Wall clock time and date at job start Tue Mar 31 2020 21:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47549 * 2 1 4 4 C 1.53002 * 109.47070 * 120.00542 * 2 1 3 5 5 N 1.46505 * 109.47052 * 174.99680 * 4 2 1 6 6 C 1.34775 * 120.00081 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99755 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.53843 * 59.82941 * 8 6 5 10 10 F 1.39894 * 109.47249 * 60.00095 * 9 8 6 11 11 F 1.39899 * 109.46758 * 179.97438 * 9 8 6 12 12 F 1.39893 * 109.47296 * 299.99168 * 9 8 6 13 13 C 1.53171 * 109.54680 * 299.55823 * 8 6 5 14 14 C 1.53090 * 109.16515 * 297.11560 * 13 8 6 15 15 O 1.42904 * 109.41565 * 302.39326 * 14 13 8 16 16 C 1.42899 * 114.09710 * 61.15385 * 15 14 13 17 17 C 1.53091 * 109.41814 * 298.84239 * 16 15 14 18 18 N 1.46500 * 109.46635 * 240.00340 * 2 1 3 19 19 C 1.46506 * 119.99908 * 299.99932 * 18 2 1 20 20 C 1.36938 * 120.00290 * 120.00350 * 18 2 1 21 21 H 1.08001 * 119.99389 * 23.09474 * 20 18 2 22 22 C 1.38810 * 120.00140 * 203.09690 * 20 18 2 23 23 N 1.31612 * 119.99985 * 12.99276 * 22 20 18 24 24 Si 1.86801 * 119.99829 * 192.99283 * 22 20 18 25 25 H 1.48505 * 109.47075 * 90.00177 * 24 22 20 26 26 H 1.48499 * 109.47149 * 209.99901 * 24 22 20 27 27 H 1.48498 * 109.47239 * 330.00272 * 24 22 20 28 28 H 1.09010 * 109.46458 * 299.99625 * 1 2 3 29 29 H 1.08996 * 109.47549 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47156 * 59.99355 * 1 2 3 31 31 H 1.08999 * 109.46916 * 294.99520 * 4 2 1 32 32 H 1.08996 * 109.47223 * 54.99979 * 4 2 1 33 33 H 0.97004 * 119.99576 * 359.97438 * 5 4 2 34 34 H 1.09004 * 109.52181 * 57.01818 * 13 8 6 35 35 H 1.08998 * 109.52638 * 177.20870 * 13 8 6 36 36 H 1.09000 * 109.47969 * 182.40880 * 14 13 8 37 37 H 1.08997 * 109.49184 * 62.37820 * 14 13 8 38 38 H 1.09005 * 109.47852 * 178.85890 * 16 15 14 39 39 H 1.09001 * 109.49032 * 58.83667 * 16 15 14 40 40 H 1.09004 * 109.52381 * 297.70607 * 17 16 15 41 41 H 1.08997 * 109.52367 * 177.51152 * 17 16 15 42 42 H 1.08997 * 109.46782 * 95.13059 * 19 18 2 43 43 H 1.09006 * 109.46680 * 215.12990 * 19 18 2 44 44 H 1.08999 * 109.47101 * 335.12341 * 19 18 2 45 45 H 0.96999 * 119.99825 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5001 -0.8266 1.1905 6 6 4.1731 -1.4286 2.1910 7 8 3.5700 -1.8836 3.1397 8 6 5.6750 -1.5372 2.1302 9 6 6.2870 -0.1367 2.0604 10 9 5.9185 0.5904 3.1973 11 9 7.6811 -0.2393 2.0047 12 9 5.8212 0.5193 0.9160 13 6 6.0811 -2.3384 0.8895 14 6 5.5284 -3.7612 1.0069 15 8 6.0190 -4.3640 2.2061 16 6 5.6306 -3.6845 3.4017 17 6 6.1875 -2.2586 3.3806 18 7 2.0182 -0.6906 -1.1962 19 6 1.6642 -2.0932 -1.4281 20 6 2.8055 -0.0251 -2.0977 21 1 3.3700 0.8410 -1.7854 22 6 2.8780 -0.4638 -3.4126 23 7 2.0107 -1.3466 -3.8606 24 14 4.2064 0.1989 -4.5464 25 1 5.4119 -0.6635 -4.4536 26 1 3.7070 0.2027 -5.9449 27 1 4.5566 1.5842 -4.1420 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 1.7517 -0.1585 2.1369 32 1 1.6054 -1.7199 1.2950 33 1 3.9824 -0.4629 0.4314 34 1 5.6730 -1.8615 -0.0017 35 1 7.1682 -2.3746 0.8189 36 1 5.8504 -4.3483 0.1468 37 1 4.4393 -3.7270 1.0365 38 1 6.0263 -4.2165 4.2670 39 1 4.5429 -3.6491 3.4630 40 1 7.2768 -2.2932 3.3604 41 1 5.8555 -1.7247 4.2709 42 1 0.7889 -2.1446 -2.0755 43 1 2.5000 -2.6046 -1.9057 44 1 1.4406 -2.5737 -0.4757 45 1 2.0611 -1.6528 -4.7796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485304619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:31 Heat of formation + Delta-G solvation = -230.837564 kcal Electronic energy + Delta-G solvation = -33251.773723 eV Core-core repulsion = 28468.423240 eV Total energy + Delta-G solvation = -4783.350483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.37616 -48.85212 -48.79971 -41.92528 -39.52647 -38.35653 -35.70356 -35.43639 -33.75230 -32.20944 -31.14579 -28.85742 -28.00307 -27.29173 -25.05888 -24.89144 -24.52586 -23.13842 -21.28661 -20.56301 -19.59703 -19.53184 -19.29861 -18.84973 -17.82124 -17.26251 -17.14254 -17.03565 -16.37824 -16.20245 -15.87639 -15.80500 -15.67209 -15.51374 -15.22392 -15.10221 -14.95926 -14.93316 -14.75608 -14.61977 -14.47098 -13.95857 -13.64498 -13.50665 -13.46929 -13.18531 -13.05520 -12.86770 -12.67467 -12.54155 -12.47461 -12.28045 -12.09855 -12.04351 -11.79973 -11.71233 -11.52015 -11.09244 -10.61678 -10.58293 -10.07748 -8.76776 -7.78660 -5.27054 1.01334 1.48409 1.51310 1.57704 1.64178 1.89328 2.48789 2.52410 2.64480 2.82668 2.87930 3.36012 3.38803 3.39520 3.54274 3.65692 3.78330 4.01027 4.10354 4.19460 4.33218 4.35834 4.44253 4.57258 4.59212 4.68120 4.68860 4.74223 4.79356 4.88494 4.90394 4.98925 5.03830 5.22600 5.30672 5.40579 5.50146 5.69844 5.77144 6.09924 6.35848 6.39247 6.97541 7.19110 7.89408 8.34531 9.24051 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.004985 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.736860 B = 5615.947359 C = 6062.488693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.155 3.845 3 H 0.070 0.930 4 C 0.114 3.886 5 N -0.700 5.700 6 C 0.518 3.482 7 O -0.547 6.547 8 C -0.124 4.124 9 C 0.466 3.534 10 F -0.178 7.178 11 F -0.167 7.167 12 F -0.178 7.178 13 C -0.148 4.148 14 C 0.068 3.932 15 O -0.386 6.386 16 C 0.054 3.946 17 C -0.129 4.129 18 N -0.601 5.601 19 C 0.185 3.815 20 C -0.256 4.256 21 H 0.074 0.926 22 C -0.044 4.044 23 N -0.934 5.934 24 Si 0.954 3.046 25 H -0.284 1.284 26 H -0.302 1.302 27 H -0.270 1.270 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.411 0.589 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.037 0.963 38 H 0.124 0.876 39 H 0.060 0.940 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.002 0.998 43 H 0.015 0.985 44 H 0.020 0.980 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.564 -0.880 13.987 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.047 3.953 3 H 0.088 0.912 4 C -0.011 4.011 5 N -0.351 5.351 6 C 0.302 3.698 7 O -0.426 6.426 8 C -0.128 4.128 9 C 0.412 3.588 10 F -0.160 7.160 11 F -0.148 7.148 12 F -0.160 7.160 13 C -0.185 4.185 14 C -0.009 4.009 15 O -0.305 6.305 16 C -0.022 4.022 17 C -0.167 4.167 18 N -0.324 5.324 19 C 0.040 3.960 20 C -0.386 4.386 21 H 0.092 0.908 22 C -0.240 4.240 23 N -0.581 5.581 24 Si 0.784 3.216 25 H -0.211 1.211 26 H -0.230 1.230 27 H -0.195 1.195 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.076 0.924 33 H 0.249 0.751 34 H 0.107 0.893 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.055 0.945 38 H 0.142 0.858 39 H 0.078 0.922 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.020 0.980 43 H 0.034 0.966 44 H 0.039 0.961 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.222 -1.373 14.477 16.705 hybrid contribution 0.406 1.030 -1.604 1.949 sum 8.627 -0.343 12.873 15.500 Atomic orbital electron populations 1.22059 0.95835 1.01406 1.01377 1.20786 0.93751 0.95422 0.85320 0.91205 1.21902 0.78960 1.01088 0.99185 1.46147 1.08895 1.57172 1.22871 1.19908 0.88404 0.78718 0.82778 1.90636 1.69712 1.48438 1.33835 1.22303 0.94040 0.92506 1.03997 1.20118 0.76993 0.88055 0.73675 1.93201 1.91368 1.80036 1.51372 1.93196 1.29324 1.96250 1.96042 1.93191 1.88256 1.83348 1.51170 1.22393 1.04965 0.96779 0.94407 1.22517 0.97346 0.92257 0.88813 1.87916 1.75650 1.52662 1.14249 1.22860 1.00364 0.90837 0.88119 1.22169 1.02857 0.97421 0.94208 1.44101 1.58275 1.07978 1.22041 1.20389 0.97533 0.83837 0.94279 1.19484 1.18378 1.11234 0.89469 0.90816 1.25634 1.00047 1.00265 0.98008 1.70217 1.36647 1.35892 1.15298 0.85456 0.79477 0.78564 0.78114 1.21111 1.22965 1.19488 0.90551 0.93493 0.94038 0.90432 0.92447 0.75069 0.89322 0.86717 0.86133 0.94464 0.85789 0.92226 0.87393 0.88675 0.98013 0.96587 0.96110 0.94506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.79 9.19 71.98 0.66 -4.13 16 2 C 0.15 5.53 2.87 44.99 0.13 5.65 16 3 H 0.07 2.50 7.86 -2.39 -0.02 2.48 16 4 C 0.11 3.65 4.93 86.38 0.43 4.08 16 5 N -0.70 -22.41 4.96 -463.05 -2.30 -24.71 16 6 C 0.52 15.71 4.89 87.66 0.43 16.13 16 7 O -0.55 -18.44 13.84 -3.04 -0.04 -18.48 16 8 C -0.12 -3.10 0.25 -52.81 -0.01 -3.11 16 9 C 0.47 11.77 2.22 71.98 0.16 11.93 16 10 F -0.18 -4.67 16.58 44.97 0.75 -3.92 16 11 F -0.17 -3.82 16.18 44.97 0.73 -3.09 16 12 F -0.18 -5.05 14.65 44.97 0.66 -4.39 16 13 C -0.15 -3.53 4.61 30.68 0.14 -3.39 16 14 C 0.07 1.68 6.62 72.01 0.48 2.16 16 15 O -0.39 -9.63 10.77 -148.98 -1.60 -11.23 16 16 C 0.05 1.22 6.55 72.01 0.47 1.69 16 17 C -0.13 -2.73 4.31 30.69 0.13 -2.60 16 18 N -0.60 -26.54 2.28 -702.76 -1.61 -28.15 16 19 C 0.18 8.46 8.01 127.77 1.02 9.48 16 20 C -0.26 -12.56 9.31 84.03 0.78 -11.78 16 21 H 0.07 3.51 7.82 -2.91 -0.02 3.48 16 22 C -0.04 -2.28 5.10 84.86 0.43 -1.85 16 23 N -0.93 -52.33 10.72 21.65 0.23 -52.10 16 24 Si 0.95 42.51 29.57 68.60 2.03 44.54 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 28 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.05 1.55 7.67 -2.39 -0.02 1.53 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.06 1.94 6.86 -2.39 -0.02 1.93 16 33 H 0.41 13.90 5.47 -92.71 -0.51 13.40 16 34 H 0.09 2.35 7.29 -2.38 -0.02 2.33 16 35 H 0.11 2.30 7.73 -2.39 -0.02 2.29 16 36 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.04 1.08 7.38 -2.39 -0.02 1.06 16 38 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.06 1.62 5.80 -2.39 -0.01 1.61 16 40 H 0.11 1.88 7.73 -2.39 -0.02 1.86 16 41 H 0.09 1.99 7.79 -2.39 -0.02 1.97 16 42 H 0.00 0.08 7.34 -2.39 -0.02 0.06 16 43 H 0.02 0.78 7.35 -2.38 -0.02 0.76 16 44 H 0.02 0.83 6.53 -2.39 -0.02 0.82 16 45 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 Total: -1.00 -58.84 359.39 4.61 -54.23 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.51 Total: 23.02 kcal Atomic # 6 Polarization: 19.03 SS G_CDS: 5.25 Total: 24.28 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -3.67 Total: -104.96 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -1.65 Total: -29.71 kcal Atomic # 9 Polarization: -13.53 SS G_CDS: 2.13 Total: -11.40 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -58.84 4.61 -54.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485304619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.611 kcal (2) G-P(sol) polarization free energy of solvation -58.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds