Wall clock time and date at job start Tue Mar 31 2020 21:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46503 * 109.47117 * 2 1 4 4 C 1.34949 * 126.03473 * 125.02520 * 3 2 1 5 5 C 1.35315 * 107.74407 * 179.75030 * 4 3 2 6 6 C 1.39866 * 107.92009 * 0.40129 * 5 4 3 7 7 C 1.50701 * 125.90088 * 179.86238 * 6 5 4 8 8 N 1.46904 * 109.47311 * 94.70980 * 7 6 5 9 9 C 1.47843 * 110.99640 * 69.15748 * 8 7 6 10 10 C 1.54916 * 104.79337 * 146.36598 * 9 8 7 11 11 C 1.55398 * 101.74107 * 323.02060 * 10 9 8 12 12 H 1.09005 * 110.67856 * 277.17709 * 11 10 9 13 13 N 1.46495 * 110.84661 * 153.86291 * 11 10 9 14 14 C 1.34771 * 120.00262 * 91.46275 * 13 11 10 15 15 O 1.21287 * 119.99772 * 0.02562 * 14 13 11 16 16 C 1.50700 * 120.00365 * 179.97438 * 14 13 11 17 17 S 1.80998 * 109.47346 * 180.02562 * 16 14 13 18 18 C 1.76202 * 100.00206 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99564 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99890 * 179.97438 * 18 17 16 21 21 N 1.31628 * 119.99612 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00367 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46623 * 89.99665 * 22 20 18 24 24 H 1.48497 * 109.47353 * 209.99819 * 22 20 18 25 25 H 1.48500 * 109.47158 * 330.00270 * 22 20 18 26 26 C 1.47439 * 111.00045 * 190.00457 * 8 7 6 27 27 N 1.30837 * 108.20515 * 359.59368 * 6 5 4 28 28 H 1.08996 * 109.46850 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46756 * 299.99088 * 1 2 3 30 30 H 1.08992 * 109.47464 * 59.99474 * 1 2 3 31 31 H 1.09000 * 109.46883 * 240.00428 * 2 1 3 32 32 H 1.08992 * 109.47464 * 120.00526 * 2 1 3 33 33 H 1.08002 * 126.12419 * 0.02562 * 4 3 2 34 34 H 1.08001 * 126.04064 * 180.27100 * 5 4 3 35 35 H 1.09006 * 109.46901 * 334.71334 * 7 6 5 36 36 H 1.08995 * 109.47570 * 214.71059 * 7 6 5 37 37 H 1.08996 * 110.37823 * 265.19398 * 9 8 7 38 38 H 1.09001 * 110.37314 * 27.42672 * 9 8 7 39 39 H 1.08995 * 110.98807 * 81.01940 * 10 9 8 40 40 H 1.08997 * 110.99078 * 204.83973 * 10 9 8 41 41 H 0.96997 * 120.00031 * 271.46113 * 13 11 10 42 42 H 1.08998 * 109.47160 * 300.00257 * 16 14 13 43 43 H 1.09004 * 109.46884 * 60.00537 * 16 14 13 44 44 H 0.96998 * 120.00233 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.88998 * 356.14887 * 26 8 7 46 46 H 1.09003 * 109.88733 * 117.17548 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8735 1.9209 0.8936 5 6 3.0763 3.2119 0.5427 6 6 2.3121 3.4726 -0.5993 7 6 2.2350 4.7886 -1.3296 8 7 3.1985 4.7905 -2.4386 9 6 2.7855 3.8488 -3.5008 10 6 3.2567 4.5096 -4.8203 11 6 2.9980 6.0142 -4.5305 12 1 1.9554 6.2692 -4.7206 13 7 3.8927 6.8595 -5.3250 14 6 3.5020 7.3022 -6.5365 15 8 2.4095 7.0011 -6.9688 16 6 4.4221 8.1722 -7.3536 17 16 3.6174 8.5995 -8.9175 18 6 4.8781 9.5889 -9.6500 19 1 5.8049 9.7601 -9.1225 20 6 4.6805 10.1472 -10.9052 21 7 5.6221 10.8867 -11.4522 22 14 3.0784 9.8494 -11.8184 23 1 2.1028 10.9120 -11.4657 24 1 3.3305 9.8746 -13.2816 25 1 2.5282 8.5248 -11.4336 26 6 3.3241 6.1365 -3.0271 27 7 1.6801 2.3750 -0.9276 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8898 33 1 3.3199 1.4122 1.7353 34 1 3.7139 3.9171 1.0552 35 1 2.4713 5.6003 -0.6416 36 1 1.2280 4.9274 -1.7231 37 1 3.2741 2.8842 -3.3639 38 1 1.7022 3.7280 -3.5007 39 1 4.3168 4.3240 -4.9930 40 1 2.6591 4.1655 -5.6645 41 1 4.7662 7.1006 -4.9791 42 1 4.6467 9.0839 -6.8000 43 1 5.3473 7.6327 -7.5562 44 1 5.4843 11.2766 -12.3295 45 1 2.6199 6.8174 -2.5490 46 1 4.3419 6.5045 -2.8971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494692729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:50 Heat of formation + Delta-G solvation = 48.544021 kcal Electronic energy + Delta-G solvation = -25703.998516 eV Core-core repulsion = 21949.665290 eV Total energy + Delta-G solvation = -3754.333226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51597 -39.88565 -38.40517 -35.25402 -34.19327 -32.42824 -31.93919 -30.48507 -29.73210 -29.47960 -27.96498 -26.07849 -25.57258 -23.44703 -21.77677 -21.25870 -21.19064 -20.41919 -19.84929 -17.88888 -17.42637 -16.70529 -16.49303 -15.88422 -15.76584 -15.09401 -14.97122 -14.82545 -14.68365 -14.58485 -13.94476 -13.81153 -13.72609 -13.43184 -13.20411 -12.97008 -12.78587 -12.67742 -12.60874 -12.33690 -12.18192 -12.00287 -11.83445 -11.60828 -11.46439 -11.25151 -11.00493 -10.96809 -10.78395 -10.58959 -9.84873 -9.62875 -9.50811 -9.00740 -8.94491 -8.85952 -8.60349 -8.48800 -6.90485 -6.27767 -3.99400 1.57523 2.13694 2.44236 2.77375 2.96721 3.30137 3.34717 3.51652 3.63995 3.86454 4.01947 4.34032 4.34340 4.41823 4.45676 4.53177 4.58836 4.68363 4.76389 4.84053 4.92068 5.08549 5.11361 5.13119 5.14003 5.21013 5.26144 5.34826 5.41304 5.44877 5.54032 5.61184 5.67606 5.74292 5.77895 5.83424 5.91694 6.01738 6.05121 6.34183 6.58132 6.64035 6.70414 6.71688 7.44427 7.62749 7.95321 8.42934 8.50249 9.18479 10.81469 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.034223 B = 0.001697 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.972478 B =16499.849502 C =16973.701540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.131 3.869 3 N -0.373 5.373 4 C 0.047 3.953 5 C -0.255 4.255 6 C 0.082 3.918 7 C 0.129 3.871 8 N -0.519 5.519 9 C 0.051 3.949 10 C -0.142 4.142 11 C 0.128 3.872 12 H 0.097 0.903 13 N -0.726 5.726 14 C 0.532 3.468 15 O -0.520 6.520 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.038 3.962 27 N -0.286 5.286 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.171 0.829 34 H 0.146 0.854 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.401 0.599 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.271 0.729 45 H 0.065 0.935 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.571 -20.393 29.069 35.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 N -0.156 5.156 4 C -0.098 4.098 5 C -0.284 4.284 6 C -0.084 4.084 7 C 0.000 4.000 8 N -0.244 5.244 9 C -0.077 4.077 10 C -0.181 4.181 11 C 0.021 3.979 12 H 0.115 0.885 13 N -0.380 5.380 14 C 0.318 3.682 15 O -0.394 6.394 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.090 4.090 27 N -0.109 5.109 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.188 0.812 34 H 0.164 0.836 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.236 0.764 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.718 -21.643 27.595 35.909 hybrid contribution 1.093 1.001 0.508 1.566 sum -6.626 -20.643 28.103 35.494 Atomic orbital electron populations 1.22054 0.93774 1.02869 1.03625 1.21673 0.96113 0.77556 1.03678 1.48696 1.35749 1.10002 1.21178 1.22527 0.95787 0.95063 0.96436 1.21349 1.08786 0.96625 1.01673 1.22041 0.96180 0.94559 0.95662 1.20621 0.94914 0.91529 0.92956 1.63582 1.46067 1.06161 1.08631 1.22970 0.99183 0.96387 0.89137 1.23195 1.02669 0.94761 0.97464 1.22125 0.95752 0.90145 0.89882 0.88523 1.45898 1.20149 1.53205 1.18750 1.20305 0.87499 0.79554 0.80807 1.90698 1.21994 1.56946 1.69767 1.23280 1.01822 1.01579 1.00779 1.84787 1.26785 1.66559 1.13466 1.22323 1.03267 1.35015 1.06298 0.89372 1.24708 0.96924 0.93473 0.96180 1.69937 1.33105 1.31786 1.16862 0.86736 0.83759 0.81661 0.79704 1.19219 1.19948 1.15934 1.23036 1.02771 0.90381 0.92815 1.77280 1.23940 0.96579 1.13115 0.90721 0.92158 0.91010 0.89812 0.88760 0.81175 0.83591 0.88706 0.92936 0.90369 0.92849 0.90277 0.90165 0.76415 0.88443 0.88409 0.91956 0.91652 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.10 37.16 0.38 -0.41 16 2 C 0.13 0.63 7.23 -4.04 -0.03 0.60 16 3 N -0.37 -3.05 3.68 -61.36 -0.23 -3.27 16 4 C 0.05 0.33 11.45 -17.22 -0.20 0.14 16 5 C -0.25 -2.13 10.74 -40.01 -0.43 -2.56 16 6 C 0.08 0.81 6.24 -82.41 -0.51 0.30 16 7 C 0.13 1.14 5.13 -4.97 -0.03 1.11 16 8 N -0.52 -5.02 5.15 -232.68 -1.20 -6.21 16 9 C 0.05 0.54 6.05 -2.29 -0.01 0.52 16 10 C -0.14 -1.61 6.77 -24.45 -0.17 -1.78 16 11 C 0.13 1.48 3.32 -65.97 -0.22 1.26 16 12 H 0.10 1.30 7.55 -51.93 -0.39 0.91 16 13 N -0.73 -9.19 5.18 -51.91 -0.27 -9.46 16 14 C 0.53 9.39 7.85 -10.99 -0.09 9.31 16 15 O -0.52 -11.19 15.51 5.55 0.09 -11.10 16 16 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 17 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 18 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 19 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 20 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.65 13.97 55.49 0.78 -25.87 16 22 Si 0.86 21.91 27.74 -169.99 -4.71 17.19 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 26 C 0.04 0.35 6.61 -2.84 -0.02 0.33 16 27 N -0.29 -3.06 12.26 33.67 0.41 -2.65 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.19 8.07 -51.93 -0.42 -0.23 16 33 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.09 0.67 8.03 -51.93 -0.42 0.25 16 36 H 0.05 0.48 7.85 -51.93 -0.41 0.07 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.59 7.62 -51.93 -0.40 0.19 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.40 3.94 8.37 -40.82 -0.34 3.60 16 42 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 43 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 44 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.07 0.53 7.55 -51.93 -0.39 0.13 16 46 H 0.09 0.71 7.71 -51.93 -0.40 0.31 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -36.01 394.67 -9.46 -45.47 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.39 Total: 0.99 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -0.89 Total: -5.41 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.51 Total: -47.47 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.01 -9.46 -45.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494692729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.015 kcal (2) G-P(sol) polarization free energy of solvation -36.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds