Wall clock time and date at job start Tue Mar 31 2020 20:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47553 * 2 1 4 4 N 1.46501 * 109.46906 * 239.99486 * 2 1 3 5 5 C 1.36930 * 119.99947 * 85.00518 * 4 2 1 6 6 H 1.08002 * 120.00104 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00506 * 179.97438 * 5 4 2 8 8 N 1.31626 * 119.99660 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00711 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47312 * 89.99657 * 9 7 5 11 11 H 1.48499 * 109.47439 * 210.00050 * 9 7 5 12 12 H 1.48502 * 109.46740 * 330.00088 * 9 7 5 13 13 C 1.53006 * 109.47142 * 119.99893 * 2 1 3 14 14 H 1.08994 * 110.91341 * 57.06403 * 13 2 1 15 15 C 1.55161 * 111.00016 * 293.16610 * 13 2 1 16 16 C 1.54326 * 102.94145 * 206.42295 * 15 13 2 17 17 N 1.47027 * 107.27116 * 22.19231 * 16 15 13 18 18 C 1.34774 * 125.64811 * 181.09094 * 17 16 15 19 19 O 1.21281 * 119.99554 * 179.97438 * 18 17 16 20 20 C 1.50697 * 120.00126 * 359.96519 * 18 17 16 21 21 C 1.50701 * 109.46970 * 179.97438 * 20 18 17 22 22 C 1.38246 * 120.00164 * 100.00351 * 21 20 18 23 23 C 1.38213 * 120.07272 * 179.97438 * 22 21 20 24 24 C 1.38258 * 120.07013 * 0.02562 * 23 22 21 25 25 C 1.38369 * 119.99793 * 359.97438 * 24 23 22 26 26 F 1.35101 * 120.03339 * 180.02562 * 25 24 23 27 27 C 1.38371 * 119.99644 * 279.72369 * 21 20 18 28 28 F 1.35097 * 120.03714 * 359.97438 * 27 21 20 29 29 C 1.47421 * 108.70114 * 1.06363 * 17 16 15 30 30 H 1.08996 * 109.47347 * 185.26985 * 1 2 3 31 31 H 1.09006 * 109.46695 * 305.27084 * 1 2 3 32 32 H 1.08997 * 109.47165 * 65.26382 * 1 2 3 33 33 H 0.97003 * 120.00111 * 265.00043 * 4 2 1 34 34 H 0.96996 * 120.00122 * 179.97438 * 8 7 5 35 35 H 1.08995 * 110.72103 * 324.78888 * 15 13 2 36 36 H 1.09004 * 110.71852 * 88.06066 * 15 13 2 37 37 H 1.09001 * 109.88273 * 141.61119 * 16 15 13 38 38 H 1.09006 * 109.88367 * 262.62453 * 16 15 13 39 39 H 1.09003 * 109.47133 * 299.99865 * 20 18 17 40 40 H 1.09000 * 109.47140 * 59.99693 * 20 18 17 41 41 H 1.08005 * 119.96477 * 359.97438 * 22 21 20 42 42 H 1.08000 * 119.96536 * 179.97438 * 23 22 21 43 43 H 1.08003 * 120.00203 * 180.02562 * 24 23 22 44 44 H 1.09004 * 110.36726 * 217.03587 * 29 17 16 45 45 H 1.09000 * 110.37487 * 94.70694 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0077 -2.3757 6 1 1.8920 1.0401 -2.4244 7 6 2.6123 -0.6619 -3.5090 8 7 2.9262 -1.9388 -3.4496 9 14 2.7901 0.2696 -5.1183 10 1 4.1520 0.8556 -5.2032 11 1 2.5804 -0.6621 -6.2554 12 1 1.7793 1.3560 -5.1756 13 6 2.0400 -0.7213 1.2493 14 1 1.6478 -1.7369 1.2995 15 6 1.6881 0.0750 2.5337 16 6 2.7881 -0.3625 3.5238 17 7 3.9215 -0.8552 2.7274 18 6 5.0738 -1.3487 3.2225 19 8 5.9443 -1.7285 2.4683 20 6 5.2806 -1.4283 4.7130 21 6 6.6394 -2.0128 5.0011 22 6 7.6938 -1.1815 5.3304 23 6 8.9405 -1.7160 5.5954 24 6 9.1360 -3.0832 5.5313 25 6 8.0828 -3.9179 5.2019 26 9 8.2728 -5.2540 5.1395 27 6 6.8303 -3.3819 4.9417 28 9 5.7990 -4.1954 4.6260 29 6 3.5884 -0.7207 1.2976 30 1 -0.3634 -1.0233 0.0944 31 1 -0.3633 0.5935 0.8391 32 1 -0.3633 0.4300 -0.9333 33 1 2.2490 -1.6319 -1.1525 34 1 3.2495 -2.3961 -4.2415 35 1 1.7402 1.1479 2.3487 36 1 0.7021 -0.2062 2.9037 37 1 3.1020 0.4882 4.1287 38 1 2.4119 -1.1569 4.1685 39 1 5.2161 -0.4286 5.1427 40 1 4.5116 -2.0632 5.1531 41 1 7.5431 -0.1132 5.3807 42 1 9.7631 -1.0649 5.8521 43 1 10.1106 -3.4997 5.7390 44 1 3.9856 -1.5653 0.7344 45 1 3.9799 0.2170 0.9033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484349308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:55 Heat of formation + Delta-G solvation = -111.914180 kcal Electronic energy + Delta-G solvation = -29040.960143 eV Core-core repulsion = 24693.535790 eV Total energy + Delta-G solvation = -4347.424353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.55473 -49.65051 -41.29975 -39.96486 -38.88986 -36.77383 -34.37946 -33.89475 -32.02533 -31.29925 -30.06756 -29.98339 -28.45438 -25.91301 -24.72514 -23.85654 -23.07626 -22.81908 -21.07739 -20.28502 -19.16928 -18.92464 -18.36922 -18.22742 -17.92093 -17.35239 -17.31456 -16.58532 -16.35894 -16.05771 -15.79450 -15.64822 -15.48650 -15.46765 -15.14813 -14.58183 -14.52398 -14.27985 -14.02094 -13.83012 -13.57857 -13.40210 -13.19446 -13.06500 -13.02105 -12.85660 -12.71805 -12.67433 -12.37139 -12.25156 -12.19863 -12.03078 -11.67210 -11.52862 -11.37364 -11.05536 -10.93668 -9.93277 -9.75680 -9.66365 -8.99476 -7.92913 -5.20769 -0.07197 -0.05920 1.44937 1.47097 1.55044 1.56804 1.93359 2.43018 2.56128 2.79600 3.25136 3.39648 3.42521 3.47215 3.69213 3.73461 3.84648 3.88515 3.94447 4.16927 4.19334 4.27731 4.37605 4.44389 4.47015 4.57239 4.65598 4.73518 4.79499 4.86130 4.88624 4.91582 4.97633 5.01960 5.11102 5.14287 5.15452 5.25014 5.26817 5.36643 5.42531 5.53095 5.66323 5.76324 6.29042 6.53717 7.10990 7.34397 8.12927 8.33461 9.30906 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.002591 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.315216 B =10805.460670 C =11822.834980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 H 0.049 0.951 4 N -0.740 5.740 5 C -0.230 4.230 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.974 5.974 9 Si 0.969 3.031 10 H -0.291 1.291 11 H -0.299 1.299 12 H -0.265 1.265 13 C -0.095 4.095 14 H 0.070 0.930 15 C -0.112 4.112 16 C 0.094 3.906 17 N -0.618 5.618 18 C 0.516 3.484 19 O -0.592 6.592 20 C -0.087 4.087 21 C -0.088 4.088 22 C -0.086 4.086 23 C -0.089 4.089 24 C -0.124 4.124 25 C 0.035 3.965 26 F -0.146 7.146 27 C 0.047 3.953 28 F -0.148 7.148 29 C 0.126 3.874 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.032 0.968 33 H 0.368 0.632 34 H 0.247 0.753 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.158 0.842 40 H 0.121 0.879 41 H 0.174 0.826 42 H 0.182 0.818 43 H 0.170 0.830 44 H 0.028 0.972 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.386 6.429 28.793 29.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.070 3.930 3 H 0.067 0.933 4 N -0.379 5.379 5 C -0.362 4.362 6 H 0.096 0.904 7 C -0.274 4.274 8 N -0.625 5.625 9 Si 0.799 3.201 10 H -0.219 1.219 11 H -0.226 1.226 12 H -0.190 1.190 13 C -0.115 4.115 14 H 0.089 0.911 15 C -0.150 4.150 16 C -0.027 4.027 17 N -0.351 5.351 18 C 0.306 3.694 19 O -0.473 6.473 20 C -0.126 4.126 21 C -0.089 4.089 22 C -0.104 4.104 23 C -0.107 4.107 24 C -0.142 4.142 25 C 0.015 3.985 26 F -0.125 7.125 27 C 0.027 3.973 28 F -0.126 7.126 29 C 0.003 3.997 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.199 0.801 34 H 0.056 0.944 35 H 0.109 0.891 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.175 0.825 40 H 0.139 0.861 41 H 0.192 0.808 42 H 0.200 0.800 43 H 0.187 0.813 44 H 0.047 0.953 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.844 6.284 28.316 29.587 hybrid contribution 0.109 -1.314 -1.990 2.387 sum 5.953 4.970 26.326 27.444 Atomic orbital electron populations 1.22271 0.96942 1.00972 1.01052 1.20452 0.93199 0.94797 0.84545 0.93317 1.42695 1.78469 1.10208 1.06564 1.19612 1.34186 0.94139 0.88233 0.90364 1.25555 1.03413 0.96827 1.01585 1.69839 1.53014 1.10410 1.29228 0.85192 0.77801 0.77511 0.79624 1.21865 1.22614 1.18962 1.22506 0.92312 1.00345 0.96325 0.91118 1.22723 0.99543 1.00881 0.91882 1.22451 0.85175 1.00767 0.94309 1.48701 1.16602 1.61969 1.07844 1.20922 0.80300 0.76293 0.91849 1.90742 1.44105 1.50300 1.62127 1.20672 0.94836 1.06586 0.90457 1.19578 0.98148 0.89995 1.01204 1.21504 0.91106 1.01500 0.96288 1.21566 0.98370 0.93787 0.96972 1.21497 0.98349 0.94285 1.00110 1.18116 0.94356 0.78182 1.07831 1.91476 1.95717 1.30801 1.94476 1.18003 0.84082 0.89550 1.05654 1.91456 1.57439 1.72911 1.90820 1.21916 0.96402 0.99762 0.81656 0.94057 0.89921 0.94873 0.80104 0.94383 0.89060 0.87107 0.87619 0.89161 0.82463 0.86057 0.80846 0.80033 0.81276 0.95285 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 9.27 71.98 0.67 -4.18 16 2 C 0.18 6.52 2.41 44.99 0.11 6.63 16 3 H 0.05 1.79 8.04 -2.39 -0.02 1.77 16 4 N -0.74 -37.26 4.80 -322.93 -1.55 -38.81 16 5 C -0.23 -12.81 9.93 84.03 0.83 -11.97 16 6 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 7 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 8 N -0.97 -62.24 13.06 21.65 0.28 -61.96 16 9 Si 0.97 47.50 29.55 68.60 2.03 49.53 16 10 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 11 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 12 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 13 C -0.09 -2.84 2.62 -9.40 -0.02 -2.86 16 14 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 15 C -0.11 -1.95 5.71 31.78 0.18 -1.77 16 16 C 0.09 1.44 6.49 86.73 0.56 2.01 16 17 N -0.62 -16.80 3.33 -811.77 -2.70 -19.50 16 18 C 0.52 15.26 7.84 87.66 0.69 15.95 16 19 O -0.59 -24.67 16.21 -3.03 -0.05 -24.71 16 20 C -0.09 -1.51 4.75 29.10 0.14 -1.37 16 21 C -0.09 -1.82 4.42 -19.83 -0.09 -1.91 16 22 C -0.09 -1.18 9.67 22.27 0.22 -0.97 16 23 C -0.09 -1.03 10.04 22.27 0.22 -0.80 16 24 C -0.12 -1.99 10.02 22.31 0.22 -1.77 16 25 C 0.04 0.87 7.31 22.41 0.16 1.03 16 26 F -0.15 -4.08 17.18 44.97 0.77 -3.31 16 27 C 0.05 1.27 7.14 22.41 0.16 1.43 16 28 F -0.15 -4.73 16.57 44.97 0.75 -3.98 16 29 C 0.13 4.50 6.07 86.86 0.53 5.03 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.88 7.69 -2.38 -0.02 1.86 16 32 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.37 20.61 7.80 -92.71 -0.72 19.89 16 34 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.09 1.42 8.01 -2.39 -0.02 1.40 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.16 1.21 8.00 -2.39 -0.02 1.19 16 40 H 0.12 1.78 7.93 -2.39 -0.02 1.76 16 41 H 0.17 1.14 8.04 -2.91 -0.02 1.11 16 42 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 43 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 44 H 0.03 1.32 8.04 -2.38 -0.02 1.30 16 45 H 0.05 2.08 8.04 -2.39 -0.02 2.06 16 Total: -1.00 -85.06 383.91 4.86 -80.20 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.28 Total: 22.46 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 5.05 Total: 0.09 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -3.97 Total: -120.27 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.71 kcal Atomic # 9 Polarization: -8.81 SS G_CDS: 1.52 Total: -7.29 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -85.06 4.86 -80.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484349308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.712 kcal (2) G-P(sol) polarization free energy of solvation -85.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds