 109.47293 * 180.02562 * 19 17 15 21 21 C 1.76204 * 100.00122 * 180.02562 * 20 19 17 22 22 H 1.08003 * 120.00052 * 359.97438 * 21 20 19 23 23 C 1.38802 * 120.00084 * 180.02562 * 21 20 19 24 24 N 1.31629 * 120.00098 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99766 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47072 * 89.99907 * 25 23 21 27 27 H 1.48503 * 109.46773 * 210.00063 * 25 23 21 28 28 H 1.48494 * 109.46968 * 329.99551 * 25 23 21 29 29 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 33 33 H 1.09002 * 109.47196 * 65.00121 * 4 2 1 34 34 H 1.00898 * 111.00074 * 56.04338 * 5 4 2 35 35 H 1.08999 * 109.47390 * 300.00339 * 8 6 5 36 36 H 1.09007 * 109.46881 * 59.99734 * 8 6 5 37 37 H 1.08996 * 109.47232 * 179.97438 * 8 6 5 38 38 H 1.08000 * 120.44860 * 180.28073 * 11 10 9 39 39 H 1.08006 * 120.79429 * 179.77222 * 12 11 10 40 40 H 1.08003 * 120.44622 * 180.02562 * 13 12 11 41 41 H 1.08998 * 109.47466 * 90.00240 * 16 15 2 42 42 H 1.09002 * 109.47260 * 210.00281 * 16 15 2 43 43 H 1.09000 * 109.47562 * 329.99730 * 16 15 2 44 44 H 1.08999 * 109.47401 * 300.00089 * 19 17 15 45 45 H 1.09001 * 109.47492 * 59.99837 * 19 17 15 46 46 H 0.97000 * 119.99745 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8268 -1.1904 6 6 4.0303 -1.5150 -2.3767 7 1 3.4260 -1.2546 -3.2457 8 6 3.9780 -3.0278 -2.1539 9 6 5.4572 -1.0909 -2.6118 10 7 6.2855 -1.0317 -1.5884 11 6 7.5467 -0.6682 -1.7572 12 6 7.9886 -0.3376 -3.0287 13 6 7.0868 -0.4071 -4.0788 14 7 5.8420 -0.7840 -3.8344 15 7 2.0183 -0.6906 1.1962 16 6 1.6643 -2.0932 1.4280 17 6 2.7932 -0.0356 2.0833 18 8 3.0859 1.1256 1.8916 19 6 3.2951 -0.7459 3.3140 20 16 4.3002 0.3919 4.2995 21 6 4.7429 -0.6691 5.6348 22 1 4.3923 -1.6905 5.6522 23 6 5.5415 -0.1919 6.6650 24 7 5.8718 -0.9843 7.6628 25 14 6.1461 1.5753 6.6361 26 1 5.1627 2.4464 7.3284 27 1 7.4571 1.6613 7.3284 28 1 6.2994 2.0230 5.2286 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1584 -2.1370 34 1 3.7995 -1.2885 -0.3434 35 1 4.5822 -3.2881 -1.2848 36 1 2.9459 -3.3345 -1.9839 37 1 4.3681 -3.5384 -3.0343 38 1 8.2216 -0.6260 -0.9151 39 1 9.0113 -0.0337 -3.1970 40 1 7.3958 -0.1572 -5.0830 41 1 2.4156 -2.7377 0.9717 42 1 1.6237 -2.2852 2.5002 43 1 0.6903 -2.3002 0.9847 44 1 2.4471 -1.0880 3.9073 45 1 3.9004 -1.6026 3.0178 46 1 6.4302 -0.6509 8.3825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482256754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:50 Heat of formation + Delta-G solvation = -4.922967 kcal Electronic energy + Delta-G solvation = -27157.540975 eV Core-core repulsion = 23400.889247 eV Total energy + Delta-G solvation = -3756.651728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.97298 -41.04746 -38.45723 -36.70850 -34.66686 -34.62878 -33.89743 -32.51019 -30.51813 -30.02556 -27.85287 -27.78043 -26.48912 -25.62200 -25.07138 -22.68711 -22.24913 -20.31073 -19.56376 -18.49169 -18.27898 -18.11985 -17.17225 -17.00895 -16.80219 -16.40721 -16.18147 -16.02507 -15.82813 -15.33238 -15.02434 -14.88924 -14.51404 -14.44275 -14.32451 -14.17229 -13.75540 -13.52397 -13.41346 -13.30878 -13.17372 -13.05516 -13.00372 -12.93296 -12.58033 -12.41459 -12.32561 -11.89970 -11.84718 -11.78889 -11.65906 -11.16789 -10.82757 -10.49932 -10.46642 -10.16293 -9.68925 -9.32993 -8.98077 -8.51197 -6.21010 -0.03196 0.19173 0.99475 1.30522 1.46715 1.55136 1.62695 2.12564 2.25497 2.67071 2.71930 2.87111 2.89781 3.15308 3.49493 3.67078 3.77678 3.94382 4.02031 4.14415 4.17430 4.21058 4.23106 4.26690 4.28141 4.33615 4.44337 4.45773 4.62808 4.67526 4.69748 4.74039 4.81254 4.83889 4.91513 4.96212 5.11743 5.15889 5.31573 5.48288 5.66532 5.71511 6.01341 6.11564 6.14300 6.29012 6.37132 6.94464 7.18488 7.19426 8.61333 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009771 B = 0.003467 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.934795 B = 8075.226254 C = 9975.761587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.136 3.864 3 H 0.071 0.929 4 C 0.060 3.940 5 N -0.693 5.693 6 C 0.156 3.844 7 H 0.110 0.890 8 C -0.165 4.165 9 C 0.312 3.688 10 N -0.532 5.532 11 C 0.126 3.874 12 C -0.223 4.223 13 C 0.138 3.862 14 N -0.538 5.538 15 N -0.601 5.601 16 C 0.066 3.934 17 C 0.535 3.465 18 O -0.560 6.560 19 C -0.103 4.103 20 S -0.178 6.178 21 C -0.526 4.526 22 H 0.062 0.938 23 C 0.047 3.953 24 N -0.917 5.917 25 Si 0.913 3.087 26 H -0.262 1.262 27 H -0.258 1.258 28 H -0.240 1.240 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.345 0.655 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.179 0.821 39 H 0.182 0.818 40 H 0.202 0.798 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.705 -4.536 -26.913 27.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.033 3.967 3 H 0.089 0.911 4 C -0.070 4.070 5 N -0.325 5.325 6 C 0.045 3.955 7 H 0.128 0.872 8 C -0.225 4.225 9 C 0.044 3.956 10 N -0.247 5.247 11 C -0.039 4.039 12 C -0.244 4.244 13 C -0.028 4.028 14 N -0.252 5.252 15 N -0.335 5.335 16 C -0.076 4.076 17 C 0.322 3.678 18 O -0.438 6.438 19 C -0.254 4.254 20 S 0.049 5.951 21 C -0.674 4.674 22 H 0.080 0.920 23 C -0.158 4.158 24 N -0.555 5.555 25 Si 0.735 3.265 26 H -0.187 1.187 27 H -0.182 1.182 28 H -0.164 1.164 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.165 0.835 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.196 0.804 39 H 0.199 0.801 40 H 0.219 0.781 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.124 0.876 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.039 -2.521 -27.132 27.910 hybrid contribution 1.075 -1.418 1.142 2.114 sum -4.964 -3.939 -25.989 26.751 Atomic orbital electron populations 1.22048 0.92116 1.03783 1.02954 1.21205 0.95286 0.97108 0.83102 0.91120 1.22373 0.86437 1.00462 0.97703 1.60151 1.10858 1.57210 1.04269 1.20155 0.87499 0.92870 0.95014 0.87201 1.22348 1.03612 0.94182 1.02321 1.23375 0.97090 0.91028 0.84117 1.68201 1.05035 1.15484 1.35932 1.23750 0.91733 0.89878 0.98538 1.23261 1.04369 1.02575 0.94199 1.23865 0.87481 0.89815 1.01637 1.68206 1.19575 1.13736 1.23687 1.47811 1.50098 1.13480 1.22137 1.22077 1.02712 0.79538 1.03249 1.19943 0.77876 0.86220 0.83732 1.90673 1.58187 1.18477 1.76494 1.23263 1.02989 1.02092 0.97072 1.84751 1.65021 1.20877 1.24493 1.22450 1.37203 0.99778 1.07920 0.91993 1.25519 0.94685 1.01818 0.93763 1.70013 1.36810 1.37867 1.10820 0.85893 0.79356 0.80154 0.81126 1.18702 1.18193 1.16386 0.89936 0.93351 0.89533 0.91987 0.88810 0.83534 0.93143 0.89411 0.91599 0.80400 0.80081 0.78085 0.91776 0.90796 0.87722 0.87238 0.87555 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.17 71.98 0.66 -1.58 16 2 C 0.14 2.96 2.95 44.99 0.13 3.10 16 3 H 0.07 2.13 6.90 -2.39 -0.02 2.11 16 4 C 0.06 1.03 4.83 86.30 0.42 1.44 16 5 N -0.69 -16.45 6.03 -495.46 -2.99 -19.44 16 6 C 0.16 3.25 2.99 44.17 0.13 3.39 16 7 H 0.11 2.03 7.77 -2.39 -0.02 2.01 16 8 C -0.17 -2.75 9.14 71.98 0.66 -2.09 16 9 C 0.31 7.95 6.60 138.75 0.92 8.87 16 10 N -0.53 -14.98 10.10 -187.83 -1.90 -16.88 16 11 C 0.13 2.81 11.31 84.70 0.96 3.76 16 12 C -0.22 -3.50 10.17 22.44 0.23 -3.27 16 13 C 0.14 2.29 11.30 84.70 0.96 3.24 16 14 N -0.54 -12.28 10.32 -187.84 -1.94 -14.22 16 15 N -0.60 -15.06 1.83 -822.60 -1.51 -16.57 16 16 C 0.07 1.11 9.38 127.77 1.20 2.31 16 17 C 0.54 19.60 7.69 87.66 0.67 20.28 16 18 O -0.56 -25.57 15.19 -3.04 -0.05 -25.61 16 19 C -0.10 -4.09 4.71 71.24 0.34 -3.76 16 20 S -0.18 -9.32 18.55 -56.49 -1.05 -10.37 16 21 C -0.53 -31.18 10.04 67.95 0.68 -30.50 16 22 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 23 C 0.05 2.83 5.50 84.86 0.47 3.30 16 24 N -0.92 -56.41 13.97 21.65 0.30 -56.11 16 25 Si 0.91 45.96 27.74 68.60 1.90 47.86 16 26 H -0.26 -12.88 7.11 99.48 0.71 -12.17 16 27 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.24 -12.19 6.74 99.48 0.67 -11.52 16 29 H 0.08 0.84 6.66 -2.39 -0.02 0.82 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 0.74 7.13 -2.39 -0.02 0.72 16 33 H 0.09 1.41 8.05 -2.39 -0.02 1.39 16 34 H 0.34 9.36 7.59 -89.70 -0.68 8.68 16 35 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 36 H 0.09 1.05 7.45 -2.38 -0.02 1.03 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.18 3.29 8.06 -2.91 -0.02 3.27 16 39 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 42 H 0.07 1.34 6.44 -2.39 -0.02 1.32 16 43 H 0.10 1.09 6.43 -2.39 -0.02 1.07 16 44 H 0.11 3.98 7.40 -2.40 -0.02 3.97 16 45 H 0.11 3.97 8.11 -2.39 -0.02 3.95 16 46 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -82.42 391.62 1.46 -80.96 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.27 Total: 21.90 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 8.42 Total: 8.48 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -8.03 Total: -123.21 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.05 Total: -25.61 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.90 Total: 47.86 kcal Atomic # 16 Polarization: -9.32 SS G_CDS: -1.05 Total: -10.37 kcal Total: -82.42 1.46 -80.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482256754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.038 kcal (2) G-P(sol) polarization free energy of solvation -82.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds