Wall clock time and date at job start Tue Mar 31 2020 20:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46723 * 2 1 4 4 N 1.46499 * 109.47367 * 240.00033 * 2 1 3 5 5 C 1.36935 * 119.99800 * 85.00104 * 4 2 1 6 6 H 1.07994 * 120.00446 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00006 * 180.02562 * 5 4 2 8 8 N 1.31626 * 119.99608 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00230 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47148 * 59.99689 * 9 7 5 11 11 H 1.48503 * 109.46846 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47217 * 299.99558 * 9 7 5 13 13 C 1.52999 * 109.46965 * 119.99897 * 2 1 3 14 14 H 1.08996 * 109.49716 * 60.06682 * 13 2 1 15 15 C 1.53046 * 109.49762 * 299.99971 * 13 2 1 16 16 C 1.53036 * 109.53815 * 178.68410 * 15 13 2 17 17 C 1.53191 * 109.31316 * 61.36467 * 16 15 13 18 18 N 1.46924 * 108.78030 * 305.36813 * 17 16 15 19 19 C 1.34766 * 120.63328 * 233.62849 * 18 17 16 20 20 O 1.21575 * 120.00164 * 355.84375 * 19 18 17 21 21 C 1.47707 * 120.00187 * 175.84429 * 19 18 17 22 22 C 1.39679 * 120.15639 * 54.20465 * 21 19 18 23 23 C 1.37838 * 119.92527 * 180.02562 * 22 21 19 24 24 C 1.38446 * 120.24388 * 0.02562 * 23 22 21 25 25 C 1.38386 * 120.31162 * 359.97438 * 24 23 22 26 26 F 1.35103 * 119.96207 * 180.02562 * 25 24 23 27 27 C 1.38545 * 120.07090 * 359.71840 * 25 24 23 28 28 F 1.35101 * 120.12376 * 180.27399 * 27 25 24 29 29 C 1.46932 * 118.73469 * 53.60253 * 18 17 16 30 30 H 1.08999 * 109.47646 * 300.00068 * 1 2 3 31 31 H 1.08996 * 109.47188 * 60.00323 * 1 2 3 32 32 H 1.09005 * 109.46723 * 179.97438 * 1 2 3 33 33 H 0.96996 * 119.99986 * 264.99560 * 4 2 1 34 34 H 0.97002 * 119.99524 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.45654 * 58.66551 * 15 13 2 36 36 H 1.08993 * 109.45076 * 298.70226 * 15 13 2 37 37 H 1.09004 * 109.50086 * 301.42053 * 16 15 13 38 38 H 1.09001 * 109.49823 * 181.32051 * 16 15 13 39 39 H 1.09009 * 109.58197 * 65.15127 * 17 16 15 40 40 H 1.09001 * 109.59232 * 185.57519 * 17 16 15 41 41 H 1.07998 * 120.03445 * 359.97338 * 22 21 19 42 42 H 1.08004 * 119.87990 * 179.97438 * 23 22 21 43 43 H 1.08004 * 119.84453 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.58075 * 186.60352 * 29 18 17 45 45 H 1.08996 * 109.58669 * 66.18388 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0074 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6115 -0.6619 -3.5092 8 7 2.9245 -1.9390 -3.4501 9 14 2.7893 0.2699 -5.1185 10 1 3.7445 1.3924 -4.9376 11 1 3.2984 -0.6486 -6.1685 12 1 1.4667 0.8065 -5.5285 13 6 2.0400 -0.7212 1.2493 14 1 1.6779 -1.7493 1.2491 15 6 1.5301 -0.0002 2.4993 16 6 2.0125 -0.7397 3.7492 17 6 3.5441 -0.7368 3.7802 18 7 4.0438 -1.2969 2.5172 19 6 4.9181 -2.3225 2.5192 20 8 5.3588 -2.7437 3.5711 21 6 5.3409 -2.9350 1.2433 22 6 5.8737 -2.1400 0.2259 23 6 6.2662 -2.7165 -0.9630 24 6 6.1340 -4.0815 -1.1533 25 6 5.6075 -4.8785 -0.1520 26 9 5.4821 -6.2097 -0.3451 27 6 5.2146 -4.3136 1.0505 28 9 4.7056 -5.0915 2.0308 29 6 3.5719 -0.7179 1.2520 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2492 -1.6317 -1.1526 34 1 3.2479 -2.3962 -4.2421 35 1 0.4404 0.0205 2.4874 36 1 1.9125 1.0204 2.5109 37 1 1.6512 -1.7679 3.7258 38 1 1.6296 -0.2392 4.6386 39 1 3.9052 0.2853 3.8949 40 1 3.8940 -1.3458 4.6138 41 1 5.9771 -1.0748 0.3703 42 1 6.6777 -2.1011 -1.7494 43 1 6.4433 -4.5263 -2.0876 44 1 3.9401 -1.3145 0.4174 45 1 3.9353 0.3056 1.1605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482476652.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:10 Heat of formation + Delta-G solvation = -103.232544 kcal Electronic energy + Delta-G solvation = -30933.912053 eV Core-core repulsion = 26586.864164 eV Total energy + Delta-G solvation = -4347.047889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.63470 -49.71307 -41.68399 -39.63731 -38.97076 -36.79513 -34.56363 -33.70924 -32.12600 -31.51831 -31.15402 -29.70803 -27.01702 -25.84433 -24.83112 -24.38924 -23.77740 -22.34772 -21.07474 -20.55555 -19.11935 -19.01472 -18.64862 -18.26822 -17.76804 -17.31235 -16.81263 -16.65214 -16.26458 -16.08290 -16.00945 -15.58593 -15.48541 -15.43609 -15.25692 -14.94342 -14.38094 -14.25307 -14.12226 -13.95258 -13.71001 -13.42082 -13.12405 -13.07585 -12.94224 -12.78145 -12.69955 -12.50726 -12.35454 -12.12308 -11.98020 -11.76056 -11.67522 -11.41733 -11.15852 -11.05209 -10.81434 -10.15771 -9.83425 -9.70469 -8.85500 -7.77834 -5.05151 -0.39878 -0.16301 1.32779 1.55210 1.57604 1.61672 1.80277 2.33251 2.64352 2.66168 3.07535 3.28415 3.54529 3.58889 3.72267 3.74435 3.87889 4.00772 4.07122 4.09601 4.18408 4.32171 4.42147 4.48908 4.60525 4.65891 4.71380 4.78911 4.81506 4.88448 4.91131 4.96448 4.99526 5.01151 5.07449 5.13753 5.14353 5.30424 5.36988 5.48920 5.53762 5.60079 5.66723 5.69650 6.16637 6.41986 6.87844 7.49670 8.23560 8.48194 9.43475 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008456 B = 0.005771 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.268684 B = 4850.879379 C = 7279.341513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.177 3.823 3 H 0.056 0.944 4 N -0.731 5.731 5 C -0.231 4.231 6 H 0.071 0.929 7 C -0.060 4.060 8 N -0.954 5.954 9 Si 0.954 3.046 10 H -0.278 1.278 11 H -0.301 1.301 12 H -0.292 1.292 13 C -0.096 4.096 14 H 0.047 0.953 15 C -0.109 4.109 16 C -0.126 4.126 17 C 0.105 3.895 18 N -0.592 5.592 19 C 0.563 3.437 20 O -0.568 6.568 21 C -0.148 4.148 22 C -0.058 4.058 23 C -0.079 4.079 24 C -0.091 4.091 25 C 0.051 3.949 26 F -0.135 7.135 27 C 0.081 3.919 28 F -0.137 7.137 29 C 0.109 3.891 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.370 0.630 34 H 0.248 0.752 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.048 0.952 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.162 0.838 42 H 0.171 0.829 43 H 0.172 0.828 44 H 0.087 0.913 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.731 3.868 10.346 11.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.069 3.931 3 H 0.074 0.926 4 N -0.371 5.371 5 C -0.363 4.363 6 H 0.089 0.911 7 C -0.253 4.253 8 N -0.605 5.605 9 Si 0.785 3.215 10 H -0.204 1.204 11 H -0.228 1.228 12 H -0.219 1.219 13 C -0.116 4.116 14 H 0.066 0.934 15 C -0.146 4.146 16 C -0.164 4.164 17 C -0.016 4.016 18 N -0.323 5.323 19 C 0.351 3.649 20 O -0.449 6.449 21 C -0.152 4.152 22 C -0.076 4.076 23 C -0.097 4.097 24 C -0.109 4.109 25 C 0.031 3.969 26 F -0.114 7.114 27 C 0.060 3.940 28 F -0.115 7.115 29 C -0.012 4.012 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.202 0.798 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.179 0.821 42 H 0.189 0.811 43 H 0.190 0.810 44 H 0.105 0.895 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.924 3.739 10.828 12.109 hybrid contribution -0.238 -0.936 -1.131 1.487 sum 3.686 2.803 9.697 10.746 Atomic orbital electron populations 1.22368 0.98284 1.00305 1.00819 1.20389 0.92407 0.95351 0.84985 0.92621 1.42574 1.78310 1.10117 1.06105 1.19431 1.34712 0.93924 0.88274 0.91060 1.25232 1.03387 0.96580 1.00099 1.69784 1.52372 1.09471 1.28840 0.85524 0.77398 0.77605 0.80975 1.20430 1.22791 1.21878 1.21644 0.94334 0.99556 0.96053 0.93430 1.21616 1.01722 0.99520 0.91780 1.21892 0.93798 1.00955 0.99739 1.21880 0.95034 0.99838 0.84811 1.48162 1.42381 1.32429 1.09315 1.18121 0.79278 0.79760 0.87771 1.90754 1.57061 1.63665 1.33389 1.19794 1.06643 0.91501 0.97292 1.21462 0.94320 1.00764 0.91085 1.21344 0.97272 0.93788 0.97302 1.21553 0.96788 0.94299 0.98301 1.17668 1.06038 0.78645 0.94535 1.91500 1.94229 1.30277 1.95347 1.17771 1.01762 0.88486 0.86021 1.91488 1.84747 1.74389 1.60896 1.22096 0.94971 0.99805 0.84363 0.90636 0.94680 0.94881 0.79786 0.94344 0.90146 0.89833 0.93305 0.87631 0.88739 0.90317 0.82070 0.81131 0.81033 0.89507 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 9.14 71.98 0.66 -4.27 16 2 C 0.18 5.85 2.47 44.99 0.11 5.96 16 3 H 0.06 1.79 8.08 -2.38 -0.02 1.77 16 4 N -0.73 -31.74 4.52 -322.94 -1.46 -33.20 16 5 C -0.23 -11.29 9.93 84.03 0.83 -10.46 16 6 H 0.07 3.38 7.83 -2.91 -0.02 3.36 16 7 C -0.06 -3.05 5.50 84.86 0.47 -2.59 16 8 N -0.95 -51.76 13.06 21.65 0.28 -51.48 16 9 Si 0.95 42.23 29.55 68.60 2.03 44.26 16 10 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 13 C -0.10 -2.66 1.97 -10.71 -0.02 -2.68 16 14 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 15 C -0.11 -2.17 4.85 30.62 0.15 -2.02 16 16 C -0.13 -2.39 6.08 30.67 0.19 -2.21 16 17 C 0.11 2.33 6.42 86.36 0.55 2.89 16 18 N -0.59 -16.44 2.97 -822.46 -2.44 -18.88 16 19 C 0.56 18.89 6.92 86.75 0.60 19.50 16 20 O -0.57 -22.29 16.28 -3.95 -0.06 -22.35 16 21 C -0.15 -4.82 4.89 -20.06 -0.10 -4.91 16 22 C -0.06 -1.58 7.42 22.52 0.17 -1.41 16 23 C -0.08 -2.03 10.02 22.22 0.22 -1.81 16 24 C -0.09 -2.46 10.01 22.35 0.22 -2.23 16 25 C 0.05 1.65 7.30 22.38 0.16 1.82 16 26 F -0.13 -4.48 17.18 44.97 0.77 -3.70 16 27 C 0.08 2.84 7.28 22.71 0.17 3.00 16 28 F -0.14 -5.29 16.57 44.97 0.74 -4.54 16 29 C 0.11 3.03 4.57 86.36 0.39 3.42 16 30 H 0.07 1.80 6.40 -2.39 -0.02 1.79 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.37 17.85 7.62 -92.71 -0.71 17.14 16 34 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 35 H 0.08 1.50 6.36 -2.39 -0.02 1.48 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.08 1.96 7.03 -2.39 -0.02 1.94 16 41 H 0.16 3.71 7.37 -2.91 -0.02 3.68 16 42 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 43 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 44 H 0.09 2.80 4.25 -2.39 -0.01 2.79 16 45 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -63.96 370.74 4.96 -59.00 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.32 Total: 28.90 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 4.78 Total: 1.99 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -3.62 Total: -103.56 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.06 Total: -22.35 kcal Atomic # 9 Polarization: -9.76 SS G_CDS: 1.52 Total: -8.25 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -63.96 4.96 -59.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482476652.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.233 kcal (2) G-P(sol) polarization free energy of solvation -63.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds