Wall clock time and date at job start Tue Mar 31 2020 20:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47111 * 2 1 4 4 C 1.52998 * 109.47256 * 239.99812 * 2 1 3 5 5 C 1.50694 * 109.47124 * 65.00182 * 4 2 1 6 6 C 1.38265 * 119.99550 * 89.99757 * 5 4 2 7 7 C 1.38216 * 120.03089 * 180.02562 * 6 5 4 8 8 C 1.38238 * 120.00918 * 0.02562 * 7 6 5 9 9 C 1.38324 * 119.99017 * 0.02562 * 8 7 6 10 10 Cl 1.73604 * 120.01451 * 179.97438 * 9 8 7 11 11 C 1.38193 * 119.99278 * 269.72973 * 5 4 2 12 12 C 1.50702 * 109.46796 * 120.00174 * 2 1 3 13 13 O 1.21274 * 120.00319 * 120.00216 * 12 2 1 14 14 N 1.34783 * 119.99643 * 299.99658 * 12 2 1 15 15 C 1.46500 * 119.99670 * 180.02562 * 14 12 2 16 16 C 1.53006 * 109.47150 * 180.02562 * 15 14 12 17 17 H 1.08997 * 109.46705 * 294.99552 * 16 15 14 18 18 C 1.52998 * 109.46946 * 174.99817 * 16 15 14 19 19 N 1.46494 * 109.46961 * 54.99680 * 16 15 14 20 20 C 1.46508 * 119.99868 * 60.00502 * 19 16 15 21 21 C 1.36932 * 120.00288 * 240.00096 * 19 16 15 22 22 H 1.08001 * 119.99846 * 22.82539 * 21 19 16 23 23 C 1.38815 * 120.00462 * 202.82239 * 21 19 16 24 24 N 1.31623 * 119.99617 * 11.58773 * 23 21 19 25 25 Si 1.86796 * 120.00324 * 191.58489 * 23 21 19 26 26 H 1.48495 * 109.47171 * 90.00148 * 25 23 21 27 27 H 1.48498 * 109.47189 * 210.00344 * 25 23 21 28 28 H 1.48501 * 109.46941 * 329.99823 * 25 23 21 29 29 H 1.09000 * 109.46695 * 60.00049 * 1 2 3 30 30 H 1.08994 * 109.47111 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47075 * 300.00519 * 1 2 3 32 32 H 1.08998 * 109.47460 * 185.00462 * 4 2 1 33 33 H 1.09005 * 109.47049 * 305.00112 * 4 2 1 34 34 H 1.08002 * 119.97979 * 0.02854 * 6 5 4 35 35 H 1.07995 * 119.99865 * 180.02562 * 7 6 5 36 36 H 1.08008 * 120.00297 * 179.97438 * 8 7 6 37 37 H 1.07992 * 120.00690 * 359.97438 * 11 5 4 38 38 H 0.96995 * 120.00449 * 359.97438 * 14 12 2 39 39 H 1.09004 * 109.47269 * 300.00228 * 15 14 12 40 40 H 1.09002 * 109.47383 * 59.99855 * 15 14 12 41 41 H 1.09000 * 109.47348 * 60.00558 * 18 16 15 42 42 H 1.09003 * 109.46542 * 179.97438 * 18 16 15 43 43 H 1.08995 * 109.47447 * 299.99912 * 18 16 15 44 44 H 1.08998 * 109.46829 * 93.84816 * 20 19 16 45 45 H 1.08998 * 109.46937 * 213.85089 * 20 19 16 46 46 H 1.08996 * 109.46759 * 333.84742 * 20 19 16 47 47 H 0.97001 * 119.99752 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 6 2.4818 1.0331 -2.9792 7 6 2.1167 1.7477 -4.1045 8 6 0.9106 1.4872 -4.7279 9 6 0.0690 0.5115 -4.2249 10 17 -1.4460 0.1842 -5.0068 11 6 0.4385 -0.2089 -3.1027 12 6 2.0323 -0.7105 1.2305 13 8 2.7295 -1.6965 1.1193 14 7 1.7066 -0.2499 2.4546 15 6 2.1954 -0.9402 3.6508 16 6 1.6847 -0.2194 4.9001 17 1 2.1188 0.7794 4.9460 18 6 2.0899 -1.0094 6.1461 19 7 0.2247 -0.1152 4.8412 20 6 -0.5941 -1.3282 4.7731 21 6 -0.3748 1.1158 4.8500 22 1 0.1783 1.9881 4.5342 23 6 -1.6935 1.2428 5.2646 24 7 -2.2958 0.2357 5.8607 25 14 -2.6133 2.8429 4.9766 26 1 -3.2935 2.7924 3.6576 27 1 -3.6241 3.0326 6.0478 28 1 -1.6534 3.9759 4.9956 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1263 -0.7996 -1.2055 33 1 1.6054 -1.7199 -1.2951 34 1 3.4240 1.2372 -2.4922 35 1 2.7736 2.5098 -4.4969 36 1 0.6252 2.0459 -5.6070 37 1 -0.2156 -0.9746 -2.7128 38 1 1.1494 0.5390 2.5436 39 1 1.8324 -1.9681 3.6509 40 1 3.2854 -0.9399 3.6507 41 1 3.1763 -1.0868 6.1899 42 1 1.7265 -0.4955 7.0361 43 1 1.6560 -2.0082 6.1001 44 1 -0.8975 -1.6187 5.7789 45 1 -1.4797 -1.1352 4.1678 46 1 -0.0140 -2.1332 4.3218 47 1 -3.2171 0.3245 6.1508 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485393022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:46 Heat of formation + Delta-G solvation = -15.567382 kcal Electronic energy + Delta-G solvation = -27119.667571 eV Core-core repulsion = 23328.217808 eV Total energy + Delta-G solvation = -3791.449762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.09523 -39.20560 -36.89306 -36.66411 -34.86862 -33.79287 -32.09547 -31.00946 -30.91615 -29.31294 -26.88481 -26.05009 -25.92545 -23.52060 -22.95445 -22.82217 -21.22594 -19.64901 -19.07817 -17.30213 -16.96767 -16.63784 -15.90950 -15.75057 -15.52403 -15.35539 -14.82900 -14.22009 -14.12197 -14.00243 -13.70612 -13.39994 -13.09806 -12.84798 -12.74398 -12.66769 -12.27438 -12.08091 -11.96372 -11.80833 -11.61856 -11.61155 -11.44729 -11.14262 -11.05354 -10.99240 -10.96618 -10.85443 -10.76753 -10.42446 -10.30265 -9.92863 -9.80735 -9.41542 -9.11385 -8.87470 -8.62137 -8.50173 -6.83172 -5.78521 -3.26043 0.90738 1.00725 1.89981 3.00100 3.32396 3.33023 3.38813 3.40876 3.68710 4.41781 4.49168 4.55737 4.78545 4.87031 4.94349 4.99557 5.14714 5.16951 5.34147 5.36093 5.40073 5.47816 5.59283 5.61578 5.71324 5.85840 5.89022 5.92071 5.96840 6.06505 6.09735 6.12696 6.17901 6.27162 6.32261 6.37188 6.42339 6.55588 6.74989 6.83648 6.88032 7.04329 7.36856 7.67930 7.76103 8.04207 8.32964 8.65032 9.17222 9.80106 10.29906 11.25819 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011226 B = 0.002914 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.665301 B = 9606.444614 C =11137.500674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 H 0.095 0.905 4 C -0.062 4.062 5 C -0.061 4.061 6 C -0.113 4.113 7 C -0.106 4.106 8 C -0.119 4.119 9 C -0.033 4.033 10 Cl -0.074 7.074 11 C -0.105 4.105 12 C 0.512 3.488 13 O -0.559 6.559 14 N -0.703 5.703 15 C 0.106 3.894 16 C 0.157 3.843 17 H 0.067 0.933 18 C -0.156 4.156 19 N -0.593 5.593 20 C 0.166 3.834 21 C -0.262 4.262 22 H 0.068 0.932 23 C 0.007 3.993 24 N -0.903 5.903 25 Si 0.902 3.098 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.410 0.590 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.041 0.959 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.026 0.974 45 H 0.042 0.958 46 H -0.003 1.003 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.932 1.425 -18.166 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.124 4.124 3 H 0.113 0.887 4 C -0.099 4.099 5 C -0.061 4.061 6 C -0.131 4.131 7 C -0.124 4.124 8 C -0.137 4.137 9 C -0.059 4.059 10 Cl -0.045 7.045 11 C -0.124 4.124 12 C 0.298 3.702 13 O -0.439 6.439 14 N -0.354 5.354 15 C -0.020 4.020 16 C 0.049 3.951 17 H 0.085 0.915 18 C -0.216 4.216 19 N -0.316 5.316 20 C 0.022 3.978 21 C -0.391 4.391 22 H 0.086 0.914 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.732 3.268 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.246 0.754 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.016 0.984 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.084 0.686 -18.206 19.932 hybrid contribution -1.147 1.201 -0.002 1.661 sum 6.937 1.887 -18.209 19.577 Atomic orbital electron populations 1.21880 0.92513 1.02982 1.03293 1.21229 0.98072 1.00606 0.92530 0.88682 1.20434 1.02294 0.98168 0.89042 1.19902 0.93489 0.96314 0.96409 1.21212 0.99966 0.95608 0.96286 1.21098 0.95966 0.99627 0.95733 1.21031 0.94251 0.97597 1.00862 1.20938 0.89001 0.99538 0.96439 1.98377 1.31027 1.94898 1.80225 1.21043 0.96937 1.00089 0.94300 1.20466 0.80245 0.84610 0.84873 1.90647 1.39253 1.26862 1.87132 1.45911 1.52327 1.32149 1.04996 1.21937 0.97356 0.97064 0.85617 1.20616 0.86412 0.97267 0.90840 0.91452 1.22185 0.98914 1.00837 0.99675 1.43968 0.98639 1.03465 1.85566 1.20713 0.92651 0.85422 0.99032 1.19193 0.95584 0.85953 1.38390 0.91396 1.25026 0.98573 0.97216 0.98423 1.70072 1.12275 1.30685 1.41699 0.86307 0.79792 0.83263 0.77453 1.21468 1.21781 1.20512 0.91614 0.92052 0.90980 0.89752 0.89981 0.85298 0.85154 0.85190 0.84770 0.75353 0.92185 0.92612 0.94014 0.92245 0.93179 0.95522 0.93887 0.98449 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.67 37.16 0.32 -1.54 16 2 C -0.10 -1.27 2.71 -91.77 -0.25 -1.52 16 3 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 4 C -0.06 -0.69 4.19 -27.89 -0.12 -0.81 16 5 C -0.06 -0.61 4.70 -104.63 -0.49 -1.10 16 6 C -0.11 -1.00 9.70 -39.58 -0.38 -1.38 16 7 C -0.11 -0.85 10.05 -39.59 -0.40 -1.25 16 8 C -0.12 -1.04 9.83 -39.55 -0.39 -1.43 16 9 C -0.03 -0.33 6.32 -39.50 -0.25 -0.58 16 10 Cl -0.07 -0.74 28.96 -51.86 -1.50 -2.24 16 11 C -0.11 -1.08 7.77 -39.54 -0.31 -1.39 16 12 C 0.51 8.15 7.15 -10.98 -0.08 8.07 16 13 O -0.56 -10.51 15.92 5.56 0.09 -10.42 16 14 N -0.70 -11.65 5.28 -60.29 -0.32 -11.97 16 15 C 0.11 1.84 4.93 -4.04 -0.02 1.82 16 16 C 0.16 2.96 2.87 -67.93 -0.19 2.76 16 17 H 0.07 1.26 7.86 -51.93 -0.41 0.85 16 18 C -0.16 -2.73 9.19 37.16 0.34 -2.39 16 19 N -0.59 -13.48 2.29 -173.48 -0.40 -13.87 16 20 C 0.17 3.92 8.00 59.85 0.48 4.40 16 21 C -0.26 -6.53 9.33 -15.06 -0.14 -6.67 16 22 H 0.07 1.63 7.82 -52.49 -0.41 1.22 16 23 C 0.01 0.18 5.12 -17.43 -0.09 0.09 16 24 N -0.90 -25.19 10.63 55.49 0.59 -24.60 16 25 Si 0.90 20.73 29.57 -169.99 -5.03 15.71 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H 0.06 0.74 6.28 -51.93 -0.33 0.42 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.00 7.57 -51.93 -0.39 0.61 16 32 H 0.08 0.96 7.90 -51.93 -0.41 0.55 16 33 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.13 1.33 8.05 -52.49 -0.42 0.91 16 38 H 0.41 6.88 7.31 -40.82 -0.30 6.58 16 39 H 0.06 1.13 6.86 -51.93 -0.36 0.77 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.89 7.67 -51.93 -0.40 0.49 16 44 H 0.03 0.69 7.43 -51.93 -0.39 0.30 16 45 H 0.04 1.10 7.20 -51.93 -0.37 0.72 16 46 H 0.00 -0.06 6.53 -51.93 -0.34 -0.40 16 47 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 394.26 15.07 5.94 5.94 Total: -1.00 -29.05 394.26 -10.05 -39.10 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.46 Total: 5.27 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -1.97 Total: -2.92 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.13 Total: -50.44 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.71 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.05 -10.05 -39.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485393022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.531 kcal (2) G-P(sol) polarization free energy of solvation -29.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds