Wall clock time and date at job start Tue Mar 31 2020 20:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47621 * 2 1 4 4 N 1.46508 * 109.46989 * 119.99481 * 2 1 3 5 5 C 1.36932 * 120.00223 * 275.00079 * 4 2 1 6 6 H 1.07999 * 119.99789 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00165 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99954 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00194 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47068 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47213 * 119.99545 * 9 7 5 12 12 H 1.48498 * 109.46851 * 239.99528 * 9 7 5 13 13 C 1.53004 * 109.47445 * 239.99706 * 2 1 3 14 14 H 1.08993 * 109.52383 * 185.08482 * 13 2 1 15 15 C 1.53035 * 109.49510 * 64.99894 * 13 2 1 16 16 C 1.53038 * 109.52609 * 178.69467 * 15 13 2 17 17 C 1.53165 * 109.32902 * 61.37343 * 16 15 13 18 18 N 1.46927 * 108.76247 * 305.35549 * 17 16 15 19 19 C 1.34781 * 120.62867 * 233.62498 * 18 17 16 20 20 O 1.21566 * 119.99939 * 175.08037 * 19 18 17 21 21 C 1.47701 * 120.00098 * 355.08713 * 19 18 17 22 22 C 1.39679 * 120.15465 * 322.00879 * 21 19 18 23 23 C 1.37843 * 119.92668 * 180.02562 * 22 21 19 24 24 C 1.38453 * 120.24220 * 0.02562 * 23 22 21 25 25 C 1.38386 * 120.30816 * 359.97080 * 24 23 22 26 26 F 1.35098 * 119.96053 * 180.02562 * 25 24 23 27 27 C 1.38544 * 120.07238 * 359.72830 * 25 24 23 28 28 F 1.35105 * 120.11872 * 180.27329 * 27 25 24 29 29 C 1.46921 * 118.73972 * 53.61431 * 18 17 16 30 30 H 1.09002 * 109.47538 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47207 * 300.00243 * 1 2 3 32 32 H 1.09002 * 109.47443 * 59.99985 * 1 2 3 33 33 H 0.97006 * 119.99283 * 95.00245 * 4 2 1 34 34 H 0.96996 * 120.00172 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46469 * 298.70842 * 15 13 2 36 36 H 1.08999 * 109.45964 * 58.68195 * 15 13 2 37 37 H 1.09005 * 109.50079 * 181.31424 * 16 15 13 38 38 H 1.09002 * 109.49844 * 301.40618 * 16 15 13 39 39 H 1.09005 * 109.58757 * 185.57690 * 17 16 15 40 40 H 1.08995 * 109.59204 * 65.14042 * 17 16 15 41 41 H 1.07999 * 120.03934 * 359.97438 * 22 21 19 42 42 H 1.07997 * 119.88127 * 179.97438 * 23 22 21 43 43 H 1.07993 * 119.84559 * 179.97438 * 24 23 22 44 44 H 1.09006 * 109.58490 * 186.60101 * 29 18 17 45 45 H 1.08993 * 109.58744 * 66.17419 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1490 -0.0074 2.3758 6 1 1.8925 1.0406 2.4241 7 6 2.6122 -0.6615 3.5091 8 7 2.9252 -1.9386 3.4501 9 14 2.7899 0.2702 5.1184 10 1 2.3750 1.6824 4.9211 11 1 1.9296 -0.3590 6.1524 12 1 4.2068 0.2282 5.5608 13 6 2.0400 -0.7213 -1.2492 14 1 3.1261 -0.8013 -1.2057 15 6 1.6355 0.0685 -2.4960 16 6 2.1732 -0.6351 -3.7441 17 6 1.5611 -2.0359 -3.8398 18 7 1.8219 -2.7524 -2.5838 19 6 2.4130 -3.9636 -2.5942 20 8 2.7045 -4.5067 -1.5464 21 6 2.7067 -4.6311 -3.8787 22 6 1.8055 -4.5348 -4.9416 23 6 2.0841 -5.1600 -6.1381 24 6 3.2542 -5.8842 -6.2906 25 6 4.1540 -5.9859 -5.2441 26 9 5.2939 -6.6938 -5.4009 27 6 3.8900 -5.3575 -4.0380 28 9 4.7704 -5.4517 -3.0175 29 6 1.4263 -2.1233 -1.3164 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2489 -1.6318 1.1527 34 1 3.2485 -2.3958 4.2421 35 1 0.5485 0.1270 -2.5521 36 1 2.0507 1.0747 -2.4391 37 1 1.9049 -0.0599 -4.6302 38 1 3.2582 -0.7159 -3.6772 39 1 2.0148 -2.5770 -4.6701 40 1 0.4857 -1.9548 -3.9977 41 1 0.8911 -3.9719 -4.8258 42 1 1.3866 -5.0855 -6.9592 43 1 3.4658 -6.3718 -7.2307 44 1 1.7910 -2.7222 -0.4818 45 1 0.3399 -2.0494 -1.2686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482476654.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:17 Heat of formation + Delta-G solvation = -101.884234 kcal Electronic energy + Delta-G solvation = -29943.693904 eV Core-core repulsion = 25596.704482 eV Total energy + Delta-G solvation = -4346.989422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.62898 -49.71315 -41.75185 -39.78628 -38.92164 -37.00841 -34.77322 -33.29544 -32.52568 -31.61157 -31.19387 -29.33757 -27.09699 -26.28773 -24.80048 -24.71798 -23.76745 -22.41972 -21.23651 -20.05689 -19.33978 -18.96232 -18.68751 -18.24226 -17.66260 -17.29169 -16.90702 -16.72575 -16.23053 -16.12762 -16.04150 -15.69680 -15.50056 -15.48084 -15.30178 -15.15110 -14.45452 -14.29061 -14.02022 -13.96138 -13.88166 -13.45348 -13.21177 -13.07548 -12.94338 -12.89995 -12.80442 -12.58265 -12.26506 -12.04260 -11.91318 -11.81701 -11.74469 -11.43123 -11.21392 -11.03358 -10.94874 -10.21585 -9.84947 -9.65969 -9.02583 -7.94037 -5.23845 -0.49667 -0.19963 1.42739 1.44791 1.46229 1.54795 1.78982 2.33486 2.54417 2.66996 3.12436 3.29394 3.38844 3.59890 3.71847 3.75613 3.86808 3.91383 4.03270 4.09073 4.15789 4.29568 4.38505 4.45819 4.57804 4.62500 4.69278 4.71803 4.82487 4.83944 4.87820 4.90388 5.01531 5.07967 5.10150 5.11472 5.15325 5.25461 5.37991 5.44349 5.48036 5.54707 5.61853 5.69878 6.26449 6.27284 6.96914 7.31433 8.10677 8.31340 9.29710 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015710 B = 0.003020 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.842901 B = 9268.742819 C =10563.292475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.046 0.954 4 N -0.744 5.744 5 C -0.233 4.233 6 H 0.080 0.920 7 C -0.085 4.085 8 N -0.975 5.975 9 Si 0.974 3.026 10 H -0.260 1.260 11 H -0.295 1.295 12 H -0.298 1.298 13 C -0.093 4.093 14 H 0.034 0.966 15 C -0.107 4.107 16 C -0.131 4.131 17 C 0.084 3.916 18 N -0.594 5.594 19 C 0.541 3.459 20 O -0.584 6.584 21 C -0.152 4.152 22 C -0.060 4.060 23 C -0.078 4.078 24 C -0.085 4.085 25 C 0.045 3.955 26 F -0.139 7.139 27 C 0.072 3.928 28 F -0.146 7.146 29 C 0.123 3.877 30 H 0.044 0.956 31 H 0.033 0.967 32 H 0.086 0.914 33 H 0.368 0.632 34 H 0.248 0.752 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.044 0.956 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.182 0.818 42 H 0.205 0.795 43 H 0.189 0.811 44 H 0.042 0.958 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.724 -1.684 -32.317 33.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.064 0.936 4 N -0.384 5.384 5 C -0.365 4.365 6 H 0.098 0.902 7 C -0.277 4.277 8 N -0.626 5.626 9 Si 0.803 3.197 10 H -0.184 1.184 11 H -0.222 1.222 12 H -0.225 1.225 13 C -0.114 4.114 14 H 0.053 0.947 15 C -0.145 4.145 16 C -0.169 4.169 17 C -0.036 4.036 18 N -0.325 5.325 19 C 0.330 3.670 20 O -0.464 6.464 21 C -0.156 4.156 22 C -0.079 4.079 23 C -0.095 4.095 24 C -0.103 4.103 25 C 0.025 3.975 26 F -0.117 7.117 27 C 0.051 3.949 28 F -0.125 7.125 29 C 0.001 3.999 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.105 0.895 33 H 0.200 0.800 34 H 0.056 0.944 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.138 0.862 38 H 0.063 0.937 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.199 0.801 42 H 0.222 0.778 43 H 0.206 0.794 44 H 0.061 0.939 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.508 -1.797 -31.620 32.549 hybrid contribution 1.545 -0.554 2.546 3.029 sum -5.963 -2.351 -29.073 29.772 Atomic orbital electron populations 1.22389 0.96887 1.00984 1.01315 1.20503 0.93532 0.94771 0.84893 0.93552 1.42832 1.78534 1.10306 1.06726 1.19701 1.34326 0.94203 0.88272 0.90214 1.25648 1.03312 0.96853 1.01854 1.69891 1.52968 1.10573 1.29203 0.85054 0.76584 0.78342 0.79702 1.18414 1.22190 1.22517 1.21628 0.98504 0.94596 0.96636 0.94698 1.21613 1.02693 0.98514 0.91701 1.21957 0.99869 0.95676 0.99383 1.22714 1.03444 0.92964 0.84519 1.48145 1.58372 1.16677 1.09353 1.18697 0.77526 0.82110 0.88678 1.90878 1.53698 1.66413 1.35455 1.19856 0.96337 1.03170 0.96281 1.21906 0.98517 0.97135 0.90296 1.21675 0.96245 0.93491 0.98116 1.21823 0.92407 0.98187 0.97906 1.17918 0.86791 0.98535 0.94276 1.91517 1.48161 1.76220 1.95839 1.18279 0.89762 1.01622 0.85254 1.91527 1.67637 1.94517 1.58829 1.21629 1.00008 0.93251 0.85031 0.93693 0.94813 0.89543 0.80047 0.94365 0.88851 0.90951 0.86244 0.93711 0.86814 0.86837 0.80084 0.77820 0.79401 0.93938 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.13 8.76 71.98 0.63 -4.49 16 2 C 0.17 6.71 2.67 44.99 0.12 6.83 16 3 H 0.05 1.83 8.08 -2.38 -0.02 1.81 16 4 N -0.74 -39.77 5.06 -322.93 -1.63 -41.41 16 5 C -0.23 -13.54 9.93 84.03 0.83 -12.71 16 6 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 7 C -0.09 -5.20 5.50 84.86 0.47 -4.74 16 8 N -0.97 -64.97 13.06 21.65 0.28 -64.69 16 9 Si 0.97 48.76 29.55 68.60 2.03 50.79 16 10 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 12 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 13 C -0.09 -3.07 2.27 -10.72 -0.02 -3.10 16 14 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 15 C -0.11 -2.16 4.89 30.62 0.15 -2.01 16 16 C -0.13 -1.93 6.08 30.66 0.19 -1.75 16 17 C 0.08 1.16 4.83 86.35 0.42 1.57 16 18 N -0.59 -16.29 2.97 -822.54 -2.44 -18.73 16 19 C 0.54 18.50 7.23 86.74 0.63 19.12 16 20 O -0.58 -28.02 15.62 -3.92 -0.06 -28.08 16 21 C -0.15 -3.70 5.23 -20.06 -0.10 -3.81 16 22 C -0.06 -0.64 7.35 22.52 0.17 -0.47 16 23 C -0.08 -0.31 10.03 22.23 0.22 -0.08 16 24 C -0.08 -0.72 10.01 22.36 0.22 -0.50 16 25 C 0.04 0.91 7.30 22.38 0.16 1.07 16 26 F -0.14 -3.28 17.18 44.97 0.77 -2.51 16 27 C 0.07 2.03 7.25 22.71 0.16 2.20 16 28 F -0.15 -5.65 16.11 44.97 0.72 -4.93 16 29 C 0.12 4.20 5.18 86.36 0.45 4.64 16 30 H 0.04 1.51 6.23 -2.39 -0.01 1.49 16 31 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 2.01 6.60 -2.39 -0.02 2.00 16 33 H 0.37 22.06 6.48 -92.70 -0.60 21.46 16 34 H 0.25 16.04 8.31 -92.71 -0.77 15.27 16 35 H 0.09 1.45 6.63 -2.39 -0.02 1.44 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.11 1.06 4.53 -2.38 -0.01 1.05 16 40 H 0.11 0.78 8.09 -2.39 -0.02 0.76 16 41 H 0.18 0.78 6.29 -2.91 -0.02 0.76 16 42 H 0.20 -1.26 8.06 -2.91 -0.02 -1.28 16 43 H 0.19 0.22 8.06 -2.91 -0.02 0.20 16 44 H 0.04 1.97 5.82 -2.38 -0.01 1.96 16 45 H 0.09 2.79 6.06 -2.39 -0.01 2.78 16 Total: -1.00 -92.46 363.14 4.80 -87.66 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.44 Total: 20.10 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 4.69 Total: 1.79 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -3.79 Total: -124.83 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.06 Total: -28.08 kcal Atomic # 9 Polarization: -8.93 SS G_CDS: 1.50 Total: -7.43 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.03 Total: 50.79 kcal Total: -92.46 4.80 -87.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482476654.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.221 kcal (2) G-P(sol) polarization free energy of solvation -92.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds