Wall clock time and date at job start Tue Mar 31 2020 20:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46984 * 2 1 4 4 C 1.53005 * 109.47017 * 240.00152 * 2 1 3 5 5 C 1.50703 * 109.47055 * 65.00176 * 4 2 1 6 6 C 1.38256 * 119.99437 * 90.00002 * 5 4 2 7 7 C 1.38224 * 120.02783 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00946 * 359.97438 * 7 6 5 9 9 C 1.38329 * 119.99106 * 0.02562 * 8 7 6 10 10 Cl 1.73600 * 120.01586 * 179.97438 * 9 8 7 11 11 C 1.38193 * 119.99095 * 269.72770 * 5 4 2 12 12 C 1.50697 * 109.46968 * 120.00348 * 2 1 3 13 13 O 1.21281 * 120.00252 * 120.00064 * 12 2 1 14 14 N 1.34780 * 119.99839 * 299.99880 * 12 2 1 15 15 C 1.46498 * 119.99753 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.47124 * 180.02562 * 15 14 12 17 17 H 1.08998 * 109.47450 * 64.99253 * 16 15 14 18 18 C 1.52998 * 109.47568 * 184.99734 * 16 15 14 19 19 N 1.46501 * 109.47031 * 304.99699 * 16 15 14 20 20 C 1.46502 * 120.00188 * 299.99993 * 19 16 15 21 21 C 1.36936 * 120.00327 * 119.99875 * 19 16 15 22 22 H 1.08000 * 119.99904 * 21.93399 * 21 19 16 23 23 C 1.38816 * 120.00280 * 201.94202 * 21 19 16 24 24 N 1.31618 * 119.99694 * 12.70798 * 23 21 19 25 25 Si 1.86800 * 120.00056 * 192.71446 * 23 21 19 26 26 H 1.48503 * 109.46928 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47379 * 119.99754 * 25 23 21 28 28 H 1.48507 * 109.46886 * 239.99938 * 25 23 21 29 29 H 1.08994 * 109.47520 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47168 * 300.00350 * 1 2 3 31 31 H 1.09006 * 109.47256 * 59.99863 * 1 2 3 32 32 H 1.08996 * 109.47054 * 184.99914 * 4 2 1 33 33 H 1.09000 * 109.47187 * 305.00193 * 4 2 1 34 34 H 1.08001 * 119.98919 * 0.02562 * 6 5 4 35 35 H 1.08002 * 119.99500 * 180.02562 * 7 6 5 36 36 H 1.08007 * 120.00223 * 179.97438 * 8 7 6 37 37 H 1.08008 * 120.00859 * 359.97438 * 11 5 4 38 38 H 0.96999 * 120.00000 * 359.97438 * 14 12 2 39 39 H 1.09006 * 109.46798 * 299.99441 * 15 14 12 40 40 H 1.08991 * 109.47561 * 59.99545 * 15 14 12 41 41 H 1.09002 * 109.46561 * 59.99784 * 18 16 15 42 42 H 1.09002 * 109.47366 * 179.97438 * 18 16 15 43 43 H 1.09001 * 109.46786 * 299.99829 * 18 16 15 44 44 H 1.09007 * 109.46719 * 94.30667 * 20 19 16 45 45 H 1.08993 * 109.47511 * 214.30971 * 20 19 16 46 46 H 1.09003 * 109.46666 * 334.31322 * 20 19 16 47 47 H 0.97001 * 119.99865 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 6 2.4817 1.0332 -2.9792 7 6 2.1169 1.7472 -4.1052 8 6 0.9118 1.4852 -4.7297 9 6 0.0706 0.5088 -4.2273 10 17 -1.4432 0.1797 -5.0106 11 6 0.4384 -0.2088 -3.1027 12 6 2.0323 -0.7105 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1954 -0.9404 3.6507 16 6 1.6848 -0.2197 4.8999 17 1 0.5986 -0.2972 4.9457 18 6 2.2952 -0.8643 6.1460 19 7 2.0714 1.1922 4.8414 20 6 3.4874 1.5618 4.7736 21 6 1.1093 2.1665 4.8502 22 1 0.1274 1.9523 5.2458 23 6 1.3958 3.4295 4.3505 24 7 2.4905 3.6259 3.6466 25 14 0.2279 4.8503 4.6772 26 1 -0.9210 4.3705 5.4866 27 1 0.9440 5.9195 5.4184 28 1 -0.2682 5.3903 3.3857 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 3.1263 -0.7995 -1.2057 33 1 1.6054 -1.7198 -1.2953 34 1 3.4239 1.2374 -2.4924 35 1 2.7740 2.5092 -4.4976 36 1 0.6268 2.0435 -5.6092 37 1 -0.2158 -0.9746 -2.7128 38 1 1.1493 0.5389 2.5435 39 1 1.8324 -1.9682 3.6507 40 1 3.2854 -0.9401 3.6505 41 1 3.3815 -0.7866 6.1002 42 1 1.9317 -0.3505 7.0360 43 1 2.0075 -1.9148 6.1895 44 1 3.7781 1.6969 3.7317 45 1 3.6468 2.4920 5.3188 46 1 4.0910 0.7712 5.2195 47 1 2.6909 4.5086 3.2977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485393021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:41 Heat of formation + Delta-G solvation = -28.610416 kcal Electronic energy + Delta-G solvation = -27282.504286 eV Core-core repulsion = 23490.488935 eV Total energy + Delta-G solvation = -3792.015351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.12047 -40.19546 -38.43027 -37.49877 -35.86242 -35.33824 -33.74274 -31.90793 -31.70050 -30.98386 -27.98889 -27.79476 -27.24868 -25.01799 -24.25593 -23.57306 -22.10981 -21.07691 -20.43612 -18.82526 -18.21408 -17.64852 -17.12638 -16.93867 -16.71517 -16.35596 -16.22656 -15.72648 -15.26751 -14.95780 -14.70297 -14.58346 -14.48322 -14.28267 -13.88522 -13.80203 -13.62531 -13.53277 -13.15181 -13.09957 -12.83500 -12.64456 -12.59593 -12.47067 -12.41082 -12.36014 -12.25868 -12.06282 -11.99684 -11.93706 -11.74028 -11.72133 -11.45784 -10.70447 -10.58473 -9.85708 -9.83828 -9.62164 -8.75396 -7.75594 -5.23147 0.18448 0.29616 1.15137 1.48637 1.53615 1.60396 1.74055 2.39643 2.54583 2.69148 3.38485 3.60399 3.68839 3.83152 3.88767 4.00344 4.04890 4.10384 4.19978 4.32832 4.40197 4.42291 4.47411 4.60191 4.63420 4.73485 4.81882 4.83504 4.85699 4.86976 4.89021 5.02148 5.10207 5.16792 5.21908 5.27261 5.29254 5.32757 5.39192 5.50447 5.59191 5.66504 5.73476 5.77500 5.85275 6.37707 6.73831 7.20872 7.35675 7.92244 8.37711 9.26111 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011570 B = 0.002976 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.539697 B = 9404.995960 C =10598.885622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 H 0.091 0.909 4 C -0.051 4.051 5 C -0.069 4.069 6 C -0.121 4.121 7 C -0.104 4.104 8 C -0.119 4.119 9 C -0.044 4.044 10 Cl -0.074 7.074 11 C -0.111 4.111 12 C 0.512 3.488 13 O -0.591 6.591 14 N -0.702 5.702 15 C 0.113 3.887 16 C 0.156 3.844 17 H 0.073 0.927 18 C -0.149 4.149 19 N -0.602 5.602 20 C 0.182 3.818 21 C -0.257 4.257 22 H 0.073 0.927 23 C -0.039 4.039 24 N -0.928 5.928 25 Si 0.955 3.045 26 H -0.269 1.269 27 H -0.300 1.300 28 H -0.294 1.294 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.410 0.590 39 H 0.068 0.932 40 H 0.039 0.961 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.000 1.000 45 H 0.014 0.986 46 H 0.021 0.979 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 -6.802 -13.691 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 H 0.109 0.891 4 C -0.089 4.089 5 C -0.070 4.070 6 C -0.139 4.139 7 C -0.122 4.122 8 C -0.138 4.138 9 C -0.070 4.070 10 Cl -0.045 7.045 11 C -0.130 4.130 12 C 0.299 3.701 13 O -0.473 6.473 14 N -0.351 5.351 15 C -0.013 4.013 16 C 0.049 3.951 17 H 0.091 0.909 18 C -0.209 4.209 19 N -0.325 5.325 20 C 0.037 3.963 21 C -0.388 4.388 22 H 0.090 0.910 23 C -0.235 4.235 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.193 1.193 27 H -0.228 1.228 28 H -0.221 1.221 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.151 0.849 35 H 0.173 0.827 36 H 0.166 0.834 37 H 0.157 0.843 38 H 0.246 0.754 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.019 0.981 45 H 0.033 0.967 46 H 0.040 0.960 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.762 -7.377 -13.853 16.140 hybrid contribution -0.529 1.490 0.257 1.602 sum -4.291 -5.887 -13.596 15.425 Atomic orbital electron populations 1.21797 0.91608 1.02966 1.03216 1.21177 0.98755 1.00278 0.91555 0.89087 1.20288 1.01600 0.97952 0.89025 1.19784 0.94105 0.96885 0.96190 1.21438 1.00307 0.95461 0.96695 1.21395 0.96214 0.99572 0.95010 1.21309 0.94015 0.97174 1.01274 1.21041 0.89324 1.00063 0.96580 1.98366 1.31101 1.94913 1.80107 1.21060 0.96857 1.00473 0.94598 1.20966 0.79511 0.84050 0.85548 1.90607 1.40495 1.28615 1.87606 1.45948 1.52340 1.31609 1.05222 1.21841 0.98048 0.95585 0.85803 1.20833 0.98462 0.83504 0.92286 0.90893 1.22066 1.00737 1.00602 0.97467 1.44074 1.02109 1.00520 1.85810 1.20412 0.83688 0.95075 0.97105 1.19522 0.94572 0.91545 1.33111 0.90959 1.25540 0.98906 1.00531 0.98554 1.70239 1.27596 1.21376 1.38246 0.85387 0.78944 0.80192 0.76951 1.19340 1.22803 1.22147 0.91386 0.92355 0.90420 0.90874 0.90102 0.84851 0.82749 0.83357 0.84315 0.75410 0.91337 0.94209 0.93376 0.92797 0.90517 0.98137 0.96688 0.96027 0.94578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.67 71.98 0.62 -2.79 16 2 C -0.10 -2.76 2.71 -11.54 -0.03 -2.80 16 3 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 4 C -0.05 -1.29 4.19 29.85 0.13 -1.16 16 5 C -0.07 -1.55 4.70 -19.87 -0.09 -1.64 16 6 C -0.12 -2.51 9.70 22.27 0.22 -2.30 16 7 C -0.10 -1.82 10.05 22.27 0.22 -1.60 16 8 C -0.12 -2.12 9.83 22.29 0.22 -1.90 16 9 C -0.04 -0.87 6.32 22.32 0.14 -0.73 16 10 Cl -0.07 -1.39 28.96 -2.72 -0.08 -1.47 16 11 C -0.11 -2.32 7.77 22.29 0.17 -2.15 16 12 C 0.51 18.24 7.15 87.66 0.63 18.87 16 13 O -0.59 -24.00 15.92 -3.03 -0.05 -24.05 16 14 N -0.70 -25.85 5.28 -463.07 -2.45 -28.29 16 15 C 0.11 4.04 4.97 86.38 0.43 4.47 16 16 C 0.16 5.63 2.87 44.99 0.13 5.76 16 17 H 0.07 2.57 7.86 -2.39 -0.02 2.55 16 18 C -0.15 -4.53 9.18 71.98 0.66 -3.87 16 19 N -0.60 -26.96 2.29 -702.78 -1.61 -28.56 16 20 C 0.18 8.60 8.11 127.77 1.04 9.64 16 21 C -0.26 -12.65 9.33 84.03 0.78 -11.86 16 22 H 0.07 3.46 7.81 -2.91 -0.02 3.43 16 23 C -0.04 -2.01 5.10 84.86 0.43 -1.58 16 24 N -0.93 -50.72 10.63 21.65 0.23 -50.49 16 25 Si 0.96 42.30 29.57 68.60 2.03 44.32 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 28 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.53 7.56 -2.39 -0.02 1.51 16 31 H 0.08 1.74 6.28 -2.38 -0.01 1.73 16 32 H 0.07 2.00 7.90 -2.39 -0.02 1.98 16 33 H 0.08 2.01 8.08 -2.39 -0.02 1.99 16 34 H 0.13 2.62 8.06 -2.91 -0.02 2.59 16 35 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 37 H 0.14 2.64 8.05 -2.91 -0.02 2.62 16 38 H 0.41 16.04 7.31 -92.71 -0.68 15.36 16 39 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 40 H 0.04 1.56 7.84 -2.39 -0.02 1.54 16 41 H 0.05 1.49 6.66 -2.39 -0.02 1.47 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.00 0.02 7.42 -2.38 -0.02 0.00 16 45 H 0.01 0.75 7.20 -2.39 -0.02 0.74 16 46 H 0.02 0.89 6.43 -2.39 -0.02 0.88 16 47 H 0.24 13.25 8.31 -92.71 -0.77 12.48 16 Total: -1.00 -59.53 394.23 4.06 -55.47 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.28 Total: 28.71 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 5.70 Total: 4.36 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -3.82 Total: -107.34 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.05 Total: -24.05 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -59.53 4.06 -55.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485393021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.855 kcal (2) G-P(sol) polarization free energy of solvation -59.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds