Wall clock time and date at job start Tue Mar 31 2020 21:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47150 * 2 1 4 4 C 1.52999 * 109.47333 * 240.00103 * 2 1 3 5 5 N 1.46503 * 109.46844 * 185.00071 * 4 2 1 6 6 C 1.34784 * 119.99309 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00054 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99437 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.54677 * 300.17450 * 8 6 5 10 10 F 1.39900 * 109.47014 * 299.82735 * 9 8 6 11 11 F 1.39899 * 109.47215 * 59.82272 * 9 8 6 12 12 F 1.39899 * 109.47671 * 179.82448 * 9 8 6 13 13 C 1.53201 * 109.54276 * 60.43873 * 8 6 5 14 14 C 1.53092 * 109.15262 * 62.89244 * 13 8 6 15 15 O 1.42904 * 109.42566 * 57.60549 * 14 13 8 16 16 C 1.42912 * 114.09365 * 298.83891 * 15 14 13 17 17 C 1.53092 * 109.41490 * 61.15810 * 16 15 14 18 18 N 1.46506 * 109.46939 * 119.99924 * 2 1 3 19 19 C 1.46494 * 120.00166 * 60.00613 * 18 2 1 20 20 C 1.36939 * 119.99821 * 239.99640 * 18 2 1 21 21 H 1.08009 * 119.99808 * 20.32918 * 20 18 2 22 22 C 1.38807 * 120.00126 * 200.32014 * 20 18 2 23 23 N 1.31620 * 119.99772 * 14.99958 * 22 20 18 24 24 Si 1.86800 * 120.00266 * 194.99853 * 22 20 18 25 25 H 1.48502 * 109.46812 * 85.00261 * 24 22 20 26 26 H 1.48498 * 109.47419 * 205.00138 * 24 22 20 27 27 H 1.48500 * 109.47365 * 325.00476 * 24 22 20 28 28 H 1.09005 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47037 * 299.99634 * 1 2 3 30 30 H 1.08996 * 109.47374 * 60.00068 * 1 2 3 31 31 H 1.08993 * 109.46719 * 64.99739 * 4 2 1 32 32 H 1.08997 * 109.46924 * 304.99809 * 4 2 1 33 33 H 0.96992 * 120.00219 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.53797 * 302.98759 * 13 8 6 35 35 H 1.09003 * 109.51992 * 182.79194 * 13 8 6 36 36 H 1.09001 * 109.47902 * 297.61924 * 14 13 8 37 37 H 1.08997 * 109.48243 * 177.59549 * 14 13 8 38 38 H 1.09001 * 109.47699 * 181.13924 * 16 15 14 39 39 H 1.08999 * 109.47641 * 301.15992 * 16 15 14 40 40 H 1.09000 * 109.52497 * 62.29400 * 17 16 15 41 41 H 1.09003 * 109.52090 * 182.42118 * 17 16 15 42 42 H 1.08993 * 109.47436 * 95.11302 * 19 18 2 43 43 H 1.09003 * 109.46919 * 215.11735 * 19 18 2 44 44 H 1.09004 * 109.46832 * 335.10805 * 19 18 2 45 45 H 0.97002 * 119.99792 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1904 6 6 4.1731 -1.4282 -2.1911 7 8 3.5700 -1.8832 -3.1399 8 6 5.6751 -1.5358 -2.1310 9 6 6.2862 -0.1349 -2.0618 10 9 5.9200 0.5903 -3.2007 11 9 5.8172 0.5226 -0.9195 12 9 7.6803 -0.2367 -2.0020 13 6 6.0822 -2.3363 -0.8898 14 6 5.5304 -3.7596 -1.0068 15 8 6.0210 -4.3624 -2.2060 16 6 5.6316 -3.6835 -3.4018 17 6 6.1876 -2.2573 -3.3812 18 7 2.0183 -0.6906 1.1962 19 6 1.6645 -2.0932 1.4280 20 6 2.8056 -0.0251 2.0976 21 1 2.8043 1.0547 2.1219 22 6 3.6052 -0.7382 2.9802 23 7 3.8399 -2.0161 2.7700 24 14 4.3481 0.1158 4.4662 25 1 3.3654 0.1158 5.5796 26 1 5.5754 -0.6052 4.8893 27 1 4.6939 1.5156 4.1112 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.7516 -0.1583 -2.1368 32 1 1.6055 -1.7197 -1.2951 33 1 3.9824 -0.4621 -0.4318 34 1 5.6741 -1.8596 0.0014 35 1 7.1694 -2.3718 -0.8197 36 1 4.4413 -3.7259 -1.0361 37 1 5.8529 -4.3463 -0.1467 38 1 6.0273 -4.2155 -4.2670 39 1 4.5439 -3.6491 -3.4624 40 1 7.2769 -2.2911 -3.3614 41 1 5.8558 -1.7242 -4.2722 42 1 2.4605 -2.7357 1.0518 43 1 1.5348 -2.2633 2.4969 44 1 0.7347 -2.3241 0.9080 45 1 4.3989 -2.5144 3.3865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485304623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:36 Heat of formation + Delta-G solvation = -214.063694 kcal Electronic energy + Delta-G solvation = -33582.989657 eV Core-core repulsion = 28800.366544 eV Total energy + Delta-G solvation = -4782.623113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.13773 -47.60096 -47.57215 -40.57826 -38.16190 -36.77129 -34.33588 -33.85851 -32.14607 -30.96885 -29.38704 -27.60704 -26.12249 -25.90542 -23.70057 -23.50019 -23.02669 -21.80192 -19.77249 -19.11048 -18.35432 -18.28419 -17.99845 -17.00694 -16.51220 -15.83222 -15.80802 -15.39042 -15.00094 -14.78311 -14.61067 -14.42715 -14.34782 -13.99668 -13.95109 -13.76988 -13.69182 -13.63447 -13.48600 -12.93094 -12.79820 -12.37594 -12.34043 -12.30845 -12.12060 -11.88978 -11.67761 -11.29286 -11.16477 -10.86442 -10.83550 -10.78761 -10.49654 -10.45406 -10.36293 -9.92971 -9.86389 -9.76539 -9.29861 -8.66104 -8.57669 -6.92655 -5.83905 -3.28801 2.35386 2.95988 3.28239 3.31789 3.38971 3.40213 3.73818 3.87071 4.01440 4.15299 4.39453 4.60908 4.65298 4.92418 4.99101 5.28391 5.30648 5.30918 5.38733 5.48513 5.51693 5.64221 5.76564 5.82328 5.85772 6.00035 6.01378 6.04648 6.12054 6.13923 6.24307 6.31012 6.61280 6.70896 6.79216 6.92446 7.29583 7.31412 7.62773 7.71653 7.90525 8.25889 8.46693 9.12008 9.74722 10.23134 11.19243 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011318 B = 0.005483 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.340374 B = 5105.006763 C = 5573.800364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.105 3.895 5 N -0.689 5.689 6 C 0.519 3.481 7 O -0.537 6.537 8 C -0.125 4.125 9 C 0.463 3.537 10 F -0.178 7.178 11 F -0.167 7.167 12 F -0.176 7.176 13 C -0.148 4.148 14 C 0.072 3.928 15 O -0.384 6.384 16 C 0.056 3.944 17 C -0.131 4.131 18 N -0.594 5.594 19 C 0.163 3.837 20 C -0.261 4.261 21 H 0.068 0.932 22 C 0.008 3.992 23 N -0.901 5.901 24 Si 0.899 3.101 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.419 0.581 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.029 0.971 43 H 0.042 0.958 44 H -0.001 1.001 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.200 0.137 -9.979 10.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.087 0.913 4 C -0.021 4.021 5 N -0.341 5.341 6 C 0.302 3.698 7 O -0.416 6.416 8 C -0.130 4.130 9 C 0.408 3.592 10 F -0.160 7.160 11 F -0.149 7.149 12 F -0.158 7.158 13 C -0.186 4.186 14 C -0.005 4.005 15 O -0.303 6.303 16 C -0.020 4.020 17 C -0.169 4.169 18 N -0.317 5.317 19 C 0.019 3.981 20 C -0.390 4.390 21 H 0.086 0.914 22 C -0.191 4.191 23 N -0.545 5.545 24 Si 0.729 3.271 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.206 1.206 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.259 0.741 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.017 0.983 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.980 -0.417 -10.489 10.912 hybrid contribution 0.691 1.184 1.352 1.925 sum 3.671 0.767 -9.137 9.877 Atomic orbital electron populations 1.22164 0.97262 1.01502 1.00773 1.20652 0.92755 0.95961 0.85809 0.91264 1.22055 0.79255 1.01329 0.99447 1.46049 1.08728 1.56546 1.22742 1.19544 0.87396 0.79446 0.83380 1.90619 1.69069 1.48310 1.33583 1.22273 0.95829 0.92140 1.02757 1.20178 0.76624 0.88377 0.74003 1.93192 1.91373 1.80120 1.51288 1.93221 1.87939 1.83020 1.50686 1.93171 1.30160 1.96331 1.96094 1.22380 1.03424 0.97352 0.95457 1.22471 0.98568 0.91786 0.87675 1.87903 1.75868 1.52442 1.14080 1.22755 1.01377 0.90166 0.87740 1.22096 1.01632 0.98098 0.95119 1.43971 1.57750 1.09685 1.20269 1.20758 0.94069 0.84352 0.98953 1.19222 1.17748 0.90836 1.11175 0.91392 1.24887 0.98016 0.96130 1.00097 1.70072 1.40126 1.07526 1.36817 0.86366 0.78343 0.78852 0.83529 1.21561 1.21766 1.20618 0.92909 0.92308 0.93526 0.92499 0.91994 0.74068 0.87326 0.89159 0.92369 0.87490 0.88632 0.90157 0.89563 0.89142 0.95274 0.93915 0.98275 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.18 37.16 0.34 -2.14 16 2 C 0.16 2.87 2.87 -67.93 -0.19 2.67 16 3 H 0.07 1.28 7.85 -51.93 -0.41 0.87 16 4 C 0.11 1.85 4.97 -4.04 -0.02 1.83 16 5 N -0.69 -12.58 4.96 -60.30 -0.30 -12.88 16 6 C 0.52 9.10 4.89 -10.98 -0.05 9.04 16 7 O -0.54 -10.14 13.84 5.56 0.08 -10.07 16 8 C -0.13 -1.92 0.25 -155.47 -0.04 -1.96 16 9 C 0.46 7.09 2.22 37.16 0.08 7.18 16 10 F -0.18 -2.74 16.58 2.25 0.04 -2.70 16 11 F -0.17 -2.83 14.65 2.25 0.03 -2.80 16 12 F -0.18 -2.53 16.18 2.25 0.04 -2.49 16 13 C -0.15 -2.28 4.61 -26.58 -0.12 -2.41 16 14 C 0.07 1.12 6.61 37.20 0.25 1.36 16 15 O -0.38 -5.87 10.77 -35.23 -0.38 -6.25 16 16 C 0.06 0.77 6.55 37.20 0.24 1.02 16 17 C -0.13 -1.76 4.31 -26.59 -0.11 -1.88 16 18 N -0.59 -12.98 2.29 -173.48 -0.40 -13.38 16 19 C 0.16 3.64 8.11 59.84 0.49 4.12 16 20 C -0.26 -6.34 9.34 -15.06 -0.14 -6.48 16 21 H 0.07 1.66 7.81 -52.48 -0.41 1.25 16 22 C 0.01 0.19 5.06 -17.43 -0.09 0.10 16 23 N -0.90 -23.03 10.66 55.49 0.59 -22.44 16 24 Si 0.90 20.41 29.58 -169.99 -5.03 15.38 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H 0.05 0.83 6.66 -51.93 -0.35 0.49 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.15 7.84 -51.93 -0.41 0.74 16 33 H 0.42 8.26 5.47 -40.82 -0.22 8.04 16 34 H 0.11 1.92 7.30 -51.93 -0.38 1.54 16 35 H 0.09 1.26 7.72 -51.93 -0.40 0.86 16 36 H 0.06 1.01 7.38 -51.93 -0.38 0.63 16 37 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.26 5.80 -51.93 -0.30 0.96 16 40 H 0.09 1.03 7.73 -51.93 -0.40 0.63 16 41 H 0.09 1.18 7.79 -51.93 -0.40 0.78 16 42 H 0.03 0.70 7.40 -51.93 -0.38 0.32 16 43 H 0.04 1.05 7.21 -51.93 -0.37 0.67 16 44 H 0.00 -0.02 6.44 -51.93 -0.33 -0.36 16 45 H 0.25 6.43 8.31 -40.82 -0.34 6.09 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -26.05 359.24 -5.69 -31.75 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.41 Total: 8.00 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 0.63 Total: 12.47 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.10 Total: -48.71 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.30 Total: -16.31 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 0.11 Total: -7.99 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -26.05 -5.69 -31.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485304623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.314 kcal (2) G-P(sol) polarization free energy of solvation -26.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds