Wall clock time and date at job start Tue Mar 31 2020 21:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47286 * 2 1 4 4 C 1.50699 * 109.46955 * 120.00110 * 2 1 3 5 5 O 1.21281 * 120.00286 * 91.36750 * 4 2 1 6 6 N 1.34781 * 119.99561 * 271.64026 * 4 2 1 7 7 C 1.46925 * 120.63308 * 4.29491 * 6 4 2 8 8 C 1.53626 * 108.54413 * 126.36192 * 7 6 4 9 9 C 1.53046 * 109.23626 * 54.85699 * 8 7 6 10 10 C 1.53036 * 109.54192 * 298.50576 * 9 8 7 11 11 H 1.09001 * 109.50113 * 301.41939 * 10 9 8 12 12 N 1.46497 * 109.52675 * 181.33329 * 10 9 8 13 13 C 1.36936 * 119.99887 * 300.15103 * 12 10 9 14 14 H 1.07995 * 120.00272 * 318.76105 * 13 12 10 15 15 C 1.38809 * 120.00065 * 138.76753 * 13 12 10 16 16 N 1.31624 * 119.99842 * 341.27769 * 15 13 12 17 17 Si 1.86800 * 120.00508 * 161.27773 * 15 13 12 18 18 H 1.48504 * 109.46862 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47501 * 119.99754 * 17 15 13 20 20 H 1.48500 * 109.47406 * 240.00236 * 17 15 13 21 21 C 1.46499 * 119.99732 * 120.14819 * 12 10 9 22 22 C 1.52997 * 109.46920 * 84.44516 * 21 12 10 23 23 O 1.42900 * 109.47565 * 64.99913 * 22 21 12 24 24 C 1.46927 * 120.62584 * 184.56794 * 6 4 2 25 25 C 1.52999 * 109.46845 * 240.00011 * 2 1 3 26 26 F 1.39900 * 109.47222 * 299.99944 * 25 2 1 27 27 F 1.39900 * 109.47502 * 60.00348 * 25 2 1 28 28 F 1.39902 * 109.46712 * 180.02562 * 25 2 1 29 29 H 1.09001 * 109.46918 * 184.10938 * 1 2 3 30 30 H 1.08997 * 109.47038 * 304.10984 * 1 2 3 31 31 H 1.09000 * 109.46727 * 64.11286 * 1 2 3 32 32 H 1.08998 * 109.58723 * 246.19727 * 7 6 4 33 33 H 1.09005 * 109.58539 * 6.62365 * 7 6 4 34 34 H 1.08994 * 109.63758 * 294.86920 * 8 7 6 35 35 H 1.08999 * 109.45912 * 174.73699 * 8 7 6 36 36 H 1.09005 * 109.45780 * 178.48966 * 9 8 7 37 37 H 1.09001 * 109.45920 * 58.53668 * 9 8 7 38 38 H 0.97005 * 120.00052 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.47045 * 204.44019 * 21 12 10 40 40 H 1.08999 * 109.47119 * 324.44082 * 21 12 10 41 41 H 1.09007 * 109.46793 * 184.99477 * 22 21 12 42 42 H 1.09002 * 109.47354 * 304.99137 * 22 21 12 43 43 H 0.96694 * 114.00013 * 179.97438 * 23 22 21 44 44 H 1.08999 * 109.58912 * 353.37661 * 24 6 4 45 45 H 1.08997 * 109.58358 * 113.80425 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.2581 -1.9015 1.1934 6 7 2.2254 -0.0232 2.3737 7 6 1.8625 1.3977 2.4634 8 6 0.9362 1.5899 3.6738 9 6 1.6207 1.0361 4.9256 10 6 1.8766 -0.4623 4.7486 11 1 0.9310 -0.9744 4.5708 12 7 2.5030 -0.9985 5.9595 13 6 3.7070 -0.5034 6.3843 14 1 4.4851 -0.2871 5.6674 15 6 3.9274 -0.2796 7.7364 16 7 2.9070 -0.1827 8.5623 17 14 5.6718 -0.1160 8.3840 18 1 6.6325 -0.2631 7.2611 19 1 5.8438 1.2188 9.0115 20 1 5.9263 -1.1743 9.3941 21 6 1.8412 -2.0643 6.7160 22 6 2.1890 -3.4199 6.0980 23 8 3.5891 -3.6654 6.2449 24 6 2.8084 -0.6792 3.5520 25 6 2.0400 -0.7213 -1.2493 26 9 1.5736 -2.0402 -1.2492 27 9 1.5737 -0.0618 -2.3916 28 9 3.4390 -0.7217 -1.2489 29 1 -0.3633 -1.0250 0.0736 30 1 -0.3633 0.5763 0.8509 31 1 -0.3633 0.4487 -0.9246 32 1 2.7636 1.9977 2.5905 33 1 1.3446 1.7007 1.5534 34 1 -0.0005 1.0585 3.5062 35 1 0.7327 2.6520 3.8102 36 1 0.9778 1.1948 5.7914 37 1 2.5692 1.5510 5.0787 38 1 3.0610 -0.0260 9.5071 39 1 2.1805 -2.0393 7.7516 40 1 0.7617 -1.9164 6.6837 41 1 1.6275 -4.2050 6.6045 42 1 1.9304 -3.4136 5.0391 43 1 3.8814 -4.5096 5.8751 44 1 2.9147 -1.7470 3.3606 45 1 3.7850 -0.2452 3.7661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489163949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:38 Heat of formation + Delta-G solvation = -237.829206 kcal Electronic energy + Delta-G solvation = -32006.101984 eV Core-core repulsion = 27222.448321 eV Total energy + Delta-G solvation = -4783.653663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.14291 -48.66452 -48.57031 -41.43725 -39.11316 -37.74965 -36.33987 -35.14228 -33.62017 -32.93774 -31.19772 -29.08258 -27.50982 -26.69826 -25.96965 -24.21055 -23.47593 -22.39385 -21.48490 -20.30529 -19.69237 -19.39263 -18.51142 -18.28906 -18.23289 -17.91724 -16.91008 -16.41542 -16.30321 -16.05818 -15.63124 -15.54034 -15.41999 -15.24604 -15.04041 -15.02442 -14.77795 -14.71251 -14.50167 -14.43683 -14.29152 -13.96475 -13.89036 -13.54797 -13.31580 -13.09882 -12.99406 -12.85098 -12.73488 -12.53949 -12.38588 -12.28875 -11.95364 -11.72872 -11.63413 -11.56227 -11.24172 -10.93889 -10.70205 -10.44825 -9.73120 -8.42263 -7.76211 -5.38132 1.25723 1.43603 1.49266 1.55789 1.58116 1.93457 2.55280 2.64554 2.93335 2.98879 3.35181 3.48784 3.55982 3.76302 3.81306 3.87692 4.09259 4.11021 4.16301 4.30054 4.45873 4.51209 4.61055 4.63613 4.66011 4.68035 4.79358 4.86644 4.89525 4.97256 5.02210 5.08660 5.15678 5.26260 5.44436 5.51828 5.67156 5.71363 5.80285 6.32709 6.55869 6.95593 7.12723 7.26110 7.90985 8.45195 9.21851 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.017074 B = 0.003428 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.523857 B = 8164.938400 C = 8499.335159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.153 4.153 3 H 0.171 0.829 4 C 0.514 3.486 5 O -0.574 6.574 6 N -0.595 5.595 7 C 0.096 3.904 8 C -0.121 4.121 9 C -0.113 4.113 10 C 0.168 3.832 11 H 0.050 0.950 12 N -0.582 5.582 13 C -0.230 4.230 14 H 0.043 0.957 15 C -0.024 4.024 16 N -0.917 5.917 17 Si 0.944 3.056 18 H -0.275 1.275 19 H -0.290 1.290 20 H -0.298 1.298 21 C 0.147 3.853 22 C 0.067 3.933 23 O -0.574 6.574 24 C 0.121 3.879 25 C 0.465 3.535 26 F -0.183 7.183 27 F -0.171 7.171 28 F -0.193 7.193 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.081 0.919 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.039 0.961 37 H 0.046 0.954 38 H 0.247 0.753 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.028 0.972 43 H 0.375 0.625 44 H 0.056 0.944 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.112 4.791 -18.180 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 H 0.188 0.812 4 C 0.301 3.699 5 O -0.453 6.453 6 N -0.327 5.327 7 C -0.024 4.024 8 C -0.160 4.160 9 C -0.152 4.152 10 C 0.060 3.940 11 H 0.069 0.931 12 N -0.302 5.302 13 C -0.360 4.360 14 H 0.061 0.939 15 C -0.221 4.221 16 N -0.562 5.562 17 Si 0.774 3.226 18 H -0.200 1.200 19 H -0.217 1.217 20 H -0.225 1.225 21 C 0.021 3.979 22 C -0.013 4.013 23 O -0.379 6.379 24 C -0.004 4.004 25 C 0.411 3.589 26 F -0.164 7.164 27 F -0.152 7.152 28 F -0.174 7.174 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.126 0.874 32 H 0.099 0.901 33 H 0.143 0.857 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.221 0.779 44 H 0.075 0.925 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.013 4.779 -17.739 20.043 hybrid contribution 1.360 -1.066 0.567 1.819 sum -6.652 3.713 -17.172 18.786 Atomic orbital electron populations 1.21920 0.86778 1.04663 1.06966 1.22754 1.03233 1.03399 0.88091 0.81152 1.20382 0.77706 0.86892 0.84940 1.90772 1.53167 1.16530 1.84825 1.48196 1.60903 1.12572 1.10986 1.22325 1.00255 0.78991 1.00877 1.21981 0.98258 1.02748 0.93009 1.21754 0.99945 0.96175 0.97366 1.20713 0.93227 0.93951 0.86060 0.93133 1.43752 1.21691 1.38434 1.26363 1.18764 0.90177 1.36536 0.90572 0.93927 1.25649 0.98907 0.99364 0.98154 1.70098 1.30072 1.52857 1.03161 0.85593 0.82600 0.76443 0.77970 1.20019 1.21665 1.22483 1.20874 0.94054 0.85293 0.97670 1.22906 0.81667 0.98608 0.98122 1.86729 1.24827 1.42870 1.83474 1.21870 0.96982 0.97086 0.84448 1.20171 0.75135 0.77852 0.85761 1.93205 1.88266 1.38188 1.96736 1.93194 1.88280 1.80468 1.53274 1.93185 1.30938 1.96456 1.96841 0.92127 0.87461 0.87439 0.90106 0.85714 0.90886 0.88204 0.94231 0.93486 0.94371 0.92072 0.93629 0.93462 0.95402 0.77908 0.92498 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.78 71.98 0.63 -1.13 16 2 C -0.15 -2.67 1.85 -11.54 -0.02 -2.70 16 3 H 0.17 1.65 6.51 -2.39 -0.02 1.64 16 4 C 0.51 14.32 6.50 87.66 0.57 14.89 16 5 O -0.57 -21.66 14.68 -3.03 -0.04 -21.71 16 6 N -0.59 -16.29 2.97 -818.05 -2.43 -18.72 16 7 C 0.10 1.75 6.16 86.51 0.53 2.28 16 8 C -0.12 -2.55 6.10 30.82 0.19 -2.36 16 9 C -0.11 -3.88 5.11 30.62 0.16 -3.73 16 10 C 0.17 6.52 2.78 45.07 0.13 6.65 16 11 H 0.05 1.93 7.87 -2.39 -0.02 1.91 16 12 N -0.58 -27.68 2.30 -677.62 -1.56 -29.24 16 13 C -0.23 -12.21 7.96 84.03 0.67 -11.54 16 14 H 0.04 2.34 6.78 -2.91 -0.02 2.32 16 15 C -0.02 -1.31 4.93 84.86 0.42 -0.89 16 16 N -0.92 -52.65 11.66 21.65 0.25 -52.40 16 17 Si 0.94 45.70 29.59 68.60 2.03 47.73 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 21 C 0.15 6.86 5.55 86.38 0.48 7.34 16 22 C 0.07 2.66 7.39 71.98 0.53 3.19 16 23 O -0.57 -24.41 13.40 -148.98 -2.00 -26.41 16 24 C 0.12 4.47 5.77 86.36 0.50 4.97 16 25 C 0.47 10.37 2.51 71.98 0.18 10.55 16 26 F -0.18 -5.08 15.48 44.97 0.70 -4.38 16 27 F -0.17 -3.11 16.73 44.97 0.75 -2.36 16 28 F -0.19 -5.10 17.02 44.97 0.77 -4.34 16 29 H 0.06 0.99 7.92 -2.39 -0.02 0.97 16 30 H 0.11 0.88 7.47 -2.39 -0.02 0.86 16 31 H 0.11 0.79 7.69 -2.39 -0.02 0.77 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.13 1.11 4.96 -2.38 -0.01 1.10 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.04 1.54 8.14 -2.38 -0.02 1.53 16 37 H 0.05 1.82 7.70 -2.39 -0.02 1.80 16 38 H 0.25 13.88 8.31 -92.70 -0.77 13.10 16 39 H 0.06 3.33 5.79 -2.39 -0.01 3.32 16 40 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 41 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.37 11.70 9.12 -74.06 -0.68 11.03 16 44 H 0.06 2.43 7.00 -2.39 -0.02 2.41 16 45 H 0.05 2.23 6.83 -2.39 -0.02 2.22 16 Total: -1.00 -73.48 367.37 3.79 -69.70 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.35 Total: 14.58 kcal Atomic # 6 Polarization: 22.58 SS G_CDS: 4.96 Total: 27.54 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -3.73 Total: -100.35 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -2.04 Total: -48.12 kcal Atomic # 9 Polarization: -13.29 SS G_CDS: 2.21 Total: -11.08 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -73.48 3.79 -69.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489163949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.132 kcal (2) G-P(sol) polarization free energy of solvation -73.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds