Wall clock time and date at job start Tue Mar 31 2020 20:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 C 1.50701 * 109.47212 * 295.00231 * 4 2 1 6 6 O 1.21280 * 119.99781 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.46921 * 120.63059 * 359.72315 * 7 5 4 9 9 C 1.53629 * 108.54224 * 126.36706 * 8 7 5 10 10 C 1.53041 * 109.24036 * 54.85265 * 9 8 7 11 11 O 1.42901 * 109.44797 * 58.52800 * 10 9 8 12 12 C 1.52999 * 109.45914 * 178.48863 * 10 9 8 13 13 N 1.46499 * 109.47379 * 305.07194 * 12 10 9 14 14 C 1.36942 * 119.99991 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99830 * 0.02562 * 14 13 12 16 16 C 1.38809 * 119.99788 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00250 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00027 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46723 * 59.99871 * 18 16 14 20 20 H 1.48496 * 109.47331 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47347 * 300.00629 * 18 16 14 22 22 C 1.53038 * 109.54157 * 298.51402 * 10 9 8 23 23 C 1.46926 * 120.62707 * 180.02562 * 7 5 4 24 24 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 25 25 F 1.39907 * 109.46989 * 299.99498 * 24 2 1 26 26 F 1.39906 * 109.47455 * 59.99395 * 24 2 1 27 27 F 1.39895 * 109.47504 * 179.97438 * 24 2 1 28 28 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 30 30 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 31 31 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 32 32 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 33 33 H 1.08998 * 109.58542 * 246.19788 * 8 7 5 34 34 H 1.08999 * 109.58977 * 6.62636 * 8 7 5 35 35 H 1.08999 * 109.63120 * 294.86485 * 9 8 7 36 36 H 1.09000 * 109.43244 * 174.72381 * 9 8 7 37 37 H 0.96701 * 113.99783 * 59.93929 * 11 10 9 38 38 H 1.09005 * 109.46588 * 65.07082 * 12 10 9 39 39 H 1.09001 * 109.47684 * 185.06749 * 12 10 9 40 40 H 0.97004 * 119.99900 * 0.02562 * 13 12 10 41 41 H 0.97003 * 120.00079 * 179.97438 * 17 16 14 42 42 H 1.09002 * 109.49670 * 301.41329 * 22 10 9 43 43 H 1.08995 * 109.49620 * 181.31870 * 22 10 9 44 44 H 1.09003 * 109.58886 * 353.37482 * 23 7 5 45 45 H 1.08997 * 109.58814 * 113.80062 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0109 1.0870 2.3632 7 7 1.9845 -0.3918 3.7002 8 6 2.7419 -1.6413 3.8538 9 6 3.9906 -1.3546 4.7016 10 6 3.5659 -0.7108 6.0234 11 8 2.6737 -1.5874 6.7145 12 6 4.8028 -0.4576 6.8876 13 7 5.5444 -1.7095 7.0577 14 6 6.6960 -1.7279 7.7986 15 1 7.0571 -0.8196 8.2578 16 6 7.3984 -2.9142 7.9601 17 7 6.9579 -4.0212 7.4008 18 14 8.9688 -2.9395 8.9713 19 1 8.6701 -2.5074 10.3603 20 1 9.5232 -4.3170 8.9903 21 1 9.9612 -2.0142 8.3678 22 6 2.8596 0.6174 5.7422 23 6 1.6025 0.3556 4.9061 24 6 2.0401 -0.7211 -1.2492 25 9 1.5738 -2.0402 -1.2492 26 9 1.5736 -0.0617 -2.3916 27 9 3.4390 -0.7207 -1.2495 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.1264 -0.7993 1.2056 32 1 1.6054 -1.7197 1.2951 33 1 2.1213 -2.3858 4.3526 34 1 3.0414 -2.0102 2.8728 35 1 4.6515 -0.6761 4.1622 36 1 4.5141 -2.2891 4.9036 37 1 3.0554 -2.4504 6.9260 38 1 5.4412 0.2798 6.4009 39 1 4.4938 -0.0829 7.8635 40 1 5.2202 -2.5252 6.6448 41 1 7.4490 -4.8501 7.5133 42 1 3.5312 1.2774 5.1931 43 1 2.5782 1.0865 6.6850 44 1 1.1499 1.3050 4.6195 45 1 0.8911 -0.2296 5.4887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484959996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:00 Heat of formation + Delta-G solvation = -257.039476 kcal Electronic energy + Delta-G solvation = -30811.265764 eV Core-core repulsion = 26026.779081 eV Total energy + Delta-G solvation = -4784.486683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.11606 -48.60487 -48.57509 -41.53680 -39.88840 -36.94562 -36.02815 -35.77398 -33.50905 -32.63413 -31.74863 -29.44733 -27.94435 -27.24403 -25.50891 -24.47878 -23.53710 -22.40069 -21.35518 -20.09998 -19.52610 -19.43750 -19.26628 -18.75492 -17.55172 -17.29349 -16.89451 -16.73649 -16.66000 -15.84195 -15.77648 -15.60698 -15.52922 -15.04656 -15.02496 -14.97279 -14.84418 -14.76091 -14.70787 -14.56016 -14.29353 -14.06298 -14.00313 -13.59795 -13.26218 -13.14858 -12.98042 -12.77692 -12.71902 -12.38652 -12.36751 -12.25097 -12.24730 -12.16432 -12.09679 -11.95438 -11.28853 -10.96279 -10.89855 -10.67538 -9.63817 -9.01691 -7.96685 -5.24601 1.48758 1.49807 1.54837 1.56059 1.64286 2.02085 2.55145 2.78155 2.96531 3.06226 3.26957 3.40973 3.50660 3.66448 3.68627 3.81682 3.84003 3.91671 4.06306 4.18603 4.25392 4.35675 4.44874 4.50310 4.51974 4.60419 4.73821 4.78699 4.81446 4.84920 4.90790 4.92562 5.01013 5.08831 5.18830 5.26337 5.34650 5.49186 5.52850 6.25604 6.38090 6.76035 7.09043 7.33873 8.04698 8.30503 9.25596 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016436 B = 0.002574 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.121019 B =10876.070665 C =11981.078699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 H 0.120 0.880 4 C -0.143 4.143 5 C 0.522 3.478 6 O -0.569 6.569 7 N -0.604 5.604 8 C 0.115 3.885 9 C -0.152 4.152 10 C 0.137 3.863 11 O -0.562 6.562 12 C 0.127 3.873 13 N -0.736 5.736 14 C -0.249 4.249 15 H 0.069 0.931 16 C -0.066 4.066 17 N -0.962 5.962 18 Si 0.968 3.032 19 H -0.281 1.281 20 H -0.294 1.294 21 H -0.280 1.280 22 C -0.112 4.112 23 C 0.124 3.876 24 C 0.457 3.543 25 F -0.183 7.183 26 F -0.186 7.186 27 F -0.188 7.188 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.382 0.618 38 H 0.025 0.975 39 H 0.019 0.981 40 H 0.378 0.622 41 H 0.253 0.747 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.760 6.474 -16.002 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.133 4.133 3 H 0.139 0.861 4 C -0.183 4.183 5 C 0.311 3.689 6 O -0.450 6.450 7 N -0.336 5.336 8 C -0.007 4.007 9 C -0.190 4.190 10 C 0.096 3.904 11 O -0.369 6.369 12 C 0.000 4.000 13 N -0.381 5.381 14 C -0.381 4.381 15 H 0.087 0.913 16 C -0.259 4.259 17 N -0.612 5.612 18 Si 0.797 3.203 19 H -0.208 1.208 20 H -0.220 1.220 21 H -0.207 1.207 22 C -0.150 4.150 23 C 0.002 3.998 24 C 0.403 3.597 25 F -0.165 7.165 26 F -0.168 7.168 27 F -0.169 7.169 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.137 0.863 32 H 0.144 0.856 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.231 0.769 38 H 0.043 0.957 39 H 0.037 0.963 40 H 0.213 0.787 41 H 0.061 0.939 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.349 7.569 -16.039 22.813 hybrid contribution 1.679 -1.080 0.547 2.070 sum -12.670 6.489 -15.491 21.039 Atomic orbital electron populations 1.21953 0.90693 1.03812 1.04700 1.22126 1.00454 1.01510 0.89175 0.86143 1.21801 1.04916 1.01192 0.90362 1.20542 0.78622 0.85045 0.84650 1.90656 1.41868 1.25916 1.86516 1.48164 1.54767 1.24935 1.05745 1.21911 0.91856 0.85230 1.01733 1.22509 0.97938 1.02320 0.96273 1.21233 0.88057 0.90923 0.90156 1.86375 1.42136 1.29652 1.78743 1.21460 0.92429 0.89082 0.97026 1.42418 1.26951 1.06876 1.61838 1.19497 1.00445 0.94536 1.23611 0.91279 1.25430 1.02360 0.95473 1.02603 1.69743 1.41932 0.99389 1.50118 0.85307 0.79998 0.76227 0.78769 1.20765 1.22022 1.20656 1.21827 0.97435 0.94657 1.01105 1.21446 0.96238 0.97421 0.84741 1.20665 0.75179 0.77640 0.86253 1.93176 1.88413 1.38045 1.96825 1.93172 1.88500 1.80840 1.54252 1.93188 1.30489 1.96429 1.96813 0.90954 0.89803 0.90884 0.86292 0.85637 0.89922 0.87351 0.90938 0.90818 0.76919 0.95697 0.96284 0.78745 0.93856 0.90032 0.89571 0.89275 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.69 71.98 0.63 -1.66 16 2 C -0.11 -1.70 2.01 -10.80 -0.02 -1.72 16 3 H 0.12 1.89 7.96 -2.38 -0.02 1.88 16 4 C -0.14 -2.10 3.28 29.85 0.10 -2.00 16 5 C 0.52 10.73 7.42 87.66 0.65 11.38 16 6 O -0.57 -14.72 13.38 -3.03 -0.04 -14.76 16 7 N -0.60 -12.56 2.97 -817.99 -2.43 -14.99 16 8 C 0.11 2.24 6.13 86.51 0.53 2.77 16 9 C -0.15 -3.93 4.89 30.82 0.15 -3.78 16 10 C 0.14 3.93 0.71 -10.77 -0.01 3.92 16 11 O -0.56 -16.65 11.70 -148.98 -1.74 -18.39 16 12 C 0.13 4.73 5.43 86.38 0.47 5.20 16 13 N -0.74 -34.06 5.07 -343.45 -1.74 -35.80 16 14 C -0.25 -13.26 9.99 84.03 0.84 -12.42 16 15 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 16 C -0.07 -3.58 5.50 84.86 0.47 -3.12 16 17 N -0.96 -55.08 13.06 21.65 0.28 -54.79 16 18 Si 0.97 44.48 29.55 68.60 2.03 46.51 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 C -0.11 -2.69 5.11 30.68 0.16 -2.54 16 23 C 0.12 2.78 6.19 86.38 0.53 3.31 16 24 C 0.46 7.43 2.69 71.98 0.19 7.62 16 25 F -0.18 -3.07 16.37 44.97 0.74 -2.33 16 26 F -0.19 -3.31 16.80 44.97 0.76 -2.56 16 27 F -0.19 -3.40 16.71 44.97 0.75 -2.65 16 28 H 0.07 0.94 7.80 -2.38 -0.02 0.92 16 29 H 0.08 1.54 5.95 -2.39 -0.01 1.53 16 30 H 0.07 0.98 7.80 -2.39 -0.02 0.96 16 31 H 0.12 1.52 7.23 -2.39 -0.02 1.51 16 32 H 0.13 1.42 7.73 -2.39 -0.02 1.40 16 33 H 0.08 1.60 7.81 -2.39 -0.02 1.58 16 34 H 0.11 1.56 5.93 -2.39 -0.01 1.55 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 2.24 6.53 -2.39 -0.02 2.23 16 37 H 0.38 11.52 8.19 -74.06 -0.61 10.92 16 38 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.38 17.79 5.55 -92.71 -0.51 17.28 16 41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.09 2.04 7.01 -2.39 -0.02 2.02 16 45 H 0.07 1.72 7.81 -2.39 -0.02 1.70 16 Total: -1.00 -62.73 365.10 3.21 -59.52 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: -0.08 Total: 33.27 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 4.69 Total: 6.97 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -3.88 Total: -105.58 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -1.78 Total: -33.15 kcal Atomic # 9 Polarization: -9.78 SS G_CDS: 2.24 Total: -7.54 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -62.73 3.21 -59.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484959996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.521 kcal (2) G-P(sol) polarization free energy of solvation -62.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -260.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -257.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds