Wall clock time and date at job start Tue Mar 31 2020 20:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47111 * 2 1 4 4 C 1.52998 * 109.47256 * 239.99812 * 2 1 3 5 5 C 1.50694 * 109.47124 * 65.00182 * 4 2 1 6 6 C 1.38265 * 119.99550 * 89.99757 * 5 4 2 7 7 C 1.38216 * 120.03089 * 180.02562 * 6 5 4 8 8 C 1.38238 * 120.00918 * 0.02562 * 7 6 5 9 9 C 1.38324 * 119.99017 * 0.02562 * 8 7 6 10 10 Cl 1.73604 * 120.01451 * 179.97438 * 9 8 7 11 11 C 1.38193 * 119.99278 * 269.72973 * 5 4 2 12 12 C 1.50702 * 109.46796 * 120.00174 * 2 1 3 13 13 O 1.21274 * 120.00319 * 120.00216 * 12 2 1 14 14 N 1.34783 * 119.99643 * 299.99658 * 12 2 1 15 15 C 1.46500 * 119.99670 * 180.02562 * 14 12 2 16 16 C 1.53006 * 109.47150 * 180.02562 * 15 14 12 17 17 H 1.08997 * 109.46705 * 294.99552 * 16 15 14 18 18 C 1.52998 * 109.46946 * 174.99817 * 16 15 14 19 19 N 1.46494 * 109.46961 * 54.99680 * 16 15 14 20 20 C 1.46508 * 119.99868 * 60.00502 * 19 16 15 21 21 C 1.36932 * 120.00288 * 240.00096 * 19 16 15 22 22 H 1.08001 * 119.99846 * 22.82539 * 21 19 16 23 23 C 1.38815 * 120.00462 * 202.82239 * 21 19 16 24 24 N 1.31623 * 119.99617 * 11.58773 * 23 21 19 25 25 Si 1.86796 * 120.00324 * 191.58489 * 23 21 19 26 26 H 1.48495 * 109.47171 * 90.00148 * 25 23 21 27 27 H 1.48498 * 109.47189 * 210.00344 * 25 23 21 28 28 H 1.48501 * 109.46941 * 329.99823 * 25 23 21 29 29 H 1.09000 * 109.46695 * 60.00049 * 1 2 3 30 30 H 1.08994 * 109.47111 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47075 * 300.00519 * 1 2 3 32 32 H 1.08998 * 109.47460 * 185.00462 * 4 2 1 33 33 H 1.09005 * 109.47049 * 305.00112 * 4 2 1 34 34 H 1.08002 * 119.97979 * 0.02854 * 6 5 4 35 35 H 1.07995 * 119.99865 * 180.02562 * 7 6 5 36 36 H 1.08008 * 120.00297 * 179.97438 * 8 7 6 37 37 H 1.07992 * 120.00690 * 359.97438 * 11 5 4 38 38 H 0.96995 * 120.00449 * 359.97438 * 14 12 2 39 39 H 1.09004 * 109.47269 * 300.00228 * 15 14 12 40 40 H 1.09002 * 109.47383 * 59.99855 * 15 14 12 41 41 H 1.09000 * 109.47348 * 60.00558 * 18 16 15 42 42 H 1.09003 * 109.46542 * 179.97438 * 18 16 15 43 43 H 1.08995 * 109.47447 * 299.99912 * 18 16 15 44 44 H 1.08998 * 109.46829 * 93.84816 * 20 19 16 45 45 H 1.08998 * 109.46937 * 213.85089 * 20 19 16 46 46 H 1.08996 * 109.46759 * 333.84742 * 20 19 16 47 47 H 0.97001 * 119.99752 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 6 2.4818 1.0331 -2.9792 7 6 2.1167 1.7477 -4.1045 8 6 0.9106 1.4872 -4.7279 9 6 0.0690 0.5115 -4.2249 10 17 -1.4460 0.1842 -5.0068 11 6 0.4385 -0.2089 -3.1027 12 6 2.0323 -0.7105 1.2305 13 8 2.7295 -1.6965 1.1193 14 7 1.7066 -0.2499 2.4546 15 6 2.1954 -0.9402 3.6508 16 6 1.6847 -0.2194 4.9001 17 1 2.1188 0.7794 4.9460 18 6 2.0899 -1.0094 6.1461 19 7 0.2247 -0.1152 4.8412 20 6 -0.5941 -1.3282 4.7731 21 6 -0.3748 1.1158 4.8500 22 1 0.1783 1.9881 4.5342 23 6 -1.6935 1.2428 5.2646 24 7 -2.2958 0.2357 5.8607 25 14 -2.6133 2.8429 4.9766 26 1 -3.2935 2.7924 3.6576 27 1 -3.6241 3.0326 6.0478 28 1 -1.6534 3.9759 4.9956 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1263 -0.7996 -1.2055 33 1 1.6054 -1.7199 -1.2951 34 1 3.4240 1.2372 -2.4922 35 1 2.7736 2.5098 -4.4969 36 1 0.6252 2.0459 -5.6070 37 1 -0.2156 -0.9746 -2.7128 38 1 1.1494 0.5390 2.5436 39 1 1.8324 -1.9681 3.6509 40 1 3.2854 -0.9399 3.6507 41 1 3.1763 -1.0868 6.1899 42 1 1.7265 -0.4955 7.0361 43 1 1.6560 -2.0082 6.1001 44 1 -0.8975 -1.6187 5.7789 45 1 -1.4797 -1.1352 4.1678 46 1 -0.0140 -2.1332 4.3218 47 1 -3.2171 0.3245 6.1508 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485393022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:45 Heat of formation + Delta-G solvation = -29.597487 kcal Electronic energy + Delta-G solvation = -27120.275962 eV Core-core repulsion = 23328.217808 eV Total energy + Delta-G solvation = -3792.058153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.13333 -40.19296 -38.43979 -37.49383 -35.85972 -35.38734 -33.70973 -31.89459 -31.68223 -31.03197 -28.00670 -27.78288 -27.27133 -25.02952 -24.26826 -23.55270 -22.10501 -21.10356 -20.44913 -18.83980 -18.21651 -17.62411 -17.16417 -16.98187 -16.69483 -16.32714 -16.14920 -15.74794 -15.34328 -14.98694 -14.65798 -14.59947 -14.43617 -14.26375 -14.03324 -13.76538 -13.70149 -13.39074 -13.10723 -13.04130 -12.83105 -12.66275 -12.62722 -12.52854 -12.39408 -12.34544 -12.26463 -12.08124 -12.00107 -11.92298 -11.77318 -11.73110 -11.48919 -10.70936 -10.59176 -9.89188 -9.82343 -9.60365 -8.75817 -7.77361 -5.25408 0.20590 0.31277 1.17317 1.50510 1.52098 1.59291 1.72480 2.36688 2.54170 2.70278 3.38408 3.60009 3.68323 3.83219 3.89546 4.01138 4.05086 4.10343 4.21656 4.35168 4.37390 4.43874 4.46945 4.60815 4.62506 4.74654 4.77542 4.82812 4.84731 4.91128 4.95400 5.02866 5.05606 5.18817 5.24982 5.25316 5.30041 5.39004 5.41414 5.43920 5.60281 5.63930 5.70833 5.76368 5.88565 6.37074 6.71442 7.19459 7.34642 7.90904 8.36937 9.26321 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011226 B = 0.002914 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.665301 B = 9606.444614 C =11137.500674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.116 0.884 4 C -0.053 4.053 5 C -0.069 4.069 6 C -0.114 4.114 7 C -0.102 4.102 8 C -0.120 4.120 9 C -0.046 4.046 10 Cl -0.080 7.080 11 C -0.117 4.117 12 C 0.512 3.488 13 O -0.588 6.588 14 N -0.706 5.706 15 C 0.116 3.884 16 C 0.157 3.843 17 H 0.075 0.925 18 C -0.149 4.149 19 N -0.602 5.602 20 C 0.188 3.812 21 C -0.254 4.254 22 H 0.081 0.919 23 C -0.050 4.050 24 N -0.939 5.939 25 Si 0.961 3.039 26 H -0.288 1.288 27 H -0.305 1.305 28 H -0.265 1.265 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.146 0.854 35 H 0.159 0.841 36 H 0.146 0.854 37 H 0.129 0.871 38 H 0.410 0.590 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.040 0.960 43 H 0.042 0.958 44 H -0.002 1.002 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.778 3.191 -19.703 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.134 0.866 4 C -0.091 4.091 5 C -0.069 4.069 6 C -0.132 4.132 7 C -0.120 4.120 8 C -0.139 4.139 9 C -0.073 4.073 10 Cl -0.051 7.051 11 C -0.135 4.135 12 C 0.299 3.701 13 O -0.470 6.470 14 N -0.356 5.356 15 C -0.010 4.010 16 C 0.049 3.951 17 H 0.093 0.907 18 C -0.209 4.209 19 N -0.325 5.325 20 C 0.042 3.958 21 C -0.384 4.384 22 H 0.099 0.901 23 C -0.245 4.245 24 N -0.586 5.586 25 Si 0.791 3.209 26 H -0.215 1.215 27 H -0.232 1.232 28 H -0.189 1.189 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.164 0.836 35 H 0.177 0.823 36 H 0.164 0.836 37 H 0.147 0.853 38 H 0.246 0.754 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.017 0.983 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.969 2.468 -19.758 22.267 hybrid contribution -1.623 0.631 0.437 1.796 sum 8.346 3.099 -19.321 21.273 Atomic orbital electron populations 1.21810 0.92668 1.02327 1.03187 1.21211 0.97663 1.01332 0.91210 0.86608 1.20304 1.02033 0.97621 0.89125 1.19786 0.93861 0.97039 0.96226 1.21464 1.00283 0.94941 0.96494 1.21434 0.95852 0.99663 0.95030 1.21322 0.94239 0.97058 1.01262 1.21077 0.89219 1.00274 0.96688 1.98372 1.31472 1.95002 1.80271 1.21065 0.97252 1.00404 0.94826 1.21043 0.79429 0.84179 0.85449 1.90633 1.40619 1.28195 1.87530 1.45954 1.52362 1.32075 1.05175 1.21747 0.98165 0.95869 0.85198 1.20784 0.83913 0.98245 0.92121 0.90693 1.22077 1.01115 0.99730 0.97943 1.44103 1.00321 1.02545 1.85514 1.20340 0.92119 0.86401 0.96898 1.19583 0.95582 0.86962 1.36303 0.90108 1.25718 0.99741 0.99848 0.99179 1.70244 1.12012 1.32591 1.43767 0.85348 0.78454 0.80585 0.76538 1.21513 1.23202 1.18940 0.90240 0.93050 0.92420 0.89775 0.91283 0.83609 0.82318 0.83578 0.85280 0.75380 0.93801 0.90897 0.90515 0.94049 0.93932 0.98349 0.96602 0.96591 0.94655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.67 71.98 0.62 -2.83 16 2 C -0.09 -2.16 2.71 -11.54 -0.03 -2.19 16 3 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.05 -1.13 4.19 29.85 0.12 -1.00 16 5 C -0.07 -1.27 4.70 -19.87 -0.09 -1.36 16 6 C -0.11 -1.70 9.70 22.27 0.22 -1.48 16 7 C -0.10 -1.31 10.05 22.26 0.22 -1.08 16 8 C -0.12 -1.81 9.83 22.29 0.22 -1.59 16 9 C -0.05 -0.86 6.32 22.32 0.14 -0.72 16 10 Cl -0.08 -1.52 28.96 -2.72 -0.08 -1.60 16 11 C -0.12 -2.29 7.77 22.29 0.17 -2.12 16 12 C 0.51 15.70 7.15 87.66 0.63 16.32 16 13 O -0.59 -21.61 15.92 -3.01 -0.05 -21.66 16 14 N -0.71 -22.45 5.28 -463.04 -2.44 -24.90 16 15 C 0.12 3.84 4.93 86.38 0.43 4.27 16 16 C 0.16 5.65 2.87 44.99 0.13 5.78 16 17 H 0.07 2.62 7.86 -2.39 -0.02 2.60 16 18 C -0.15 -4.98 9.19 71.98 0.66 -4.32 16 19 N -0.60 -27.12 2.29 -702.78 -1.61 -28.73 16 20 C 0.19 9.00 8.00 127.77 1.02 10.02 16 21 C -0.25 -12.51 9.33 84.04 0.78 -11.73 16 22 H 0.08 3.73 7.82 -2.91 -0.02 3.70 16 23 C -0.05 -2.61 5.12 84.86 0.43 -2.18 16 24 N -0.94 -53.69 10.63 21.65 0.23 -53.46 16 25 Si 0.96 42.69 29.57 68.60 2.03 44.71 16 26 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 28 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 29 H 0.08 1.71 6.28 -2.39 -0.01 1.70 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.56 7.57 -2.39 -0.02 1.54 16 32 H 0.08 1.79 7.90 -2.39 -0.02 1.77 16 33 H 0.07 1.63 8.08 -2.38 -0.02 1.61 16 34 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 35 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 36 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.13 2.56 8.05 -2.91 -0.02 2.54 16 38 H 0.41 13.19 7.31 -92.71 -0.68 12.51 16 39 H 0.04 1.61 6.86 -2.39 -0.02 1.59 16 40 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.04 1.47 7.67 -2.39 -0.02 1.45 16 44 H 0.00 -0.10 7.43 -2.39 -0.02 -0.11 16 45 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 46 H 0.02 0.68 6.53 -2.39 -0.02 0.67 16 47 H 0.24 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -62.57 394.26 4.05 -58.52 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.28 Total: 23.32 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 5.68 Total: 3.78 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -3.82 Total: -107.08 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.05 Total: -21.66 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -62.57 4.05 -58.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485393022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.926 kcal (2) G-P(sol) polarization free energy of solvation -62.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds