Wall clock time and date at job start Tue Mar 31 2020 21:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47150 * 2 1 4 4 C 1.52999 * 109.47333 * 240.00103 * 2 1 3 5 5 N 1.46503 * 109.46844 * 185.00071 * 4 2 1 6 6 C 1.34784 * 119.99309 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00054 * 359.97438 * 6 5 4 8 8 C 1.50695 * 119.99437 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.54677 * 300.17450 * 8 6 5 10 10 F 1.39900 * 109.47014 * 299.82735 * 9 8 6 11 11 F 1.39899 * 109.47215 * 59.82272 * 9 8 6 12 12 F 1.39899 * 109.47671 * 179.82448 * 9 8 6 13 13 C 1.53201 * 109.54276 * 60.43873 * 8 6 5 14 14 C 1.53092 * 109.15262 * 62.89244 * 13 8 6 15 15 O 1.42904 * 109.42566 * 57.60549 * 14 13 8 16 16 C 1.42912 * 114.09365 * 298.83891 * 15 14 13 17 17 C 1.53092 * 109.41490 * 61.15810 * 16 15 14 18 18 N 1.46506 * 109.46939 * 119.99924 * 2 1 3 19 19 C 1.46494 * 120.00166 * 60.00613 * 18 2 1 20 20 C 1.36939 * 119.99821 * 239.99640 * 18 2 1 21 21 H 1.08009 * 119.99808 * 20.32918 * 20 18 2 22 22 C 1.38807 * 120.00126 * 200.32014 * 20 18 2 23 23 N 1.31620 * 119.99772 * 14.99958 * 22 20 18 24 24 Si 1.86800 * 120.00266 * 194.99853 * 22 20 18 25 25 H 1.48502 * 109.46812 * 85.00261 * 24 22 20 26 26 H 1.48498 * 109.47419 * 205.00138 * 24 22 20 27 27 H 1.48500 * 109.47365 * 325.00476 * 24 22 20 28 28 H 1.09005 * 109.46883 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47037 * 299.99634 * 1 2 3 30 30 H 1.08996 * 109.47374 * 60.00068 * 1 2 3 31 31 H 1.08993 * 109.46719 * 64.99739 * 4 2 1 32 32 H 1.08997 * 109.46924 * 304.99809 * 4 2 1 33 33 H 0.96992 * 120.00219 * 359.97438 * 5 4 2 34 34 H 1.09000 * 109.53797 * 302.98759 * 13 8 6 35 35 H 1.09003 * 109.51992 * 182.79194 * 13 8 6 36 36 H 1.09001 * 109.47902 * 297.61924 * 14 13 8 37 37 H 1.08997 * 109.48243 * 177.59549 * 14 13 8 38 38 H 1.09001 * 109.47699 * 181.13924 * 16 15 14 39 39 H 1.08999 * 109.47641 * 301.15992 * 16 15 14 40 40 H 1.09000 * 109.52497 * 62.29400 * 17 16 15 41 41 H 1.09003 * 109.52090 * 182.42118 * 17 16 15 42 42 H 1.08993 * 109.47436 * 95.11302 * 19 18 2 43 43 H 1.09003 * 109.46919 * 215.11735 * 19 18 2 44 44 H 1.09004 * 109.46832 * 335.10805 * 19 18 2 45 45 H 0.97002 * 119.99792 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1904 6 6 4.1731 -1.4282 -2.1911 7 8 3.5700 -1.8832 -3.1399 8 6 5.6751 -1.5358 -2.1310 9 6 6.2862 -0.1349 -2.0618 10 9 5.9200 0.5903 -3.2007 11 9 5.8172 0.5226 -0.9195 12 9 7.6803 -0.2367 -2.0020 13 6 6.0822 -2.3363 -0.8898 14 6 5.5304 -3.7596 -1.0068 15 8 6.0210 -4.3624 -2.2060 16 6 5.6316 -3.6835 -3.4018 17 6 6.1876 -2.2573 -3.3812 18 7 2.0183 -0.6906 1.1962 19 6 1.6645 -2.0932 1.4280 20 6 2.8056 -0.0251 2.0976 21 1 2.8043 1.0547 2.1219 22 6 3.6052 -0.7382 2.9802 23 7 3.8399 -2.0161 2.7700 24 14 4.3481 0.1158 4.4662 25 1 3.3654 0.1158 5.5796 26 1 5.5754 -0.6052 4.8893 27 1 4.6939 1.5156 4.1112 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.7516 -0.1583 -2.1368 32 1 1.6055 -1.7197 -1.2951 33 1 3.9824 -0.4621 -0.4318 34 1 5.6741 -1.8596 0.0014 35 1 7.1694 -2.3718 -0.8197 36 1 4.4413 -3.7259 -1.0361 37 1 5.8529 -4.3463 -0.1467 38 1 6.0273 -4.2155 -4.2670 39 1 4.5439 -3.6491 -3.4624 40 1 7.2769 -2.2911 -3.3614 41 1 5.8558 -1.7242 -4.2722 42 1 2.4605 -2.7357 1.0518 43 1 1.5348 -2.2633 2.4969 44 1 0.7347 -2.3241 0.9080 45 1 4.3989 -2.5144 3.3865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485304623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:35 Heat of formation + Delta-G solvation = -228.761319 kcal Electronic energy + Delta-G solvation = -33583.626994 eV Core-core repulsion = 28800.366544 eV Total energy + Delta-G solvation = -4783.260450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.37494 -48.84408 -48.80358 -41.88844 -39.49562 -38.33650 -35.65149 -35.39878 -33.76462 -32.18230 -31.06993 -28.83528 -27.96876 -27.26296 -25.02929 -24.87692 -24.49691 -23.10450 -21.23979 -20.53205 -19.59307 -19.52657 -19.26798 -18.81409 -17.81525 -17.24785 -17.05938 -17.01293 -16.32436 -16.25189 -15.84412 -15.79512 -15.64395 -15.49813 -15.22437 -15.05488 -14.94659 -14.92924 -14.74216 -14.63908 -14.37808 -13.87242 -13.67301 -13.49720 -13.45438 -13.27448 -13.10414 -12.83527 -12.59340 -12.48830 -12.46506 -12.26133 -12.09469 -12.01489 -11.72432 -11.69261 -11.48458 -11.06948 -10.58902 -10.54532 -10.02663 -8.75966 -7.74398 -5.19486 1.04129 1.49050 1.53566 1.57469 1.65253 1.95497 2.49619 2.54589 2.66061 2.83596 2.89692 3.38337 3.40249 3.42424 3.57667 3.68502 3.81099 4.03710 4.10522 4.21316 4.36179 4.37765 4.50363 4.59455 4.60392 4.68700 4.71185 4.79221 4.81620 4.85699 4.91958 4.98502 5.09484 5.26553 5.33470 5.41681 5.57115 5.72638 5.79449 6.10654 6.37880 6.45106 7.02212 7.22594 7.92918 8.37248 9.26328 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011318 B = 0.005483 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.340374 B = 5105.006763 C = 5573.800364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.155 3.845 3 H 0.068 0.932 4 C 0.110 3.890 5 N -0.696 5.696 6 C 0.518 3.482 7 O -0.551 6.551 8 C -0.122 4.122 9 C 0.466 3.534 10 F -0.177 7.177 11 F -0.179 7.179 12 F -0.168 7.168 13 C -0.141 4.141 14 C 0.077 3.923 15 O -0.387 6.387 16 C 0.055 3.945 17 C -0.128 4.128 18 N -0.600 5.600 19 C 0.181 3.819 20 C -0.260 4.260 21 H 0.067 0.933 22 C -0.033 4.033 23 N -0.917 5.917 24 Si 0.947 3.053 25 H -0.295 1.295 26 H -0.298 1.298 27 H -0.276 1.276 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.412 0.588 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.033 0.967 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.059 0.941 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.006 0.994 43 H 0.014 0.986 44 H 0.022 0.978 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.569 0.689 -11.227 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.047 3.953 3 H 0.087 0.913 4 C -0.015 4.015 5 N -0.347 5.347 6 C 0.302 3.698 7 O -0.431 6.431 8 C -0.127 4.127 9 C 0.411 3.589 10 F -0.159 7.159 11 F -0.160 7.160 12 F -0.149 7.149 13 C -0.179 4.179 14 C 0.001 3.999 15 O -0.305 6.305 16 C -0.022 4.022 17 C -0.166 4.166 18 N -0.324 5.324 19 C 0.036 3.964 20 C -0.390 4.390 21 H 0.085 0.915 22 C -0.230 4.230 23 N -0.563 5.563 24 Si 0.777 3.223 25 H -0.222 1.222 26 H -0.225 1.225 27 H -0.201 1.201 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.251 0.749 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.051 0.949 37 H 0.131 0.869 38 H 0.145 0.855 39 H 0.077 0.923 40 H 0.125 0.875 41 H 0.115 0.885 42 H 0.024 0.976 43 H 0.033 0.967 44 H 0.040 0.960 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.331 0.156 -11.764 12.227 hybrid contribution 0.536 1.032 1.681 2.044 sum 3.866 1.188 -10.083 10.864 Atomic orbital electron populations 1.22051 0.94839 1.01800 1.02019 1.20832 0.94416 0.95436 0.84570 0.91340 1.21994 0.79072 1.00817 0.99635 1.46147 1.09004 1.56781 1.22724 1.19871 0.88383 0.78743 0.82831 1.90611 1.69723 1.48728 1.34026 1.22283 0.94268 0.92424 1.03736 1.20125 0.76948 0.88136 0.73659 1.93194 1.91423 1.80106 1.51130 1.93202 1.88152 1.83257 1.51394 1.93187 1.29386 1.96273 1.96038 1.22279 1.04268 0.96848 0.94466 1.22349 0.97043 0.92180 0.88368 1.87905 1.75641 1.52744 1.14254 1.22870 1.00340 0.90865 0.88088 1.22170 1.02798 0.97473 0.94170 1.44055 1.57536 1.09463 1.21322 1.20443 0.94270 0.84496 0.97156 1.19395 1.17280 0.90911 1.11394 0.91496 1.25380 0.98994 0.96695 1.01917 1.70190 1.40803 1.08236 1.37100 0.85603 0.77195 0.78224 0.81233 1.22222 1.22483 1.20083 0.93043 0.92826 0.90523 0.90819 0.93011 0.74895 0.89900 0.87352 0.94858 0.86908 0.85539 0.92309 0.87470 0.88491 0.97561 0.96714 0.95955 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 9.18 71.98 0.66 -3.68 16 2 C 0.15 5.48 2.87 44.99 0.13 5.61 16 3 H 0.07 2.44 7.85 -2.39 -0.02 2.42 16 4 C 0.11 3.79 4.97 86.38 0.43 4.21 16 5 N -0.70 -25.28 4.96 -463.06 -2.30 -27.58 16 6 C 0.52 17.88 4.89 87.65 0.43 18.31 16 7 O -0.55 -20.45 13.84 -3.03 -0.04 -20.49 16 8 C -0.12 -3.62 0.25 -52.80 -0.01 -3.63 16 9 C 0.47 13.65 2.22 71.98 0.16 13.81 16 10 F -0.18 -5.15 16.58 44.97 0.75 -4.41 16 11 F -0.18 -5.95 14.65 44.97 0.66 -5.29 16 12 F -0.17 -4.47 16.18 44.97 0.73 -3.74 16 13 C -0.14 -4.27 4.61 30.69 0.14 -4.13 16 14 C 0.08 2.41 6.61 72.01 0.48 2.88 16 15 O -0.39 -11.29 10.77 -148.98 -1.60 -12.89 16 16 C 0.05 1.40 6.55 72.01 0.47 1.88 16 17 C -0.13 -3.16 4.31 30.68 0.13 -3.03 16 18 N -0.60 -26.19 2.29 -702.78 -1.61 -27.80 16 19 C 0.18 8.17 8.11 127.77 1.04 9.20 16 20 C -0.26 -12.65 9.34 84.03 0.79 -11.86 16 21 H 0.07 3.24 7.81 -2.91 -0.02 3.22 16 22 C -0.03 -1.66 5.06 84.86 0.43 -1.24 16 23 N -0.92 -47.87 10.66 21.65 0.23 -47.64 16 24 Si 0.95 42.20 29.58 68.60 2.03 44.23 16 25 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 26 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 28 H 0.05 1.52 6.66 -2.38 -0.02 1.50 16 29 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.05 1.88 7.84 -2.39 -0.02 1.86 16 33 H 0.41 16.35 5.47 -92.71 -0.51 15.84 16 34 H 0.08 2.99 7.30 -2.39 -0.02 2.97 16 35 H 0.11 2.87 7.72 -2.39 -0.02 2.85 16 36 H 0.03 1.19 7.38 -2.39 -0.02 1.18 16 37 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.06 1.80 5.80 -2.39 -0.01 1.79 16 40 H 0.11 2.22 7.73 -2.39 -0.02 2.20 16 41 H 0.10 2.30 7.79 -2.39 -0.02 2.28 16 42 H 0.01 0.30 7.40 -2.39 -0.02 0.29 16 43 H 0.01 0.71 7.21 -2.39 -0.02 0.70 16 44 H 0.02 0.88 6.44 -2.38 -0.02 0.86 16 45 H 0.25 12.80 8.31 -92.71 -0.77 12.03 16 Total: -1.00 -55.13 359.24 4.62 -50.51 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.52 Total: 26.75 kcal Atomic # 6 Polarization: 23.09 SS G_CDS: 5.27 Total: 28.35 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -3.67 Total: -103.01 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -1.65 Total: -33.38 kcal Atomic # 9 Polarization: -15.57 SS G_CDS: 2.13 Total: -13.44 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -55.13 4.62 -50.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485304623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.254 kcal (2) G-P(sol) polarization free energy of solvation -55.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds