Wall clock time and date at job start Tue Mar 31 2020 21:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47286 * 2 1 4 4 C 1.50699 * 109.46955 * 120.00110 * 2 1 3 5 5 O 1.21281 * 120.00286 * 91.36750 * 4 2 1 6 6 N 1.34781 * 119.99561 * 271.64026 * 4 2 1 7 7 C 1.46925 * 120.63308 * 4.29491 * 6 4 2 8 8 C 1.53626 * 108.54413 * 126.36192 * 7 6 4 9 9 C 1.53046 * 109.23626 * 54.85699 * 8 7 6 10 10 C 1.53036 * 109.54192 * 298.50576 * 9 8 7 11 11 H 1.09001 * 109.50113 * 301.41939 * 10 9 8 12 12 N 1.46497 * 109.52675 * 181.33329 * 10 9 8 13 13 C 1.36936 * 119.99887 * 300.15103 * 12 10 9 14 14 H 1.07995 * 120.00272 * 318.76105 * 13 12 10 15 15 C 1.38809 * 120.00065 * 138.76753 * 13 12 10 16 16 N 1.31624 * 119.99842 * 341.27769 * 15 13 12 17 17 Si 1.86800 * 120.00508 * 161.27773 * 15 13 12 18 18 H 1.48504 * 109.46862 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47501 * 119.99754 * 17 15 13 20 20 H 1.48500 * 109.47406 * 240.00236 * 17 15 13 21 21 C 1.46499 * 119.99732 * 120.14819 * 12 10 9 22 22 C 1.52997 * 109.46920 * 84.44516 * 21 12 10 23 23 O 1.42900 * 109.47565 * 64.99913 * 22 21 12 24 24 C 1.46927 * 120.62584 * 184.56794 * 6 4 2 25 25 C 1.52999 * 109.46845 * 240.00011 * 2 1 3 26 26 F 1.39900 * 109.47222 * 299.99944 * 25 2 1 27 27 F 1.39900 * 109.47502 * 60.00348 * 25 2 1 28 28 F 1.39902 * 109.46712 * 180.02562 * 25 2 1 29 29 H 1.09001 * 109.46918 * 184.10938 * 1 2 3 30 30 H 1.08997 * 109.47038 * 304.10984 * 1 2 3 31 31 H 1.09000 * 109.46727 * 64.11286 * 1 2 3 32 32 H 1.08998 * 109.58723 * 246.19727 * 7 6 4 33 33 H 1.09005 * 109.58539 * 6.62365 * 7 6 4 34 34 H 1.08994 * 109.63758 * 294.86920 * 8 7 6 35 35 H 1.08999 * 109.45912 * 174.73699 * 8 7 6 36 36 H 1.09005 * 109.45780 * 178.48966 * 9 8 7 37 37 H 1.09001 * 109.45920 * 58.53668 * 9 8 7 38 38 H 0.97005 * 120.00052 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.47045 * 204.44019 * 21 12 10 40 40 H 1.08999 * 109.47119 * 324.44082 * 21 12 10 41 41 H 1.09007 * 109.46793 * 184.99477 * 22 21 12 42 42 H 1.09002 * 109.47354 * 304.99137 * 22 21 12 43 43 H 0.96694 * 114.00013 * 179.97438 * 23 22 21 44 44 H 1.08999 * 109.58912 * 353.37661 * 24 6 4 45 45 H 1.08997 * 109.58358 * 113.80425 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.2581 -1.9015 1.1934 6 7 2.2254 -0.0232 2.3737 7 6 1.8625 1.3977 2.4634 8 6 0.9362 1.5899 3.6738 9 6 1.6207 1.0361 4.9256 10 6 1.8766 -0.4623 4.7486 11 1 0.9310 -0.9744 4.5708 12 7 2.5030 -0.9985 5.9595 13 6 3.7070 -0.5034 6.3843 14 1 4.4851 -0.2871 5.6674 15 6 3.9274 -0.2796 7.7364 16 7 2.9070 -0.1827 8.5623 17 14 5.6718 -0.1160 8.3840 18 1 6.6325 -0.2631 7.2611 19 1 5.8438 1.2188 9.0115 20 1 5.9263 -1.1743 9.3941 21 6 1.8412 -2.0643 6.7160 22 6 2.1890 -3.4199 6.0980 23 8 3.5891 -3.6654 6.2449 24 6 2.8084 -0.6792 3.5520 25 6 2.0400 -0.7213 -1.2493 26 9 1.5736 -2.0402 -1.2492 27 9 1.5737 -0.0618 -2.3916 28 9 3.4390 -0.7217 -1.2489 29 1 -0.3633 -1.0250 0.0736 30 1 -0.3633 0.5763 0.8509 31 1 -0.3633 0.4487 -0.9246 32 1 2.7636 1.9977 2.5905 33 1 1.3446 1.7007 1.5534 34 1 -0.0005 1.0585 3.5062 35 1 0.7327 2.6520 3.8102 36 1 0.9778 1.1948 5.7914 37 1 2.5692 1.5510 5.0787 38 1 3.0610 -0.0260 9.5071 39 1 2.1805 -2.0393 7.7516 40 1 0.7617 -1.9164 6.6837 41 1 1.6275 -4.2050 6.6045 42 1 1.9304 -3.4136 5.0391 43 1 3.8814 -4.5096 5.8751 44 1 2.9147 -1.7470 3.3606 45 1 3.7850 -0.2452 3.7661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489163949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:39 Heat of formation + Delta-G solvation = -215.812493 kcal Electronic energy + Delta-G solvation = -32005.147268 eV Core-core repulsion = 27222.448321 eV Total energy + Delta-G solvation = -4782.698947 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.18358 -47.72530 -47.55867 -40.23705 -37.64195 -36.20790 -34.79758 -34.07141 -32.13204 -31.32717 -29.67424 -27.32032 -26.71946 -25.45096 -24.23359 -23.05075 -22.19260 -20.92227 -19.90646 -19.15026 -18.68225 -18.39631 -17.40743 -17.07264 -16.54890 -16.34400 -15.46435 -15.14775 -14.76370 -14.56115 -14.48471 -14.38402 -14.12968 -14.06459 -13.88587 -13.77413 -13.71655 -13.64794 -13.37049 -13.10592 -12.82981 -12.79316 -12.60204 -12.28793 -12.16904 -12.07582 -11.61669 -11.34050 -11.02417 -10.98942 -10.81978 -10.72424 -10.39191 -10.28013 -9.95351 -9.89075 -9.72419 -9.56832 -9.08101 -8.55789 -8.31647 -6.50172 -5.75581 -3.34789 2.30664 2.61857 3.00721 3.40529 3.49319 3.53008 3.55507 3.88622 3.90546 4.41555 4.52558 4.59051 4.67929 4.88809 5.13537 5.18684 5.23042 5.25317 5.33144 5.35225 5.49843 5.62384 5.70949 5.79950 5.90554 5.97039 6.11602 6.17263 6.25737 6.32230 6.44898 6.54729 6.63732 6.72463 6.79858 7.00818 7.18396 7.47879 7.60743 7.87137 8.11288 8.47675 8.63287 9.21405 9.83178 10.41365 11.27108 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017074 B = 0.003428 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.523857 B = 8164.938400 C = 8499.335159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.165 4.165 3 H 0.132 0.868 4 C 0.518 3.482 5 O -0.526 6.526 6 N -0.595 5.595 7 C 0.101 3.899 8 C -0.132 4.132 9 C -0.121 4.121 10 C 0.168 3.832 11 H 0.048 0.952 12 N -0.568 5.568 13 C -0.241 4.241 14 H 0.055 0.945 15 C 0.022 3.978 16 N -0.892 5.892 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.293 1.293 20 H -0.289 1.289 21 C 0.151 3.849 22 C 0.057 3.943 23 O -0.545 6.545 24 C 0.103 3.897 25 C 0.470 3.530 26 F -0.166 7.166 27 F -0.183 7.183 28 F -0.179 7.179 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.252 0.748 39 H 0.097 0.903 40 H 0.037 0.963 41 H 0.020 0.980 42 H 0.024 0.976 43 H 0.351 0.649 44 H 0.085 0.915 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.894 3.126 -15.948 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 H 0.150 0.850 4 C 0.303 3.697 5 O -0.402 6.402 6 N -0.328 5.328 7 C -0.022 4.022 8 C -0.171 4.171 9 C -0.161 4.161 10 C 0.059 3.941 11 H 0.066 0.934 12 N -0.287 5.287 13 C -0.371 4.371 14 H 0.072 0.928 15 C -0.178 4.178 16 N -0.534 5.534 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.220 1.220 20 H -0.216 1.216 21 C 0.025 3.975 22 C -0.023 4.023 23 O -0.347 6.347 24 C -0.020 4.020 25 C 0.416 3.584 26 F -0.147 7.147 27 F -0.165 7.165 28 F -0.160 7.160 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.115 0.885 40 H 0.055 0.945 41 H 0.038 0.962 42 H 0.042 0.958 43 H 0.194 0.806 44 H 0.103 0.897 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.786 3.093 -15.466 17.170 hybrid contribution 0.993 -0.490 -0.053 1.108 sum -5.793 2.603 -15.519 16.768 Atomic orbital electron populations 1.21811 0.89066 1.04990 1.04600 1.22679 1.01630 1.02695 0.91746 0.84979 1.19644 0.78810 0.87286 0.83979 1.90790 1.51287 1.14124 1.83980 1.48183 1.61329 1.11158 1.12142 1.21991 0.99580 0.81363 0.99238 1.22046 0.98310 1.01141 0.95625 1.21918 1.01071 0.97803 0.95261 1.20603 0.93360 0.92693 0.87418 0.93377 1.43595 1.21943 1.37804 1.25352 1.18752 0.89334 1.38157 0.90848 0.92769 1.25153 0.96622 0.98344 0.97723 1.69999 1.28976 1.51019 1.03417 0.86346 0.85347 0.76822 0.78824 1.20183 1.22047 1.21558 1.20939 0.93685 0.83608 0.99292 1.23104 0.81764 0.99482 0.97986 1.86811 1.24112 1.40811 1.82938 1.22438 0.97951 0.98526 0.83106 1.19866 0.75713 0.78245 0.84598 1.93236 1.88155 1.36698 1.96594 1.93171 1.88549 1.80927 1.53826 1.93210 1.29685 1.96434 1.96712 0.90350 0.89573 0.90087 0.90795 0.90583 0.92143 0.91180 0.91633 0.91140 0.93819 0.88492 0.94505 0.96195 0.95767 0.80581 0.89680 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.78 37.16 0.33 -0.88 16 2 C -0.16 -1.75 1.85 -91.77 -0.17 -1.92 16 3 H 0.13 1.03 6.51 -51.93 -0.34 0.69 16 4 C 0.52 7.70 6.50 -10.98 -0.07 7.63 16 5 O -0.53 -9.94 14.68 5.56 0.08 -9.86 16 6 N -0.60 -8.73 2.97 -172.50 -0.51 -9.25 16 7 C 0.10 1.13 6.16 -3.49 -0.02 1.10 16 8 C -0.13 -1.62 6.10 -26.38 -0.16 -1.79 16 9 C -0.12 -2.12 5.11 -26.69 -0.14 -2.25 16 10 C 0.17 3.24 2.78 -67.81 -0.19 3.05 16 11 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 12 N -0.57 -13.18 2.30 -165.53 -0.38 -13.56 16 13 C -0.24 -6.24 7.96 -15.06 -0.12 -6.36 16 14 H 0.05 1.44 6.78 -52.49 -0.36 1.08 16 15 C 0.02 0.58 4.93 -17.43 -0.09 0.50 16 16 N -0.89 -24.85 11.66 55.49 0.65 -24.20 16 17 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 C 0.15 3.45 5.55 -4.04 -0.02 3.42 16 22 C 0.06 1.14 7.39 37.16 0.27 1.41 16 23 O -0.55 -11.55 13.40 -35.23 -0.47 -12.02 16 24 C 0.10 1.89 5.77 -3.71 -0.02 1.87 16 25 C 0.47 5.77 2.51 37.16 0.09 5.87 16 26 F -0.17 -2.38 15.48 2.25 0.03 -2.34 16 27 F -0.18 -1.96 16.73 2.25 0.04 -1.92 16 28 F -0.18 -2.50 17.02 2.25 0.04 -2.46 16 29 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16 30 H 0.09 0.60 7.47 -51.93 -0.39 0.21 16 31 H 0.08 0.51 7.69 -51.93 -0.40 0.11 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.59 4.96 -51.93 -0.26 0.33 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.07 1.36 7.70 -51.93 -0.40 0.96 16 38 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.10 2.56 5.79 -51.93 -0.30 2.26 16 40 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.35 5.56 9.12 45.56 0.42 5.97 16 44 H 0.08 1.76 7.00 -51.93 -0.36 1.40 16 45 H 0.08 1.50 6.83 -51.93 -0.35 1.14 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -31.72 367.37 -5.97 -37.69 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.65 Total: 3.99 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -0.30 Total: 11.65 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.24 Total: -47.01 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.39 Total: -21.87 kcal Atomic # 9 Polarization: -6.83 SS G_CDS: 0.11 Total: -6.72 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.72 -5.97 -37.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489163949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.119 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds