Wall clock time and date at job start Tue Mar 31 2020 20:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46723 * 2 1 4 4 N 1.46499 * 109.47367 * 240.00033 * 2 1 3 5 5 C 1.36935 * 119.99800 * 85.00104 * 4 2 1 6 6 H 1.07994 * 120.00446 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00006 * 180.02562 * 5 4 2 8 8 N 1.31626 * 119.99608 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00230 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47148 * 59.99689 * 9 7 5 11 11 H 1.48503 * 109.46846 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47217 * 299.99558 * 9 7 5 13 13 C 1.52999 * 109.46965 * 119.99897 * 2 1 3 14 14 H 1.08996 * 109.49716 * 60.06682 * 13 2 1 15 15 C 1.53046 * 109.49762 * 299.99971 * 13 2 1 16 16 C 1.53036 * 109.53815 * 178.68410 * 15 13 2 17 17 C 1.53191 * 109.31316 * 61.36467 * 16 15 13 18 18 N 1.46924 * 108.78030 * 305.36813 * 17 16 15 19 19 C 1.34766 * 120.63328 * 233.62849 * 18 17 16 20 20 O 1.21575 * 120.00164 * 355.84375 * 19 18 17 21 21 C 1.47707 * 120.00187 * 175.84429 * 19 18 17 22 22 C 1.39679 * 120.15639 * 54.20465 * 21 19 18 23 23 C 1.37838 * 119.92527 * 180.02562 * 22 21 19 24 24 C 1.38446 * 120.24388 * 0.02562 * 23 22 21 25 25 C 1.38386 * 120.31162 * 359.97438 * 24 23 22 26 26 F 1.35103 * 119.96207 * 180.02562 * 25 24 23 27 27 C 1.38545 * 120.07090 * 359.71840 * 25 24 23 28 28 F 1.35101 * 120.12376 * 180.27399 * 27 25 24 29 29 C 1.46932 * 118.73469 * 53.60253 * 18 17 16 30 30 H 1.08999 * 109.47646 * 300.00068 * 1 2 3 31 31 H 1.08996 * 109.47188 * 60.00323 * 1 2 3 32 32 H 1.09005 * 109.46723 * 179.97438 * 1 2 3 33 33 H 0.96996 * 119.99986 * 264.99560 * 4 2 1 34 34 H 0.97002 * 119.99524 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.45654 * 58.66551 * 15 13 2 36 36 H 1.08993 * 109.45076 * 298.70226 * 15 13 2 37 37 H 1.09004 * 109.50086 * 301.42053 * 16 15 13 38 38 H 1.09001 * 109.49823 * 181.32051 * 16 15 13 39 39 H 1.09009 * 109.58197 * 65.15127 * 17 16 15 40 40 H 1.09001 * 109.59232 * 185.57519 * 17 16 15 41 41 H 1.07998 * 120.03445 * 359.97338 * 22 21 19 42 42 H 1.08004 * 119.87990 * 179.97438 * 23 22 21 43 43 H 1.08004 * 119.84453 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.58075 * 186.60352 * 29 18 17 45 45 H 1.08996 * 109.58669 * 66.18388 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0074 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6115 -0.6619 -3.5092 8 7 2.9245 -1.9390 -3.4501 9 14 2.7893 0.2699 -5.1185 10 1 3.7445 1.3924 -4.9376 11 1 3.2984 -0.6486 -6.1685 12 1 1.4667 0.8065 -5.5285 13 6 2.0400 -0.7212 1.2493 14 1 1.6779 -1.7493 1.2491 15 6 1.5301 -0.0002 2.4993 16 6 2.0125 -0.7397 3.7492 17 6 3.5441 -0.7368 3.7802 18 7 4.0438 -1.2969 2.5172 19 6 4.9181 -2.3225 2.5192 20 8 5.3588 -2.7437 3.5711 21 6 5.3409 -2.9350 1.2433 22 6 5.8737 -2.1400 0.2259 23 6 6.2662 -2.7165 -0.9630 24 6 6.1340 -4.0815 -1.1533 25 6 5.6075 -4.8785 -0.1520 26 9 5.4821 -6.2097 -0.3451 27 6 5.2146 -4.3136 1.0505 28 9 4.7056 -5.0915 2.0308 29 6 3.5719 -0.7179 1.2520 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2492 -1.6317 -1.1526 34 1 3.2479 -2.3962 -4.2421 35 1 0.4404 0.0205 2.4874 36 1 1.9125 1.0204 2.5109 37 1 1.6512 -1.7679 3.7258 38 1 1.6296 -0.2392 4.6386 39 1 3.9052 0.2853 3.8949 40 1 3.8940 -1.3458 4.6138 41 1 5.9771 -1.0748 0.3703 42 1 6.6777 -2.1011 -1.7494 43 1 6.4433 -4.5263 -2.0876 44 1 3.9401 -1.3145 0.4174 45 1 3.9353 0.3056 1.1605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482476652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:11 Heat of formation + Delta-G solvation = -87.946403 kcal Electronic energy + Delta-G solvation = -30933.249196 eV Core-core repulsion = 26586.864164 eV Total energy + Delta-G solvation = -4346.385032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.33592 -48.41104 -40.47368 -38.47270 -37.67769 -35.33334 -33.15233 -32.30485 -30.88761 -30.30297 -29.77838 -28.23330 -25.83957 -24.20528 -23.67429 -23.08610 -22.54778 -21.16073 -19.69935 -19.41468 -17.86938 -17.51300 -17.14412 -17.01454 -16.50322 -16.03736 -15.62818 -15.05675 -14.94270 -14.86979 -14.76951 -14.37269 -14.25060 -13.98175 -13.79377 -13.61142 -13.13565 -13.01183 -12.90542 -12.66301 -12.39111 -12.07477 -11.97529 -11.92530 -11.60108 -11.37275 -11.15747 -11.01055 -10.93398 -10.77669 -10.60747 -10.43363 -10.26900 -9.92269 -9.80958 -9.63488 -8.98554 -8.95740 -8.62750 -8.53399 -7.02448 -5.82012 -3.11097 0.78207 1.03277 2.59256 2.95993 3.37297 3.43125 3.44085 3.49891 3.84024 4.30518 4.47878 4.51417 4.74361 4.84142 4.88335 4.95371 5.03480 5.12962 5.17996 5.36763 5.49466 5.51253 5.59866 5.64483 5.73735 5.77846 5.83506 5.90438 5.95811 5.97005 6.07449 6.09339 6.13752 6.14073 6.24089 6.27167 6.37497 6.47837 6.54641 6.66298 6.75397 6.84111 7.04193 7.38991 7.64462 8.12430 8.35181 9.46994 10.03260 10.38765 11.39371 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008456 B = 0.005771 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.268684 B = 4850.879379 C = 7279.341513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.180 3.820 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.068 0.932 7 C -0.009 4.009 8 N -0.928 5.928 9 Si 0.901 3.099 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.288 1.288 13 C -0.105 4.105 14 H 0.070 0.930 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.112 3.888 18 N -0.600 5.600 19 C 0.567 3.433 20 O -0.535 6.535 21 C -0.137 4.137 22 C -0.063 4.063 23 C -0.081 4.081 24 C -0.095 4.095 25 C 0.064 3.936 26 F -0.129 7.129 27 C 0.107 3.893 28 F -0.121 7.121 29 C 0.106 3.894 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.149 0.851 44 H 0.106 0.894 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.968 1.342 10.016 10.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.069 3.931 3 H 0.067 0.933 4 N -0.365 5.365 5 C -0.369 4.369 6 H 0.086 0.914 7 C -0.205 4.205 8 N -0.576 5.576 9 Si 0.732 3.268 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.215 1.215 13 C -0.125 4.125 14 H 0.089 0.911 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.010 4.010 18 N -0.332 5.332 19 C 0.355 3.645 20 O -0.412 6.412 21 C -0.141 4.141 22 C -0.082 4.082 23 C -0.100 4.100 24 C -0.114 4.114 25 C 0.044 3.956 26 F -0.107 7.107 27 C 0.086 3.914 28 F -0.099 7.099 29 C -0.016 4.016 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.216 0.784 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.166 0.834 44 H 0.124 0.876 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.196 1.159 10.472 11.341 hybrid contribution -0.257 -0.212 -1.051 1.102 sum 3.939 0.947 9.422 10.256 Atomic orbital electron populations 1.22475 0.99216 1.00866 0.99969 1.20191 0.91928 0.95278 0.85655 0.93332 1.42432 1.78156 1.10621 1.05306 1.19143 1.36620 0.93766 0.87377 0.91391 1.24668 1.02280 0.95878 0.97658 1.69653 1.50747 1.08381 1.28784 0.86380 0.77771 0.78645 0.84009 1.21394 1.21788 1.21459 1.21778 0.94327 1.00735 0.95647 0.91135 1.21633 1.01152 0.99030 0.93462 1.21927 0.94937 1.01584 0.98742 1.21624 0.94109 0.98906 0.86367 1.48107 1.43423 1.33287 1.08416 1.17969 0.79053 0.79476 0.88028 1.90782 1.55564 1.62534 1.32342 1.19700 1.05945 0.91694 0.96799 1.21212 0.95415 1.00058 0.91498 1.20994 0.98151 0.93744 0.97065 1.21226 0.97943 0.94132 0.98088 1.17464 1.05249 0.78632 0.94274 1.91525 1.94072 1.29806 1.95322 1.17447 1.00353 0.87916 0.85682 1.91544 1.84272 1.73916 1.60154 1.22161 0.95063 0.99474 0.84908 0.94216 0.92848 0.93611 0.78375 0.93573 0.91111 0.91766 0.91603 0.90831 0.91339 0.89240 0.83878 0.83484 0.83364 0.87569 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 9.14 37.16 0.34 -2.40 16 2 C 0.18 3.14 2.47 -67.93 -0.17 2.97 16 3 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 4 N -0.72 -15.99 4.52 -53.42 -0.24 -16.23 16 5 C -0.24 -5.93 9.93 -15.06 -0.15 -6.08 16 6 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 7 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 8 N -0.93 -25.15 13.06 55.49 0.72 -24.43 16 9 Si 0.90 20.80 29.55 -169.99 -5.02 15.78 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 C -0.10 -1.55 1.97 -90.50 -0.18 -1.73 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 15 C -0.11 -1.35 4.85 -26.69 -0.13 -1.48 16 16 C -0.13 -1.47 6.08 -26.61 -0.16 -1.63 16 17 C 0.11 1.36 6.42 -3.71 -0.02 1.34 16 18 N -0.60 -8.67 2.97 -173.93 -0.52 -9.19 16 19 C 0.57 9.46 6.92 -12.40 -0.09 9.38 16 20 O -0.53 -10.27 16.28 5.30 0.09 -10.18 16 21 C -0.14 -2.20 4.89 -104.92 -0.51 -2.71 16 22 C -0.06 -0.88 7.42 -39.19 -0.29 -1.17 16 23 C -0.08 -1.09 10.02 -39.65 -0.40 -1.49 16 24 C -0.09 -1.31 10.01 -39.45 -0.40 -1.71 16 25 C 0.06 1.01 7.30 -39.41 -0.29 0.72 16 26 F -0.13 -2.07 17.18 2.25 0.04 -2.03 16 27 C 0.11 1.81 7.28 -38.90 -0.28 1.53 16 28 F -0.12 -2.20 16.57 2.25 0.04 -2.17 16 29 C 0.11 1.55 4.57 -3.71 -0.02 1.53 16 30 H 0.04 0.54 6.40 -51.93 -0.33 0.21 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.38 9.17 7.62 -40.82 -0.31 8.86 16 34 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 40 H 0.09 1.16 7.03 -51.93 -0.36 0.80 16 41 H 0.14 1.76 7.37 -52.49 -0.39 1.37 16 42 H 0.15 1.70 8.06 -52.48 -0.42 1.28 16 43 H 0.15 1.72 8.06 -52.48 -0.42 1.30 16 44 H 0.11 1.75 4.25 -51.93 -0.22 1.53 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -29.31 370.74 -8.28 -37.60 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.14 Total: 8.52 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.84 Total: -3.26 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.03 Total: -49.84 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.08 Total: -4.20 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.31 -8.28 -37.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482476652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.351 kcal (2) G-P(sol) polarization free energy of solvation -29.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds