Wall clock time and date at job start Tue Mar 31 2020 21:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47549 * 2 1 4 4 C 1.53002 * 109.47070 * 120.00542 * 2 1 3 5 5 N 1.46505 * 109.47052 * 174.99680 * 4 2 1 6 6 C 1.34775 * 120.00081 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99755 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.53843 * 59.82941 * 8 6 5 10 10 F 1.39894 * 109.47249 * 60.00095 * 9 8 6 11 11 F 1.39899 * 109.46758 * 179.97438 * 9 8 6 12 12 F 1.39893 * 109.47296 * 299.99168 * 9 8 6 13 13 C 1.53171 * 109.54680 * 299.55823 * 8 6 5 14 14 C 1.53090 * 109.16515 * 297.11560 * 13 8 6 15 15 O 1.42904 * 109.41565 * 302.39326 * 14 13 8 16 16 C 1.42899 * 114.09710 * 61.15385 * 15 14 13 17 17 C 1.53091 * 109.41814 * 298.84239 * 16 15 14 18 18 N 1.46500 * 109.46635 * 240.00340 * 2 1 3 19 19 C 1.46506 * 119.99908 * 299.99932 * 18 2 1 20 20 C 1.36938 * 120.00290 * 120.00350 * 18 2 1 21 21 H 1.08001 * 119.99389 * 23.09474 * 20 18 2 22 22 C 1.38810 * 120.00140 * 203.09690 * 20 18 2 23 23 N 1.31612 * 119.99985 * 12.99276 * 22 20 18 24 24 Si 1.86801 * 119.99829 * 192.99283 * 22 20 18 25 25 H 1.48505 * 109.47075 * 90.00177 * 24 22 20 26 26 H 1.48499 * 109.47149 * 209.99901 * 24 22 20 27 27 H 1.48498 * 109.47239 * 330.00272 * 24 22 20 28 28 H 1.09010 * 109.46458 * 299.99625 * 1 2 3 29 29 H 1.08996 * 109.47549 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47156 * 59.99355 * 1 2 3 31 31 H 1.08999 * 109.46916 * 294.99520 * 4 2 1 32 32 H 1.08996 * 109.47223 * 54.99979 * 4 2 1 33 33 H 0.97004 * 119.99576 * 359.97438 * 5 4 2 34 34 H 1.09004 * 109.52181 * 57.01818 * 13 8 6 35 35 H 1.08998 * 109.52638 * 177.20870 * 13 8 6 36 36 H 1.09000 * 109.47969 * 182.40880 * 14 13 8 37 37 H 1.08997 * 109.49184 * 62.37820 * 14 13 8 38 38 H 1.09005 * 109.47852 * 178.85890 * 16 15 14 39 39 H 1.09001 * 109.49032 * 58.83667 * 16 15 14 40 40 H 1.09004 * 109.52381 * 297.70607 * 17 16 15 41 41 H 1.08997 * 109.52367 * 177.51152 * 17 16 15 42 42 H 1.08997 * 109.46782 * 95.13059 * 19 18 2 43 43 H 1.09006 * 109.46680 * 215.12990 * 19 18 2 44 44 H 1.08999 * 109.47101 * 335.12341 * 19 18 2 45 45 H 0.96999 * 119.99825 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5001 -0.8266 1.1905 6 6 4.1731 -1.4286 2.1910 7 8 3.5700 -1.8836 3.1397 8 6 5.6750 -1.5372 2.1302 9 6 6.2870 -0.1367 2.0604 10 9 5.9185 0.5904 3.1973 11 9 7.6811 -0.2393 2.0047 12 9 5.8212 0.5193 0.9160 13 6 6.0811 -2.3384 0.8895 14 6 5.5284 -3.7612 1.0069 15 8 6.0190 -4.3640 2.2061 16 6 5.6306 -3.6845 3.4017 17 6 6.1875 -2.2586 3.3806 18 7 2.0182 -0.6906 -1.1962 19 6 1.6642 -2.0932 -1.4281 20 6 2.8055 -0.0251 -2.0977 21 1 3.3700 0.8410 -1.7854 22 6 2.8780 -0.4638 -3.4126 23 7 2.0107 -1.3466 -3.8606 24 14 4.2064 0.1989 -4.5464 25 1 5.4119 -0.6635 -4.4536 26 1 3.7070 0.2027 -5.9449 27 1 4.5566 1.5842 -4.1420 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 1.7517 -0.1585 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9824 -0.4629 0.4314 34 1 5.6730 -1.8615 -0.0017 35 1 7.1682 -2.3746 0.8189 36 1 5.8504 -4.3483 0.1468 37 1 4.4393 -3.7270 1.0365 38 1 6.0263 -4.2165 4.2670 39 1 4.5429 -3.6491 3.4630 40 1 7.2768 -2.2932 3.3604 41 1 5.8555 -1.7247 4.2709 42 1 0.7889 -2.1446 -2.0755 43 1 2.5000 -2.6046 -1.9057 44 1 1.4406 -2.5737 -0.4757 45 1 2.0611 -1.6528 -4.7796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485304619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:32 Heat of formation + Delta-G solvation = -214.483966 kcal Electronic energy + Delta-G solvation = -33251.064578 eV Core-core repulsion = 28468.423240 eV Total energy + Delta-G solvation = -4782.641338 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.28829 -47.74870 -47.72559 -40.76606 -38.32855 -36.80759 -34.52839 -33.97138 -32.12738 -31.16670 -29.41804 -27.78095 -26.09914 -25.98176 -23.89507 -23.61050 -23.08873 -21.97293 -19.91766 -19.18090 -18.50106 -18.44136 -18.16932 -17.02740 -16.66913 -16.02280 -15.96173 -15.46923 -15.20163 -14.88330 -14.75525 -14.55609 -14.47427 -14.13888 -14.02543 -13.93565 -13.84318 -13.80175 -13.64644 -12.91130 -12.87759 -12.54213 -12.44926 -12.43998 -12.16805 -11.98961 -11.51460 -11.49116 -11.15211 -11.04419 -10.91048 -10.83741 -10.63992 -10.48557 -10.35041 -9.97999 -9.94170 -9.85246 -9.47104 -8.75547 -8.64909 -6.87884 -5.82181 -3.30440 2.18002 2.79702 3.09701 3.30446 3.38475 3.39186 3.57096 3.70034 3.82449 3.98030 4.39129 4.43139 4.45285 4.74000 4.78059 5.10739 5.18299 5.28520 5.31754 5.33584 5.44294 5.49594 5.52721 5.63275 5.79643 5.81541 5.84546 5.94030 6.00274 6.11508 6.19684 6.36376 6.63613 6.71359 6.76483 6.92356 7.10136 7.27667 7.65407 7.70131 7.72032 8.25767 8.30397 9.13047 9.75443 10.24925 11.21778 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.004985 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.736860 B = 5615.947359 C = 6062.488693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.069 0.931 4 C 0.104 3.896 5 N -0.694 5.694 6 C 0.518 3.482 7 O -0.531 6.531 8 C -0.127 4.127 9 C 0.464 3.536 10 F -0.176 7.176 11 F -0.175 7.175 12 F -0.169 7.169 13 C -0.151 4.151 14 C 0.067 3.933 15 O -0.381 6.381 16 C 0.055 3.945 17 C -0.132 4.132 18 N -0.593 5.593 19 C 0.164 3.836 20 C -0.264 4.264 21 H 0.069 0.931 22 C 0.008 3.992 23 N -0.901 5.901 24 Si 0.900 3.100 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.279 1.279 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.414 0.586 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.031 0.969 43 H 0.039 0.961 44 H -0.002 1.002 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 -1.346 12.503 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.087 0.913 4 C -0.021 4.021 5 N -0.346 5.346 6 C 0.301 3.699 7 O -0.409 6.409 8 C -0.132 4.132 9 C 0.409 3.591 10 F -0.157 7.157 11 F -0.156 7.156 12 F -0.151 7.151 13 C -0.189 4.189 14 C -0.010 4.010 15 O -0.300 6.300 16 C -0.021 4.021 17 C -0.170 4.170 18 N -0.316 5.316 19 C 0.020 3.980 20 C -0.393 4.393 21 H 0.087 0.913 22 C -0.191 4.191 23 N -0.545 5.545 24 Si 0.730 3.270 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.204 1.204 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.254 0.746 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.016 0.984 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.888 -1.861 12.951 14.786 hybrid contribution 0.840 1.155 -1.245 1.895 sum 7.728 -0.705 11.706 14.044 Atomic orbital electron populations 1.22177 0.97245 1.01408 1.00689 1.20629 0.92722 0.95598 0.86303 0.91260 1.22075 0.78651 1.01642 0.99742 1.46102 1.09002 1.56799 1.22663 1.19569 0.87355 0.79563 0.83460 1.90640 1.68982 1.47967 1.33308 1.22290 0.95882 0.92255 1.02745 1.20140 0.76671 0.88246 0.74048 1.93204 1.91291 1.79950 1.51299 1.93180 1.30050 1.96306 1.96102 1.93207 1.88083 1.83143 1.50636 1.22397 1.03899 0.97338 0.95257 1.22522 0.98583 0.91717 0.88206 1.87917 1.75797 1.52281 1.13965 1.22788 1.01484 0.90179 0.87668 1.22111 1.01743 0.98035 0.95076 1.43991 1.58187 1.08001 1.21427 1.20734 0.99862 0.83325 0.94112 1.19197 1.18954 1.11850 0.89309 0.91347 1.25012 0.98172 0.99369 0.96535 1.70062 1.34870 1.34076 1.15523 0.86337 0.81569 0.78743 0.80399 1.21393 1.21739 1.20418 0.93958 0.93128 0.92080 0.92081 0.91671 0.74638 0.88140 0.88636 0.87471 0.92338 0.88392 0.90040 0.89403 0.88938 0.95104 0.94200 0.98357 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.19 37.16 0.34 -2.29 16 2 C 0.16 2.89 2.87 -67.93 -0.19 2.69 16 3 H 0.07 1.29 7.86 -51.93 -0.41 0.89 16 4 C 0.10 1.75 4.93 -4.04 -0.02 1.73 16 5 N -0.69 -11.48 4.96 -60.29 -0.30 -11.78 16 6 C 0.52 8.16 4.89 -10.98 -0.05 8.10 16 7 O -0.53 -9.25 13.84 5.56 0.08 -9.17 16 8 C -0.13 -1.70 0.25 -155.48 -0.04 -1.74 16 9 C 0.46 6.30 2.22 37.16 0.08 6.38 16 10 F -0.18 -2.47 16.58 2.25 0.04 -2.44 16 11 F -0.18 -2.22 16.18 2.25 0.04 -2.19 16 12 F -0.17 -2.52 14.65 2.25 0.03 -2.49 16 13 C -0.15 -1.92 4.61 -26.60 -0.12 -2.05 16 14 C 0.07 0.87 6.62 37.20 0.25 1.11 16 15 O -0.38 -5.09 10.77 -35.23 -0.38 -5.47 16 16 C 0.06 0.67 6.55 37.20 0.24 0.92 16 17 C -0.13 -1.55 4.31 -26.59 -0.11 -1.67 16 18 N -0.59 -13.15 2.28 -173.48 -0.40 -13.55 16 19 C 0.16 3.71 8.01 59.85 0.48 4.19 16 20 C -0.26 -6.52 9.31 -15.06 -0.14 -6.66 16 21 H 0.07 1.66 7.82 -52.49 -0.41 1.25 16 22 C 0.01 0.22 5.10 -17.43 -0.09 0.13 16 23 N -0.90 -24.70 10.72 55.49 0.59 -24.11 16 24 Si 0.90 20.62 29.57 -169.99 -5.03 15.59 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 29 H 0.05 0.86 7.67 -51.93 -0.40 0.46 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.14 6.86 -51.93 -0.36 0.79 16 33 H 0.41 7.19 5.47 -40.82 -0.22 6.97 16 34 H 0.10 1.38 7.29 -51.93 -0.38 1.00 16 35 H 0.10 1.08 7.73 -51.93 -0.40 0.68 16 36 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 0.85 7.38 -51.93 -0.38 0.47 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 1.15 5.80 -51.93 -0.30 0.85 16 40 H 0.09 0.91 7.73 -51.93 -0.40 0.51 16 41 H 0.09 1.08 7.79 -51.93 -0.40 0.67 16 42 H 0.03 0.77 7.34 -51.93 -0.38 0.39 16 43 H 0.04 0.97 7.35 -51.93 -0.38 0.59 16 44 H 0.00 -0.04 6.53 -51.93 -0.34 -0.38 16 45 H 0.25 6.81 8.31 -40.82 -0.34 6.48 16 LS Contribution 359.39 15.07 5.42 5.42 Total: -1.00 -27.73 359.39 -5.71 -33.43 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.42 Total: 5.90 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 0.62 Total: 10.85 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.10 Total: -49.44 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.30 Total: -14.64 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 0.11 Total: -7.11 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.73 -5.71 -33.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485304619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.050 kcal (2) G-P(sol) polarization free energy of solvation -27.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds