Wall clock time and date at job start Tue Mar 31 2020 20:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47553 * 2 1 4 4 N 1.46501 * 109.46906 * 239.99486 * 2 1 3 5 5 C 1.36930 * 119.99947 * 85.00518 * 4 2 1 6 6 H 1.08002 * 120.00104 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00506 * 179.97438 * 5 4 2 8 8 N 1.31626 * 119.99660 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00711 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47312 * 89.99657 * 9 7 5 11 11 H 1.48499 * 109.47439 * 210.00050 * 9 7 5 12 12 H 1.48502 * 109.46740 * 330.00088 * 9 7 5 13 13 C 1.53006 * 109.47142 * 119.99893 * 2 1 3 14 14 H 1.08994 * 110.91341 * 57.06403 * 13 2 1 15 15 C 1.55161 * 111.00016 * 293.16610 * 13 2 1 16 16 C 1.54326 * 102.94145 * 206.42295 * 15 13 2 17 17 N 1.47027 * 107.27116 * 22.19231 * 16 15 13 18 18 C 1.34774 * 125.64811 * 181.09094 * 17 16 15 19 19 O 1.21281 * 119.99554 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00126 * 359.96519 * 18 17 16 21 21 C 1.50701 * 109.46970 * 179.97438 * 20 18 17 22 22 C 1.38246 * 120.00164 * 100.00351 * 21 20 18 23 23 C 1.38213 * 120.07272 * 179.97438 * 22 21 20 24 24 C 1.38258 * 120.07013 * 0.02562 * 23 22 21 25 25 C 1.38369 * 119.99793 * 359.97438 * 24 23 22 26 26 F 1.35101 * 120.03339 * 180.02562 * 25 24 23 27 27 C 1.38371 * 119.99644 * 279.72369 * 21 20 18 28 28 F 1.35097 * 120.03714 * 359.97438 * 27 21 20 29 29 C 1.47421 * 108.70114 * 1.06363 * 17 16 15 30 30 H 1.08996 * 109.47347 * 185.26985 * 1 2 3 31 31 H 1.09006 * 109.46695 * 305.27084 * 1 2 3 32 32 H 1.08997 * 109.47165 * 65.26382 * 1 2 3 33 33 H 0.97003 * 120.00111 * 265.00043 * 4 2 1 34 34 H 0.96996 * 120.00122 * 179.97438 * 8 7 5 35 35 H 1.08995 * 110.72103 * 324.78888 * 15 13 2 36 36 H 1.09004 * 110.71852 * 88.06066 * 15 13 2 37 37 H 1.09001 * 109.88273 * 141.61119 * 16 15 13 38 38 H 1.09006 * 109.88367 * 262.62453 * 16 15 13 39 39 H 1.09003 * 109.47133 * 299.99865 * 20 18 17 40 40 H 1.09000 * 109.47140 * 59.99693 * 20 18 17 41 41 H 1.08005 * 119.96477 * 359.97438 * 22 21 20 42 42 H 1.08000 * 119.96536 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.00203 * 180.02562 * 24 23 22 44 44 H 1.09004 * 110.36726 * 217.03587 * 29 17 16 45 45 H 1.09000 * 110.37487 * 94.70694 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0077 -2.3757 6 1 1.8920 1.0401 -2.4244 7 6 2.6123 -0.6619 -3.5090 8 7 2.9262 -1.9388 -3.4496 9 14 2.7901 0.2696 -5.1183 10 1 4.1520 0.8556 -5.2032 11 1 2.5804 -0.6621 -6.2554 12 1 1.7793 1.3560 -5.1756 13 6 2.0400 -0.7213 1.2493 14 1 1.6478 -1.7369 1.2995 15 6 1.6881 0.0750 2.5337 16 6 2.7881 -0.3625 3.5238 17 7 3.9215 -0.8552 2.7274 18 6 5.0738 -1.3487 3.2225 19 8 5.9443 -1.7285 2.4683 20 6 5.2806 -1.4283 4.7130 21 6 6.6394 -2.0128 5.0011 22 6 7.6938 -1.1815 5.3304 23 6 8.9405 -1.7160 5.5954 24 6 9.1360 -3.0832 5.5313 25 6 8.0828 -3.9179 5.2019 26 9 8.2728 -5.2540 5.1395 27 6 6.8303 -3.3819 4.9417 28 9 5.7990 -4.1954 4.6260 29 6 3.5884 -0.7207 1.2976 30 1 -0.3634 -1.0233 0.0944 31 1 -0.3633 0.5935 0.8391 32 1 -0.3633 0.4300 -0.9333 33 1 2.2490 -1.6319 -1.1525 34 1 3.2495 -2.3961 -4.2415 35 1 1.7402 1.1479 2.3487 36 1 0.7021 -0.2062 2.9037 37 1 3.1020 0.4882 4.1287 38 1 2.4119 -1.1569 4.1685 39 1 5.2161 -0.4286 5.1427 40 1 4.5116 -2.0632 5.1531 41 1 7.5431 -0.1132 5.3807 42 1 9.7631 -1.0649 5.8521 43 1 10.1106 -3.4997 5.7390 44 1 3.9856 -1.5653 0.7344 45 1 3.9799 0.2170 0.9033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484349308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:56 Heat of formation + Delta-G solvation = -89.854260 kcal Electronic energy + Delta-G solvation = -29040.003553 eV Core-core repulsion = 24693.535790 eV Total energy + Delta-G solvation = -4346.467763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.61014 -48.68982 -40.22791 -39.11959 -37.66947 -35.18444 -33.21816 -32.42388 -30.58399 -30.56279 -29.01260 -28.37259 -27.47315 -24.00538 -23.59711 -23.09752 -22.24101 -21.48194 -19.65668 -19.21873 -18.06819 -17.56057 -17.37843 -17.12802 -16.87441 -16.34452 -16.11029 -15.30334 -15.12768 -15.06954 -14.82439 -14.56343 -14.28484 -13.94121 -13.79462 -13.61337 -13.24721 -13.11709 -12.81925 -12.67034 -12.42202 -12.31211 -12.13924 -12.07448 -11.88503 -11.67860 -11.52137 -11.33103 -10.87948 -10.76946 -10.59137 -10.53266 -10.21347 -9.94084 -9.82097 -9.60917 -9.16588 -8.96118 -8.89666 -8.51345 -6.94570 -5.73552 -3.02922 0.66523 0.69693 2.67225 2.89324 3.23602 3.45487 3.50141 3.52248 3.55030 4.07300 4.18074 4.36484 4.46116 4.60983 4.62531 4.67263 4.75415 4.90003 4.96195 5.05845 5.09439 5.31109 5.40814 5.48817 5.53624 5.56833 5.66050 5.66719 5.78416 5.88454 5.89164 5.92421 5.93153 6.05937 6.16457 6.32873 6.37402 6.39558 6.47695 6.57386 6.63646 6.85128 7.07770 7.60680 7.71770 8.22295 8.44240 9.55521 10.12413 10.46682 11.48871 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.002591 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.315216 B =10805.460670 C =11822.834980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.124 4.124 16 C 0.099 3.901 17 N -0.618 5.618 18 C 0.526 3.474 19 O -0.529 6.529 20 C -0.099 4.099 21 C -0.072 4.072 22 C -0.090 4.090 23 C -0.100 4.100 24 C -0.128 4.128 25 C 0.067 3.933 26 F -0.129 7.129 27 C 0.086 3.914 28 F -0.124 7.124 29 C 0.121 3.879 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.055 0.945 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.083 0.917 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.905 3.006 25.530 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.163 4.163 16 C -0.024 4.024 17 N -0.353 5.353 18 C 0.314 3.686 19 O -0.405 6.405 20 C -0.139 4.139 21 C -0.073 4.073 22 C -0.108 4.108 23 C -0.118 4.118 24 C -0.147 4.147 25 C 0.047 3.953 26 F -0.108 7.108 27 C 0.066 3.934 28 F -0.102 7.102 29 C -0.001 4.001 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.102 0.898 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.428 2.798 24.979 25.944 hybrid contribution -0.089 -0.319 -1.057 1.107 sum 6.339 2.479 23.922 24.871 Atomic orbital electron populations 1.22444 0.99105 1.00518 1.00355 1.20155 0.91898 0.95114 0.85373 0.93340 1.42423 1.78155 1.10739 1.05279 1.19184 1.36737 0.93797 0.87300 0.91247 1.24738 1.02124 0.95940 0.98041 1.69660 1.50652 1.08641 1.28904 0.86227 0.77764 0.78577 0.83823 1.21744 1.21837 1.20834 1.22688 0.94147 1.00237 0.95166 0.90135 1.22674 0.97653 1.01018 0.94909 1.22083 0.87135 0.98529 0.94683 1.48588 1.15459 1.62297 1.08948 1.19913 0.81126 0.77718 0.89870 1.90774 1.41883 1.47681 1.60148 1.20607 0.94821 1.03768 0.94678 1.19280 0.96662 0.90681 1.00716 1.20993 0.91620 1.00099 0.98130 1.21027 0.97516 0.94096 0.99210 1.21089 0.98319 0.93745 1.01497 1.17652 0.93430 0.78336 1.05891 1.91532 1.95612 1.29528 1.94108 1.17480 0.84004 0.88437 1.03485 1.91534 1.56413 1.72072 1.90221 1.22261 0.95027 1.03124 0.79644 0.93648 0.94447 0.92580 0.78255 0.93501 0.90315 0.90041 0.91597 0.91586 0.87108 0.87492 0.84264 0.84119 0.83733 0.89836 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.27 37.16 0.34 -2.41 16 2 C 0.18 3.43 2.41 -67.93 -0.16 3.26 16 3 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 4 N -0.72 -17.65 4.80 -53.42 -0.26 -17.90 16 5 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 9 Si 0.90 22.56 29.55 -169.99 -5.02 17.53 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C -0.10 -1.56 2.62 -88.46 -0.23 -1.80 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 15 C -0.12 -1.34 5.71 -24.89 -0.14 -1.48 16 16 C 0.10 0.97 6.49 -3.06 -0.02 0.95 16 17 N -0.62 -8.70 3.33 -170.51 -0.57 -9.27 16 18 C 0.53 7.86 7.84 -10.99 -0.09 7.77 16 19 O -0.53 -10.45 16.21 5.56 0.09 -10.36 16 20 C -0.10 -0.99 4.75 -29.04 -0.14 -1.13 16 21 C -0.07 -0.79 4.42 -104.57 -0.46 -1.26 16 22 C -0.09 -0.77 9.67 -39.59 -0.38 -1.15 16 23 C -0.10 -0.75 10.04 -39.58 -0.40 -1.14 16 24 C -0.13 -1.12 10.02 -39.53 -0.40 -1.52 16 25 C 0.07 0.80 7.31 -39.36 -0.29 0.51 16 26 F -0.13 -1.68 17.18 2.25 0.04 -1.65 16 27 C 0.09 1.12 7.14 -39.36 -0.28 0.84 16 28 F -0.12 -1.84 16.57 2.25 0.04 -1.81 16 29 C 0.12 2.08 6.07 -2.53 -0.02 2.06 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.50 7.69 -51.93 -0.40 0.10 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.08 0.81 8.01 -51.93 -0.42 0.40 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.11 0.72 8.00 -51.93 -0.42 0.31 16 40 H 0.11 0.93 7.93 -51.93 -0.41 0.51 16 41 H 0.14 0.82 8.04 -52.48 -0.42 0.40 16 42 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 44 H 0.08 1.74 8.04 -51.93 -0.42 1.32 16 45 H 0.07 1.32 8.04 -51.93 -0.42 0.90 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -34.61 383.91 -8.64 -43.25 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.56 Total: 5.72 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.91 Total: -3.62 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.10 Total: -54.86 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.08 Total: -3.45 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.61 -8.64 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484349308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.602 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds