Wall clock time and date at job start Tue Mar 31 2020 20:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46984 * 2 1 4 4 C 1.53005 * 109.47017 * 240.00152 * 2 1 3 5 5 C 1.50703 * 109.47055 * 65.00176 * 4 2 1 6 6 C 1.38256 * 119.99437 * 90.00002 * 5 4 2 7 7 C 1.38224 * 120.02783 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00946 * 359.97438 * 7 6 5 9 9 C 1.38329 * 119.99106 * 0.02562 * 8 7 6 10 10 Cl 1.73600 * 120.01586 * 179.97438 * 9 8 7 11 11 C 1.38193 * 119.99095 * 269.72770 * 5 4 2 12 12 C 1.50697 * 109.46968 * 120.00348 * 2 1 3 13 13 O 1.21281 * 120.00252 * 120.00064 * 12 2 1 14 14 N 1.34780 * 119.99839 * 299.99880 * 12 2 1 15 15 C 1.46498 * 119.99753 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.47124 * 180.02562 * 15 14 12 17 17 H 1.08998 * 109.47450 * 64.99253 * 16 15 14 18 18 C 1.52998 * 109.47568 * 184.99734 * 16 15 14 19 19 N 1.46501 * 109.47031 * 304.99699 * 16 15 14 20 20 C 1.46502 * 120.00188 * 299.99993 * 19 16 15 21 21 C 1.36936 * 120.00327 * 119.99875 * 19 16 15 22 22 H 1.08000 * 119.99904 * 21.93399 * 21 19 16 23 23 C 1.38816 * 120.00280 * 201.94202 * 21 19 16 24 24 N 1.31618 * 119.99694 * 12.70798 * 23 21 19 25 25 Si 1.86800 * 120.00056 * 192.71446 * 23 21 19 26 26 H 1.48503 * 109.46928 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47379 * 119.99754 * 25 23 21 28 28 H 1.48507 * 109.46886 * 239.99938 * 25 23 21 29 29 H 1.08994 * 109.47520 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47168 * 300.00350 * 1 2 3 31 31 H 1.09006 * 109.47256 * 59.99863 * 1 2 3 32 32 H 1.08996 * 109.47054 * 184.99914 * 4 2 1 33 33 H 1.09000 * 109.47187 * 305.00193 * 4 2 1 34 34 H 1.08001 * 119.98919 * 0.02562 * 6 5 4 35 35 H 1.08002 * 119.99500 * 180.02562 * 7 6 5 36 36 H 1.08007 * 120.00223 * 179.97438 * 8 7 6 37 37 H 1.08008 * 120.00859 * 359.97438 * 11 5 4 38 38 H 0.96999 * 120.00000 * 359.97438 * 14 12 2 39 39 H 1.09006 * 109.46798 * 299.99441 * 15 14 12 40 40 H 1.08991 * 109.47561 * 59.99545 * 15 14 12 41 41 H 1.09002 * 109.46561 * 59.99784 * 18 16 15 42 42 H 1.09002 * 109.47366 * 179.97438 * 18 16 15 43 43 H 1.09001 * 109.46786 * 299.99829 * 18 16 15 44 44 H 1.09007 * 109.46719 * 94.30667 * 20 19 16 45 45 H 1.08993 * 109.47511 * 214.30971 * 20 19 16 46 46 H 1.09003 * 109.46666 * 334.31322 * 20 19 16 47 47 H 0.97001 * 119.99865 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 6 2.4817 1.0332 -2.9792 7 6 2.1169 1.7472 -4.1052 8 6 0.9118 1.4852 -4.7297 9 6 0.0706 0.5088 -4.2273 10 17 -1.4432 0.1797 -5.0106 11 6 0.4384 -0.2088 -3.1027 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1954 -0.9404 3.6507 16 6 1.6848 -0.2197 4.8999 17 1 0.5986 -0.2972 4.9457 18 6 2.2952 -0.8643 6.1460 19 7 2.0714 1.1922 4.8414 20 6 3.4874 1.5618 4.7736 21 6 1.1093 2.1665 4.8502 22 1 0.1274 1.9523 5.2458 23 6 1.3958 3.4295 4.3505 24 7 2.4905 3.6259 3.6466 25 14 0.2279 4.8503 4.6772 26 1 -0.9210 4.3705 5.4866 27 1 0.9440 5.9195 5.4184 28 1 -0.2682 5.3903 3.3857 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 3.1263 -0.7995 -1.2057 33 1 1.6054 -1.7198 -1.2953 34 1 3.4239 1.2374 -2.4924 35 1 2.7740 2.5092 -4.4976 36 1 0.6268 2.0435 -5.6092 37 1 -0.2158 -0.9746 -2.7128 38 1 1.1493 0.5389 2.5435 39 1 1.8324 -1.9682 3.6507 40 1 3.2854 -0.9401 3.6505 41 1 3.3815 -0.7866 6.1002 42 1 1.9317 -0.3505 7.0360 43 1 2.0075 -1.9148 6.1895 44 1 3.7781 1.6969 3.7317 45 1 3.6468 2.4920 5.3188 46 1 4.0910 0.7712 5.2195 47 1 2.6909 4.5086 3.2977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485393021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:42 Heat of formation + Delta-G solvation = -15.696990 kcal Electronic energy + Delta-G solvation = -27281.944318 eV Core-core repulsion = 23490.488935 eV Total energy + Delta-G solvation = -3791.455383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.97153 -39.07120 -36.85908 -36.61972 -34.75450 -33.67544 -32.10600 -30.91752 -30.84002 -29.29449 -26.80975 -26.07833 -25.86370 -23.47184 -22.89877 -22.73410 -21.11125 -19.52409 -19.02158 -17.19508 -16.95667 -16.51469 -15.81867 -15.67062 -15.41223 -15.23698 -14.84578 -14.16885 -13.96148 -13.94822 -13.57610 -13.35990 -13.06171 -12.83366 -12.69310 -12.57375 -12.19262 -12.05532 -11.99982 -11.74554 -11.63816 -11.52642 -11.51658 -11.12750 -11.00234 -10.91034 -10.85084 -10.83143 -10.72082 -10.43752 -10.30065 -9.89482 -9.81268 -9.27583 -9.02148 -8.77391 -8.63643 -8.34113 -6.85836 -5.80183 -3.26895 1.00840 1.10401 1.95459 3.17511 3.31193 3.40375 3.40836 3.43583 3.84717 4.41219 4.59517 4.66019 4.89130 5.00145 5.05730 5.12159 5.24781 5.27406 5.33343 5.37246 5.45611 5.59231 5.65886 5.70744 5.79225 5.90117 5.94313 5.98841 6.04663 6.07708 6.14132 6.18142 6.24524 6.27641 6.35802 6.38732 6.47124 6.65651 6.67803 6.78671 6.88616 7.15995 7.36669 7.68927 7.75284 8.23552 8.30704 8.82971 9.15588 9.78864 10.28276 11.22975 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011570 B = 0.002976 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.539697 B = 9404.995960 C =10598.885622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 H 0.101 0.899 4 C -0.061 4.061 5 C -0.060 4.060 6 C -0.110 4.110 7 C -0.105 4.105 8 C -0.119 4.119 9 C -0.034 4.034 10 Cl -0.077 7.077 11 C -0.107 4.107 12 C 0.515 3.485 13 O -0.565 6.565 14 N -0.698 5.698 15 C 0.108 3.892 16 C 0.158 3.842 17 H 0.068 0.932 18 C -0.158 4.158 19 N -0.594 5.594 20 C 0.164 3.836 21 C -0.260 4.260 22 H 0.068 0.932 23 C 0.006 3.994 24 N -0.901 5.901 25 Si 0.900 3.100 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.415 0.585 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.028 0.972 45 H 0.042 0.958 46 H -0.002 1.002 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.997 -6.357 -13.241 14.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 H 0.119 0.881 4 C -0.098 4.098 5 C -0.060 4.060 6 C -0.128 4.128 7 C -0.123 4.123 8 C -0.138 4.138 9 C -0.060 4.060 10 Cl -0.048 7.048 11 C -0.125 4.125 12 C 0.301 3.699 13 O -0.446 6.446 14 N -0.348 5.348 15 C -0.019 4.019 16 C 0.049 3.951 17 H 0.086 0.914 18 C -0.218 4.218 19 N -0.317 5.317 20 C 0.019 3.981 21 C -0.390 4.390 22 H 0.086 0.914 23 C -0.193 4.193 24 N -0.546 5.546 25 Si 0.730 3.270 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.252 0.748 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.061 0.939 46 H 0.017 0.983 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.585 -6.901 -13.418 15.308 hybrid contribution -0.894 1.407 0.116 1.671 sum -3.478 -5.494 -13.302 14.806 Atomic orbital electron populations 1.21847 0.93107 1.02287 1.03106 1.21213 0.97620 1.01255 0.92452 0.88122 1.20428 1.02432 0.97880 0.89099 1.19913 0.93435 0.96316 0.96358 1.21261 1.00115 0.95343 0.96068 1.21116 0.95963 0.99532 0.95689 1.21019 0.94287 0.97586 1.00894 1.20908 0.88921 0.99717 0.96470 1.98366 1.31328 1.94898 1.80243 1.20996 0.96958 1.00194 0.94372 1.20400 0.80214 0.84383 0.84928 1.90627 1.39373 1.27339 1.87228 1.45856 1.52415 1.31824 1.04724 1.21918 0.99121 0.94805 0.86039 1.20644 0.97913 0.85512 0.91034 0.91418 1.22174 1.01288 0.99030 0.99294 1.43952 1.02852 0.99033 1.85881 1.20748 0.82603 0.95577 0.99146 1.19263 0.94207 0.91052 1.34439 0.91414 1.24965 0.97631 0.98584 0.98083 1.70093 1.26031 1.21597 1.36867 0.86267 0.80332 0.82878 0.77526 1.20396 1.21701 1.21762 0.92355 0.91508 0.91572 0.89716 0.90175 0.85142 0.85105 0.85233 0.84910 0.74815 0.93008 0.92517 0.92969 0.92456 0.93583 0.95341 0.93944 0.98348 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.67 37.16 0.32 -1.54 16 2 C -0.10 -1.49 2.71 -91.77 -0.25 -1.74 16 3 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 4 C -0.06 -0.77 4.19 -27.88 -0.12 -0.89 16 5 C -0.06 -0.69 4.70 -104.63 -0.49 -1.18 16 6 C -0.11 -1.19 9.70 -39.58 -0.38 -1.57 16 7 C -0.10 -1.01 10.05 -39.59 -0.40 -1.41 16 8 C -0.12 -1.18 9.83 -39.55 -0.39 -1.57 16 9 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 16 10 Cl -0.08 -0.79 28.96 -51.86 -1.50 -2.29 16 11 C -0.11 -1.17 7.77 -39.55 -0.31 -1.48 16 12 C 0.52 9.15 7.15 -10.99 -0.08 9.08 16 13 O -0.57 -11.46 15.92 5.56 0.09 -11.37 16 14 N -0.70 -12.89 5.28 -60.30 -0.32 -13.21 16 15 C 0.11 1.97 4.97 -4.04 -0.02 1.95 16 16 C 0.16 2.95 2.87 -67.93 -0.19 2.76 16 17 H 0.07 1.26 7.86 -51.93 -0.41 0.85 16 18 C -0.16 -2.58 9.18 37.16 0.34 -2.24 16 19 N -0.59 -13.43 2.29 -173.48 -0.40 -13.83 16 20 C 0.16 3.83 8.11 59.85 0.49 4.31 16 21 C -0.26 -6.46 9.33 -15.06 -0.14 -6.60 16 22 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 23 C 0.01 0.16 5.10 -17.43 -0.09 0.07 16 24 N -0.90 -24.20 10.63 55.49 0.59 -23.61 16 25 Si 0.90 20.57 29.57 -169.99 -5.03 15.54 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.90 7.56 -51.93 -0.39 0.51 16 31 H 0.07 0.78 6.28 -51.93 -0.33 0.45 16 32 H 0.08 1.14 7.90 -51.93 -0.41 0.73 16 33 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.13 1.35 8.05 -52.48 -0.42 0.92 16 38 H 0.41 8.10 7.31 -40.82 -0.30 7.80 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.06 1.12 7.84 -51.93 -0.41 0.71 16 41 H 0.05 0.86 6.66 -51.93 -0.35 0.52 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 45 H 0.04 1.08 7.20 -51.93 -0.37 0.71 16 46 H 0.00 -0.04 6.43 -51.93 -0.33 -0.38 16 47 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 394.23 15.07 5.94 5.94 Total: -1.00 -28.08 394.23 -10.04 -38.12 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.45 Total: 7.38 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -1.96 Total: -2.67 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.13 Total: -50.65 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.08 -10.04 -38.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485393021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.420 kcal (2) G-P(sol) polarization free energy of solvation -28.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds