Wall clock time and date at job start Tue Mar 31 2020 21:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47161 * 2 1 4 4 C 1.52998 * 109.47270 * 239.99887 * 2 1 3 5 5 N 1.46495 * 109.47284 * 184.99935 * 4 2 1 6 6 C 1.46495 * 120.00245 * 269.99727 * 5 4 2 7 7 C 1.34780 * 119.99762 * 89.99733 * 5 4 2 8 8 O 1.21280 * 120.00131 * 7.01251 * 7 5 4 9 9 C 1.50696 * 119.99886 * 187.00304 * 7 5 4 10 10 C 1.52997 * 109.54721 * 302.78072 * 9 7 5 11 11 F 1.39905 * 109.47101 * 345.36475 * 10 9 7 12 12 F 1.39903 * 109.47629 * 105.36577 * 10 9 7 13 13 F 1.39908 * 109.47192 * 225.37129 * 10 9 7 14 14 C 1.53181 * 109.54449 * 182.60038 * 9 7 5 15 15 C 1.53090 * 109.16299 * 297.11474 * 14 9 7 16 16 O 1.42911 * 109.42575 * 302.38878 * 15 14 9 17 17 C 1.42921 * 114.08692 * 61.14922 * 16 15 14 18 18 C 1.53093 * 109.41970 * 298.85300 * 17 16 15 19 19 N 1.46499 * 109.47030 * 119.99670 * 2 1 3 20 20 C 1.36936 * 120.00227 * 274.99953 * 19 2 1 21 21 H 1.08002 * 119.99652 * 359.97438 * 20 19 2 22 22 C 1.38807 * 120.00049 * 179.97438 * 20 19 2 23 23 N 1.31615 * 119.99965 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00094 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46815 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46820 * 120.00396 * 24 22 20 27 27 H 1.48496 * 109.47487 * 240.00839 * 24 22 20 28 28 H 1.08994 * 109.47032 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46789 * 300.00253 * 1 2 3 30 30 H 1.09002 * 109.46852 * 60.00278 * 1 2 3 31 31 H 1.08999 * 109.47028 * 64.99996 * 4 2 1 32 32 H 1.08998 * 109.46922 * 305.00196 * 4 2 1 33 33 H 1.09001 * 109.47279 * 245.87409 * 6 5 4 34 34 H 1.09000 * 109.46894 * 5.87587 * 6 5 4 35 35 H 1.09010 * 109.47199 * 125.87177 * 6 5 4 36 36 H 1.09001 * 109.51902 * 177.21240 * 14 9 7 37 37 H 1.08995 * 109.57236 * 57.04942 * 14 9 7 38 38 H 1.09008 * 109.48203 * 62.37145 * 15 14 9 39 39 H 1.08994 * 109.48091 * 182.39850 * 15 14 9 40 40 H 1.08998 * 109.47695 * 178.87085 * 17 16 15 41 41 H 1.09004 * 109.48673 * 58.84136 * 17 16 15 42 42 H 1.08999 * 109.52247 * 297.70304 * 18 17 16 43 43 H 1.09000 * 109.52203 * 177.51520 * 18 17 16 44 44 H 0.97003 * 119.99907 * 94.99994 * 19 2 1 45 45 H 0.97008 * 120.00212 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2340 -1.7613 7 6 4.0757 -1.8987 -0.6114 8 8 3.3923 -2.8344 -0.2534 9 6 5.5686 -1.9350 -0.4091 10 6 6.2723 -1.7565 -1.7559 11 9 5.3515 -1.9469 -2.7919 12 9 6.8046 -0.4652 -1.8365 13 9 7.3041 -2.6944 -1.8709 14 6 5.9700 -3.2799 0.2046 15 6 5.3223 -3.4157 1.5850 16 8 5.7259 -2.3202 2.4093 17 6 5.3361 -1.0394 1.9091 18 6 5.9844 -0.8081 0.5416 19 7 2.0184 -0.6905 1.1962 20 6 2.1492 -0.0074 2.3758 21 1 1.8927 1.0406 2.4241 22 6 2.6113 -0.6618 3.5093 23 7 2.9243 -1.9389 3.4502 24 14 2.7904 0.2703 5.1182 25 1 2.3765 1.6827 4.9207 26 1 1.9293 -0.3575 6.1524 27 1 4.2073 0.2266 5.5606 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7517 -0.1583 -2.1369 32 1 1.6054 -1.7198 -1.2951 33 1 4.8877 -0.1586 -2.6144 34 1 3.7008 1.0588 -2.0875 35 1 5.0353 0.5907 -1.0065 36 1 7.0545 -3.3252 0.3050 37 1 5.6295 -4.0910 -0.4389 38 1 4.2374 -3.4108 1.4796 39 1 5.6387 -4.3521 2.0444 40 1 5.6626 -0.2639 2.6019 41 1 4.2513 -1.0033 1.8079 42 1 7.0691 -0.8036 0.6488 43 1 5.6532 0.1491 0.1387 44 1 2.2490 -1.6317 1.1527 45 1 3.2477 -2.3962 4.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485878372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:43 Heat of formation + Delta-G solvation = -201.271074 kcal Electronic energy + Delta-G solvation = -34837.894583 eV Core-core repulsion = 30055.826199 eV Total energy + Delta-G solvation = -4782.068384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.50163 -48.87214 -48.78722 -41.90053 -39.22066 -37.64151 -36.25315 -35.09038 -33.81177 -31.92666 -30.45408 -28.70933 -28.36681 -26.92105 -25.59351 -24.57223 -24.40386 -22.75728 -21.33050 -20.09894 -19.64339 -19.51467 -19.30832 -18.93989 -17.37214 -17.28315 -16.96521 -16.83019 -16.47507 -15.90267 -15.64937 -15.55942 -15.50433 -15.39009 -15.26687 -15.15314 -15.00610 -14.90674 -14.55499 -14.29497 -14.04285 -13.79704 -13.66638 -13.28924 -13.25186 -13.05050 -12.93216 -12.90276 -12.76921 -12.58553 -12.40322 -12.06403 -12.00785 -11.81386 -11.67998 -11.49737 -11.41866 -10.80657 -10.64322 -9.95165 -9.49420 -8.78462 -7.71180 -4.98766 1.20376 1.47920 1.51922 1.58072 1.71632 1.95315 2.54600 2.64921 2.68904 2.83807 3.22524 3.47924 3.55293 3.58441 3.61976 4.01037 4.04163 4.11720 4.19566 4.37339 4.39922 4.46268 4.56854 4.59392 4.64506 4.68335 4.71279 4.78280 4.82571 4.93456 5.03707 5.13599 5.16778 5.32209 5.36615 5.51953 5.65492 5.71815 5.84031 6.34959 6.45774 6.58517 7.13702 7.55292 8.31438 8.58805 9.45091 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.013266 B = 0.006597 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.107094 B = 4243.106684 C = 5353.725328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.146 3.854 3 H 0.052 0.948 4 C 0.113 3.887 5 N -0.596 5.596 6 C 0.032 3.968 7 C 0.535 3.465 8 O -0.541 6.541 9 C -0.122 4.122 10 C 0.472 3.528 11 F -0.173 7.173 12 F -0.163 7.163 13 F -0.170 7.170 14 C -0.124 4.124 15 C 0.060 3.940 16 O -0.389 6.389 17 C 0.034 3.966 18 C -0.144 4.144 19 N -0.732 5.732 20 C -0.240 4.240 21 H 0.065 0.935 22 C -0.044 4.044 23 N -0.920 5.920 24 Si 0.936 3.064 25 H -0.274 1.274 26 H -0.306 1.306 27 H -0.299 1.299 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.121 0.879 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.383 0.617 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 3.627 -14.823 16.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 H 0.070 0.930 4 C -0.010 4.010 5 N -0.327 5.327 6 C -0.110 4.110 7 C 0.321 3.679 8 O -0.418 6.418 9 C -0.127 4.127 10 C 0.417 3.583 11 F -0.154 7.154 12 F -0.145 7.145 13 F -0.152 7.152 14 C -0.162 4.162 15 C -0.017 4.017 16 O -0.307 6.307 17 C -0.043 4.043 18 C -0.181 4.181 19 N -0.376 5.376 20 C -0.373 4.373 21 H 0.083 0.917 22 C -0.240 4.240 23 N -0.569 5.569 24 Si 0.768 3.232 25 H -0.199 1.199 26 H -0.234 1.234 27 H -0.227 1.227 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.137 0.863 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.139 0.861 42 H 0.115 0.885 43 H 0.126 0.874 44 H 0.218 0.782 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.668 3.260 -14.407 16.206 hybrid contribution 0.018 0.082 1.075 1.078 sum 6.686 3.342 -13.332 15.284 Atomic orbital electron populations 1.22239 0.97642 1.00467 1.01011 1.20938 0.92910 0.95749 0.86751 0.92979 1.21942 0.78515 1.01733 0.98838 1.47581 1.07438 1.20645 1.57018 1.23047 0.97136 0.91422 0.99362 1.19641 0.88352 0.82700 0.77178 1.90658 1.64373 1.36945 1.49857 1.22306 0.94182 1.03048 0.93115 1.19910 0.77406 0.74350 0.86623 1.93139 1.65982 1.94574 1.61750 1.93187 1.86973 1.37734 1.96571 1.93186 1.60143 1.65407 1.96431 1.22134 1.02616 0.93100 0.98345 1.22631 1.00566 0.89723 0.88812 1.87760 1.78666 1.14780 1.49517 1.23100 1.04533 0.84486 0.92173 1.22621 1.02966 0.96895 0.95662 1.42829 1.78117 1.10988 1.05686 1.19309 1.35973 0.93619 0.88375 0.91736 1.25057 1.03394 0.96429 0.99106 1.69752 1.50310 1.08682 1.28112 0.85655 0.76357 0.78407 0.82761 1.19885 1.23449 1.22724 0.94687 0.94523 0.90578 0.86336 0.91880 0.90300 0.87463 0.90637 0.88095 0.89540 0.91617 0.89092 0.91526 0.86092 0.88550 0.87419 0.78186 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 9.49 71.98 0.68 -4.29 16 2 C 0.15 5.18 3.20 44.99 0.14 5.32 16 3 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 4 C 0.11 3.34 5.11 86.38 0.44 3.78 16 5 N -0.60 -17.95 2.56 -846.78 -2.17 -20.12 16 6 C 0.03 0.70 8.32 127.77 1.06 1.77 16 7 C 0.53 19.06 3.39 87.66 0.30 19.35 16 8 O -0.54 -23.48 11.50 -3.03 -0.03 -23.52 16 9 C -0.12 -3.76 0.50 -52.81 -0.03 -3.79 16 10 C 0.47 12.03 2.62 71.98 0.19 12.22 16 11 F -0.17 -4.48 13.35 44.97 0.60 -3.88 16 12 F -0.16 -3.60 13.08 44.97 0.59 -3.02 16 13 F -0.17 -4.21 15.54 44.97 0.70 -3.51 16 14 C -0.12 -3.95 3.79 30.68 0.12 -3.84 16 15 C 0.06 2.37 6.55 72.01 0.47 2.84 16 16 O -0.39 -17.04 10.55 -148.98 -1.57 -18.61 16 17 C 0.03 1.41 5.81 72.01 0.42 1.82 16 18 C -0.14 -4.52 3.89 30.69 0.12 -4.40 16 19 N -0.73 -33.91 3.61 -322.94 -1.17 -35.08 16 20 C -0.24 -12.28 8.98 84.03 0.75 -11.53 16 21 H 0.06 3.26 7.83 -2.91 -0.02 3.24 16 22 C -0.04 -2.37 4.39 84.86 0.37 -1.99 16 23 N -0.92 -52.01 11.33 21.65 0.25 -51.76 16 24 Si 0.94 45.05 29.55 68.60 2.03 47.08 16 25 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.31 -15.28 7.11 99.48 0.71 -14.57 16 27 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.12 2.45 7.97 -2.39 -0.02 2.43 16 32 H 0.06 2.15 7.34 -2.39 -0.02 2.13 16 33 H 0.08 1.61 4.35 -2.39 -0.01 1.60 16 34 H 0.11 1.80 7.85 -2.39 -0.02 1.78 16 35 H 0.08 1.73 3.83 -2.38 -0.01 1.72 16 36 H 0.10 2.78 7.48 -2.39 -0.02 2.76 16 37 H 0.09 2.65 8.06 -2.39 -0.02 2.63 16 38 H 0.07 3.15 5.71 -2.38 -0.01 3.14 16 39 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.12 5.62 2.53 -2.38 -0.01 5.61 16 42 H 0.10 2.64 8.11 -2.39 -0.02 2.62 16 43 H 0.11 3.05 4.46 -2.39 -0.01 3.04 16 44 H 0.38 19.73 5.04 -92.71 -0.47 19.27 16 45 H 0.24 14.12 8.31 -92.70 -0.77 13.35 16 Total: -1.00 -62.92 336.09 4.84 -58.08 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: 0.58 Total: 37.10 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 5.04 Total: 17.25 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -3.09 Total: -106.96 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -1.61 Total: -42.13 kcal Atomic # 9 Polarization: -12.30 SS G_CDS: 1.89 Total: -10.41 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -62.92 4.84 -58.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485878372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.194 kcal (2) G-P(sol) polarization free energy of solvation -62.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds