Wall clock time and date at job start Tue Mar 31 2020 20:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.50701 * 109.47212 * 295.00231 * 4 2 1 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.46921 * 120.63059 * 359.72315 * 7 5 4 9 9 C 1.53629 * 108.54224 * 126.36706 * 8 7 5 10 10 C 1.53041 * 109.24036 * 54.85265 * 9 8 7 11 11 O 1.42901 * 109.44797 * 58.52800 * 10 9 8 12 12 C 1.52999 * 109.45914 * 178.48863 * 10 9 8 13 13 N 1.46499 * 109.47379 * 305.07194 * 12 10 9 14 14 C 1.36942 * 119.99991 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99830 * 0.02562 * 14 13 12 16 16 C 1.38809 * 119.99788 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00250 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00027 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46723 * 59.99871 * 18 16 14 20 20 H 1.48496 * 109.47331 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47347 * 300.00629 * 18 16 14 22 22 C 1.53038 * 109.54157 * 298.51402 * 10 9 8 23 23 C 1.46926 * 120.62707 * 180.02562 * 7 5 4 24 24 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 25 25 F 1.39907 * 109.46989 * 299.99498 * 24 2 1 26 26 F 1.39906 * 109.47455 * 59.99395 * 24 2 1 27 27 F 1.39895 * 109.47504 * 179.97438 * 24 2 1 28 28 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 30 30 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 31 31 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 32 32 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 33 33 H 1.08998 * 109.58542 * 246.19788 * 8 7 5 34 34 H 1.08999 * 109.58977 * 6.62636 * 8 7 5 35 35 H 1.08999 * 109.63120 * 294.86485 * 9 8 7 36 36 H 1.09000 * 109.43244 * 174.72381 * 9 8 7 37 37 H 0.96701 * 113.99783 * 59.93929 * 11 10 9 38 38 H 1.09005 * 109.46588 * 65.07082 * 12 10 9 39 39 H 1.09001 * 109.47684 * 185.06749 * 12 10 9 40 40 H 0.97004 * 119.99900 * 0.02562 * 13 12 10 41 41 H 0.97003 * 120.00079 * 179.97438 * 17 16 14 42 42 H 1.09002 * 109.49670 * 301.41329 * 22 10 9 43 43 H 1.08995 * 109.49620 * 181.31870 * 22 10 9 44 44 H 1.09003 * 109.58886 * 353.37482 * 23 7 5 45 45 H 1.08997 * 109.58814 * 113.80062 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0109 1.0870 2.3632 7 7 1.9845 -0.3918 3.7002 8 6 2.7419 -1.6413 3.8538 9 6 3.9906 -1.3546 4.7016 10 6 3.5659 -0.7108 6.0234 11 8 2.6737 -1.5874 6.7145 12 6 4.8028 -0.4576 6.8876 13 7 5.5444 -1.7095 7.0577 14 6 6.6960 -1.7279 7.7986 15 1 7.0571 -0.8196 8.2578 16 6 7.3984 -2.9142 7.9601 17 7 6.9579 -4.0212 7.4008 18 14 8.9688 -2.9395 8.9713 19 1 8.6701 -2.5074 10.3603 20 1 9.5232 -4.3170 8.9903 21 1 9.9612 -2.0142 8.3678 22 6 2.8596 0.6174 5.7422 23 6 1.6025 0.3556 4.9061 24 6 2.0401 -0.7211 -1.2492 25 9 1.5738 -2.0402 -1.2492 26 9 1.5736 -0.0617 -2.3916 27 9 3.4390 -0.7207 -1.2495 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.1264 -0.7993 1.2056 32 1 1.6054 -1.7197 1.2951 33 1 2.1213 -2.3858 4.3526 34 1 3.0414 -2.0102 2.8728 35 1 4.6515 -0.6761 4.1622 36 1 4.5141 -2.2891 4.9036 37 1 3.0554 -2.4504 6.9260 38 1 5.4412 0.2798 6.4009 39 1 4.4938 -0.0829 7.8635 40 1 5.2202 -2.5252 6.6448 41 1 7.4490 -4.8501 7.5133 42 1 3.5312 1.2774 5.1931 43 1 2.5782 1.0865 6.6850 44 1 1.1499 1.3050 4.6195 45 1 0.8911 -0.2296 5.4887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484959996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:01 Heat of formation + Delta-G solvation = -237.621171 kcal Electronic energy + Delta-G solvation = -30810.423723 eV Core-core repulsion = 26026.779081 eV Total energy + Delta-G solvation = -4783.644642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.38485 -47.86265 -47.84578 -40.57745 -38.76903 -35.85243 -35.19552 -34.09303 -32.13802 -31.33235 -30.37515 -28.56272 -26.72455 -26.35707 -23.92973 -23.43547 -22.30094 -21.44073 -20.26250 -19.20960 -18.75299 -18.47968 -18.02813 -17.53050 -16.67568 -16.25274 -15.87826 -15.68834 -15.03976 -14.86127 -14.79706 -14.47177 -14.28623 -14.21652 -14.18421 -14.01421 -13.99707 -13.89571 -13.49929 -13.36428 -13.30919 -12.93396 -12.65357 -12.55248 -12.37475 -11.93974 -11.79924 -11.65058 -11.59027 -11.51256 -11.14268 -11.10006 -11.06212 -10.86347 -10.37292 -10.21308 -9.91775 -9.72626 -9.49222 -8.99116 -8.65711 -7.06460 -5.88545 -3.17751 2.38490 2.41900 2.86107 3.38024 3.43025 3.43478 3.49898 3.68129 3.76201 4.27350 4.43413 4.47372 4.50057 4.51737 4.73834 4.85258 4.94743 5.05664 5.10762 5.13408 5.16765 5.34000 5.40878 5.46208 5.51630 5.56156 5.57532 5.73122 5.80867 5.89068 5.93788 5.97354 6.04986 6.27798 6.31165 6.48664 6.62993 6.64145 7.27188 7.60339 7.97264 8.01055 8.30308 9.41358 9.94413 10.28681 11.34114 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.002574 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.121019 B =10876.070665 C =11981.078699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.117 4.117 3 H 0.123 0.877 4 C -0.146 4.146 5 C 0.522 3.478 6 O -0.545 6.545 7 N -0.603 5.603 8 C 0.108 3.892 9 C -0.158 4.158 10 C 0.130 3.870 11 O -0.561 6.561 12 C 0.128 3.872 13 N -0.730 5.730 14 C -0.242 4.242 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.934 5.934 18 Si 0.909 3.091 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.286 1.286 22 C -0.117 4.117 23 C 0.118 3.882 24 C 0.453 3.547 25 F -0.182 7.182 26 F -0.182 7.182 27 F -0.183 7.183 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.383 0.617 38 H 0.026 0.974 39 H 0.029 0.971 40 H 0.381 0.619 41 H 0.257 0.743 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.454 6.291 -15.254 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.137 4.137 3 H 0.141 0.859 4 C -0.186 4.186 5 C 0.310 3.690 6 O -0.424 6.424 7 N -0.335 5.335 8 C -0.014 4.014 9 C -0.196 4.196 10 C 0.089 3.911 11 O -0.369 6.369 12 C 0.000 4.000 13 N -0.376 5.376 14 C -0.373 4.373 15 H 0.088 0.912 16 C -0.207 4.207 17 N -0.583 5.583 18 Si 0.740 3.260 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C -0.155 4.155 23 C -0.004 4.004 24 C 0.399 3.601 25 F -0.164 7.164 26 F -0.164 7.164 27 F -0.164 7.164 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.232 0.768 38 H 0.043 0.957 39 H 0.047 0.953 40 H 0.216 0.784 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.031 7.358 -15.288 22.017 hybrid contribution 1.613 -1.092 0.309 1.972 sum -12.418 6.266 -14.979 20.441 Atomic orbital electron populations 1.22003 0.90918 1.03416 1.05191 1.22169 1.00330 1.01688 0.89509 0.85943 1.21762 1.04112 1.00836 0.91845 1.20143 0.79321 0.85313 0.84213 1.90657 1.40791 1.24733 1.86189 1.48131 1.54789 1.24846 1.05754 1.21916 0.93255 0.85461 1.00816 1.22625 0.96782 1.03628 0.96589 1.21288 0.89598 0.89804 0.90430 1.86369 1.42240 1.29662 1.78591 1.21328 0.91088 0.90882 0.96707 1.42321 1.27408 1.05479 1.62387 1.19157 0.99546 0.94628 1.24003 0.91210 1.24724 0.99418 0.95563 1.00992 1.69615 1.40841 0.99169 1.48652 0.86245 0.83179 0.76591 0.80028 1.21215 1.21625 1.21236 1.21856 0.97150 0.95944 1.00585 1.21556 0.96912 0.97292 0.84590 1.20649 0.75484 0.77740 0.86264 1.93176 1.88436 1.37940 1.96822 1.93178 1.88481 1.80754 1.53968 1.93195 1.30022 1.96410 1.96794 0.91783 0.88331 0.91428 0.87416 0.87452 0.90287 0.89991 0.90695 0.88831 0.76807 0.95671 0.95273 0.78445 0.93336 0.90442 0.89928 0.89272 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 8.69 37.16 0.32 -0.98 16 2 C -0.12 -0.99 2.01 -90.62 -0.18 -1.18 16 3 H 0.12 1.06 7.96 -51.92 -0.41 0.64 16 4 C -0.15 -1.25 3.28 -27.88 -0.09 -1.34 16 5 C 0.52 5.88 7.42 -10.98 -0.08 5.80 16 6 O -0.54 -7.42 13.38 5.56 0.07 -7.34 16 7 N -0.60 -6.86 2.97 -172.48 -0.51 -7.37 16 8 C 0.11 1.17 6.13 -3.49 -0.02 1.15 16 9 C -0.16 -2.13 4.89 -26.38 -0.13 -2.26 16 10 C 0.13 1.91 0.71 -90.58 -0.06 1.84 16 11 O -0.56 -8.53 11.70 -35.23 -0.41 -8.94 16 12 C 0.13 2.39 5.43 -4.04 -0.02 2.37 16 13 N -0.73 -16.84 5.07 -59.91 -0.30 -17.15 16 14 C -0.24 -6.45 9.99 -15.06 -0.15 -6.61 16 15 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 16 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 17 N -0.93 -26.62 13.06 55.49 0.72 -25.90 16 18 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 C -0.12 -1.48 5.11 -26.59 -0.14 -1.62 16 23 C 0.12 1.42 6.19 -3.69 -0.02 1.39 16 24 C 0.45 4.11 2.69 37.15 0.10 4.21 16 25 F -0.18 -1.72 16.37 2.25 0.04 -1.69 16 26 F -0.18 -1.76 16.80 2.25 0.04 -1.73 16 27 F -0.18 -1.82 16.71 2.25 0.04 -1.79 16 28 H 0.06 0.48 7.80 -51.92 -0.41 0.08 16 29 H 0.10 0.96 5.95 -51.93 -0.31 0.65 16 30 H 0.07 0.50 7.80 -51.93 -0.41 0.10 16 31 H 0.11 0.85 7.23 -51.93 -0.38 0.47 16 32 H 0.11 0.78 7.73 -51.93 -0.40 0.38 16 33 H 0.08 0.85 7.81 -51.93 -0.41 0.45 16 34 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.44 6.53 -51.93 -0.34 1.10 16 37 H 0.38 5.81 8.19 45.56 0.37 6.19 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.38 8.87 5.55 -40.82 -0.23 8.65 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.09 1.08 7.01 -51.93 -0.36 0.72 16 45 H 0.08 0.94 7.81 -51.93 -0.41 0.54 16 LS Contribution 365.10 15.07 5.50 5.50 Total: -1.00 -29.97 365.10 -6.06 -36.03 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -5.64 Total: 11.30 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -0.57 Total: 2.40 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.09 Total: -50.42 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.34 Total: -16.28 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.11 Total: -5.20 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.97 -6.06 -36.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484959996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.590 kcal (2) G-P(sol) polarization free energy of solvation -29.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds