Wall clock time and date at job start Tue Mar 31 2020 21:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09002 * 109.47311 * 2 1 4 4 C 1.53004 * 109.47186 * 119.99922 * 2 1 3 5 5 N 1.46503 * 109.46937 * 188.17183 * 4 2 1 6 6 C 1.34773 * 119.99902 * 187.07118 * 5 4 2 7 7 O 1.21287 * 120.00045 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00141 * 180.02562 * 6 5 4 9 9 S 1.81000 * 109.47205 * 180.02562 * 8 6 5 10 10 C 1.76195 * 100.00001 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00306 * 0.02562 * 10 9 8 12 12 C 1.38803 * 120.00011 * 180.02562 * 10 9 8 13 13 N 1.31633 * 120.00063 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00102 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47404 * 89.99562 * 14 12 10 16 16 H 1.48500 * 109.47340 * 209.99576 * 14 12 10 17 17 H 1.48498 * 109.46997 * 329.99872 * 14 12 10 18 18 N 1.46900 * 109.47256 * 240.00144 * 2 1 3 19 19 C 1.46900 * 111.00385 * 177.51107 * 18 2 1 20 20 C 1.46898 * 111.00182 * 53.55607 * 18 2 1 21 21 H 1.09008 * 109.46770 * 317.08995 * 20 18 2 22 22 C 1.52999 * 109.47273 * 77.08308 * 20 18 2 23 23 C 1.50696 * 109.47549 * 197.09050 * 20 18 2 24 24 N 1.31796 * 119.12632 * 131.11662 * 23 20 18 25 25 C 1.32332 * 120.81804 * 180.02562 * 24 23 20 26 26 C 1.38602 * 119.10616 * 359.97438 * 25 24 23 27 27 C 1.38597 * 118.39865 * 0.02562 * 26 25 24 28 28 N 1.31797 * 119.11982 * 311.13995 * 23 20 18 29 29 H 1.09002 * 109.47311 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47226 * 299.99656 * 1 2 3 31 31 H 1.09001 * 109.47133 * 59.99846 * 1 2 3 32 32 H 1.08995 * 109.47353 * 308.17486 * 4 2 1 33 33 H 1.09000 * 109.46698 * 68.18098 * 4 2 1 34 34 H 0.97000 * 120.00046 * 7.07817 * 5 4 2 35 35 H 1.08998 * 109.47118 * 300.00033 * 8 6 5 36 36 H 1.08998 * 109.46889 * 60.00256 * 8 6 5 37 37 H 0.96997 * 120.00009 * 180.02562 * 13 12 10 38 38 H 1.09008 * 109.47013 * 309.54221 * 19 18 2 39 39 H 1.08991 * 109.47143 * 69.53831 * 19 18 2 40 40 H 1.09003 * 109.47207 * 189.54446 * 19 18 2 41 41 H 1.09001 * 109.46991 * 60.00357 * 22 20 18 42 42 H 1.09005 * 109.47240 * 180.02562 * 22 20 18 43 43 H 1.08997 * 109.47189 * 300.00713 * 22 20 18 44 44 H 1.07993 * 120.44872 * 179.72691 * 25 24 23 45 45 H 1.08000 * 120.80450 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.45137 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4917 -0.5535 1.3514 6 6 4.1825 -1.2221 2.2960 7 8 3.6023 -1.9631 3.0611 8 6 5.6758 -1.0492 2.4015 9 16 6.3074 -2.0712 3.7553 10 6 8.0238 -1.6858 3.6546 11 1 8.3790 -0.9950 2.9042 12 6 8.9193 -2.2699 4.5396 13 7 8.4863 -3.1115 5.4545 14 14 10.7390 -1.8619 4.4324 15 1 11.0351 -0.6895 5.2947 16 1 11.5357 -3.0279 4.8917 17 1 11.0929 -1.5436 3.0258 18 7 2.0196 -0.6925 -1.1994 19 6 3.4869 -0.6607 -1.2636 20 6 1.4270 -0.1210 -2.4161 21 1 0.3644 0.0590 -2.2526 22 6 2.1226 1.2002 -2.7501 23 6 1.6029 -1.0848 -3.5611 24 7 0.5633 -1.3824 -4.3146 25 6 0.6798 -2.2249 -5.3283 26 6 1.9150 -2.7954 -5.5924 27 6 2.9845 -2.4580 -4.7780 28 7 2.7922 -1.6081 -3.7820 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.5623 -0.2988 2.1332 33 1 1.8009 -1.7824 1.1791 34 1 3.9558 0.0388 0.7393 35 1 6.1441 -1.3559 1.4662 36 1 5.9074 -0.0023 2.5976 37 1 9.1121 -3.5194 6.0732 38 1 3.8346 0.3629 -1.1240 39 1 3.8986 -1.2945 -0.4783 40 1 3.8160 -1.0268 -2.2361 41 1 3.1851 1.0203 -2.9135 42 1 1.6825 1.6245 -3.6526 43 1 1.9953 1.8973 -1.9219 44 1 -0.1770 -2.4679 -5.9392 45 1 2.0410 -3.4868 -6.4125 46 1 3.9619 -2.8826 -4.9541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485276941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:44 Heat of formation + Delta-G solvation = 41.866161 kcal Electronic energy + Delta-G solvation = -26822.081840 eV Core-core repulsion = 23067.459041 eV Total energy + Delta-G solvation = -3754.622800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51487 -39.76401 -38.37009 -34.91928 -34.06775 -32.89092 -32.39786 -31.60544 -30.03368 -29.33256 -26.28936 -25.78009 -25.33346 -24.85889 -24.61713 -22.04245 -20.56531 -19.65213 -17.97161 -17.73840 -17.33123 -16.60351 -16.20824 -16.14180 -15.79133 -15.34363 -14.83891 -14.77979 -14.73794 -14.55464 -13.97552 -13.91681 -13.79908 -13.26815 -13.03452 -12.84996 -12.68443 -12.53199 -12.40287 -12.05762 -11.93831 -11.85205 -11.66888 -11.49092 -11.15767 -11.04160 -10.99468 -10.89444 -10.73954 -10.70569 -9.92940 -9.78321 -9.44994 -9.31163 -9.03981 -8.69941 -8.49065 -8.19190 -6.46054 -6.18725 -3.88713 0.53859 0.74972 3.09635 3.17932 3.20511 3.24155 3.30085 3.35258 3.47363 3.70720 3.79085 3.99152 4.23298 4.24499 4.50802 4.59463 4.71408 4.75789 4.81888 4.84334 5.00521 5.04026 5.16250 5.19194 5.21814 5.31577 5.38160 5.42119 5.51517 5.57565 5.63879 5.70142 5.75881 5.77816 5.90512 5.94652 5.97043 6.07333 6.18242 6.34163 6.64252 6.68977 6.81751 6.91126 7.62377 7.76213 7.77075 8.38158 8.69436 9.26491 10.88700 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.002350 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.167652 B =11910.670769 C =12964.150823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.070 3.930 3 H 0.050 0.950 4 C 0.130 3.870 5 N -0.740 5.740 6 C 0.529 3.471 7 O -0.518 6.518 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.534 4.534 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.520 5.520 19 C -0.015 4.015 20 C 0.138 3.862 21 H 0.115 0.885 22 C -0.179 4.179 23 C 0.340 3.660 24 N -0.517 5.517 25 C 0.149 3.851 26 C -0.235 4.235 27 C 0.150 3.850 28 N -0.502 5.502 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.268 0.732 38 H 0.023 0.977 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.167 0.833 45 H 0.147 0.853 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.521 7.300 -24.230 30.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.038 4.038 3 H 0.068 0.932 4 C 0.006 3.994 5 N -0.398 5.398 6 C 0.315 3.685 7 O -0.392 6.392 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 N -0.245 5.245 19 C -0.162 4.162 20 C 0.028 3.972 21 H 0.132 0.868 22 C -0.239 4.239 23 C 0.072 3.928 24 N -0.231 5.231 25 C -0.017 4.017 26 C -0.257 4.257 27 C -0.016 4.016 28 N -0.215 5.215 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.235 0.765 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.103 0.897 40 H 0.127 0.873 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.185 0.815 45 H 0.164 0.836 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -17.717 6.070 -22.000 28.892 hybrid contribution 2.470 1.497 -2.152 3.602 sum -15.247 7.567 -24.152 29.547 Atomic orbital electron populations 1.21920 0.93294 1.03375 1.02177 1.21935 0.96235 0.95812 0.89842 0.93192 1.21322 0.80629 1.01839 0.95640 1.46497 1.08071 1.48848 1.36354 1.20291 0.89166 0.79399 0.79604 1.90701 1.70783 1.36580 1.41126 1.23532 0.93882 1.06048 1.06921 1.85400 1.05117 1.56383 1.36409 1.22870 0.92358 1.31949 1.21097 0.90970 1.24993 0.99499 0.94576 0.94564 1.70022 1.35312 1.27520 1.17457 0.86173 0.82799 0.78061 0.78489 1.20305 1.20774 1.19709 1.62067 1.08463 1.54006 0.99953 1.23331 0.86321 0.99811 1.06770 1.20525 1.01396 0.89143 0.86150 0.86767 1.22422 1.02266 0.96787 1.02396 1.22958 0.83993 0.92506 0.93352 1.68188 1.33503 1.15295 1.06111 1.23216 0.97097 0.89342 0.92005 1.22910 0.95612 1.03852 1.03359 1.23360 0.99575 0.90556 0.88135 1.68161 1.25109 1.10250 1.18013 0.91171 0.91457 0.91847 0.91272 0.90253 0.76492 0.89307 0.89390 0.92219 0.95839 0.89733 0.87258 0.90993 0.92045 0.91356 0.81539 0.83557 0.81411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.81 37.15 0.33 -0.85 16 2 C 0.07 0.66 2.15 -67.72 -0.15 0.52 16 3 H 0.05 0.43 7.13 -51.93 -0.37 0.06 16 4 C 0.13 1.62 5.13 -4.04 -0.02 1.60 16 5 N -0.74 -10.39 3.56 -60.29 -0.21 -10.60 16 6 C 0.53 10.18 7.85 -10.99 -0.09 10.10 16 7 O -0.52 -12.11 15.84 5.55 0.09 -12.02 16 8 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 11 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 14 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 18 N -0.52 -5.39 4.52 -228.30 -1.03 -6.42 16 19 C -0.01 -0.16 6.56 60.06 0.39 0.24 16 20 C 0.14 1.27 2.56 -68.87 -0.18 1.10 16 21 H 0.11 1.00 5.30 -51.92 -0.28 0.72 16 22 C -0.18 -1.41 8.33 37.16 0.31 -1.10 16 23 C 0.34 3.52 6.56 -157.19 -1.03 2.48 16 24 N -0.52 -5.08 10.31 -10.73 -0.11 -5.19 16 25 C 0.15 1.05 11.31 -17.20 -0.19 0.86 16 26 C -0.24 -1.41 10.17 -39.31 -0.40 -1.81 16 27 C 0.15 1.14 11.31 -17.20 -0.19 0.95 16 28 N -0.50 -5.10 7.27 -10.72 -0.08 -5.18 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.43 5.97 -51.93 -0.31 0.12 16 32 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 33 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 34 H 0.40 4.65 5.84 -40.82 -0.24 4.41 16 35 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 36 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 37 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.02 0.22 6.28 -51.92 -0.33 -0.11 16 39 H 0.08 1.08 5.79 -51.93 -0.30 0.78 16 40 H 0.11 1.23 4.95 -51.93 -0.26 0.98 16 41 H 0.07 0.62 6.56 -51.93 -0.34 0.28 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.48 7.13 -51.93 -0.37 0.11 16 44 H 0.17 0.63 8.06 -52.49 -0.42 0.20 16 45 H 0.15 0.43 8.06 -52.49 -0.42 0.00 16 46 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -36.32 380.22 -9.47 -45.80 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.56 Total: 2.81 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -0.80 Total: -1.94 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.70 Total: -53.08 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.32 -9.47 -45.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485276941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.664 kcal (2) G-P(sol) polarization free energy of solvation -36.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds