Wall clock time and date at job start Tue Mar 31 2020 21:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47050 * 2 1 4 4 C 1.52998 * 109.47025 * 120.00158 * 2 1 3 5 5 N 1.46504 * 109.47113 * 294.99734 * 4 2 1 6 6 C 1.34771 * 120.00225 * 179.97438 * 5 4 2 7 7 O 1.21285 * 119.99849 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00233 * 179.97438 * 6 5 4 9 9 S 1.80997 * 109.47228 * 180.02562 * 8 6 5 10 10 C 1.76197 * 99.99940 * 180.02562 * 9 8 6 11 11 H 1.07997 * 120.00057 * 359.97438 * 10 9 8 12 12 C 1.38798 * 119.99806 * 179.97438 * 10 9 8 13 13 N 1.31631 * 120.00136 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00438 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47119 * 89.99592 * 14 12 10 16 16 H 1.48502 * 109.47405 * 209.99819 * 14 12 10 17 17 H 1.48503 * 109.46833 * 330.00051 * 14 12 10 18 18 C 1.53000 * 109.47011 * 239.99913 * 2 1 3 19 19 N 1.46899 * 109.47209 * 64.99987 * 18 2 1 20 20 C 1.46903 * 110.99972 * 179.97438 * 19 18 2 21 21 H 1.08998 * 109.46858 * 325.00057 * 20 19 18 22 22 C 1.53000 * 109.46981 * 85.00430 * 20 19 18 23 23 C 1.50696 * 109.47004 * 205.00288 * 20 19 18 24 24 C 1.38382 * 120.00211 * 154.97717 * 23 20 19 25 25 N 1.32124 * 120.00287 * 180.02562 * 24 23 20 26 26 C 1.32153 * 119.99716 * 0.02562 * 25 24 23 27 27 C 1.38341 * 120.00474 * 359.97438 * 26 25 24 28 28 N 1.32127 * 120.00458 * 335.00086 * 23 20 19 29 29 H 1.09004 * 109.47105 * 300.00391 * 1 2 3 30 30 H 1.09004 * 109.46993 * 59.99542 * 1 2 3 31 31 H 1.08993 * 109.47485 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47579 * 54.99263 * 4 2 1 33 33 H 1.08996 * 109.47429 * 174.99823 * 4 2 1 34 34 H 0.97002 * 119.99717 * 0.02562 * 5 4 2 35 35 H 1.08995 * 109.46932 * 300.00322 * 8 6 5 36 36 H 1.09004 * 109.46505 * 60.00797 * 8 6 5 37 37 H 0.97001 * 120.00416 * 180.02562 * 13 12 10 38 38 H 1.09007 * 109.46936 * 305.00151 * 18 2 1 39 39 H 1.08997 * 109.47230 * 185.00509 * 18 2 1 40 40 H 1.00899 * 111.00428 * 303.95465 * 19 18 2 41 41 H 1.08994 * 109.46848 * 180.02562 * 22 20 19 42 42 H 1.09001 * 109.46894 * 300.00001 * 22 20 19 43 43 H 1.09000 * 109.47017 * 59.99670 * 22 20 19 44 44 H 1.08000 * 120.00109 * 0.02562 * 24 23 20 45 45 H 1.08002 * 120.00395 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.00556 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 0.0354 2.4424 6 6 1.9955 -0.4136 3.6659 7 8 2.6255 -1.4438 3.7793 8 6 1.5974 0.3650 4.8933 9 16 2.2005 -0.4883 6.3711 10 6 1.6111 0.6072 7.6190 11 1 1.0592 1.4934 7.3427 12 6 1.8562 0.3312 8.9569 13 7 1.4155 1.1493 9.8892 14 14 2.8114 -1.2013 9.4348 15 1 4.2609 -0.8835 9.4916 16 1 2.3556 -1.6735 10.7670 17 1 2.5772 -2.2653 8.4257 18 6 2.0400 -0.7213 -1.2492 19 7 1.6514 0.0374 -2.4456 20 6 2.1258 -0.6266 -3.6672 21 1 3.0895 -1.0976 -3.4737 22 6 1.1140 -1.6918 -4.0944 23 6 2.2765 0.3927 -4.7668 24 6 3.1589 0.1625 -5.8075 25 7 3.2915 1.0564 -6.7714 26 6 2.5816 2.1707 -6.7412 27 6 1.6994 2.4010 -5.7008 28 7 1.5664 1.5066 -4.7371 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7996 1.2056 34 1 1.1483 0.8591 2.3518 35 1 2.0328 1.3632 4.8474 36 1 0.5111 0.4440 4.9368 37 1 1.5870 0.9566 10.8243 38 1 1.6053 -1.7199 -1.2951 39 1 3.1263 -0.7996 -1.2056 40 1 0.6528 0.1793 -2.4754 41 1 1.4662 -2.1848 -5.0004 42 1 1.0050 -2.4291 -3.2989 43 1 0.1502 -1.2208 -4.2877 44 1 3.7394 -0.7480 -5.8320 45 1 2.6901 2.9017 -7.5288 46 1 1.1195 3.3118 -5.6760 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495620908.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:58 Heat of formation + Delta-G solvation = 1.660013 kcal Electronic energy + Delta-G solvation = -25279.608913 eV Core-core repulsion = 21523.242644 eV Total energy + Delta-G solvation = -3756.366269 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.55285 -39.45045 -38.18975 -36.07468 -34.46413 -33.37683 -32.43048 -31.61481 -29.83918 -29.12223 -26.87007 -25.70692 -25.55263 -25.12773 -24.13644 -21.70144 -20.68153 -20.30960 -17.99017 -17.87535 -17.47570 -16.96779 -16.38241 -16.25763 -15.72653 -15.48084 -15.15358 -15.01265 -14.89917 -14.72941 -14.31373 -13.85869 -13.54408 -13.50739 -13.33841 -13.09282 -12.94839 -12.80474 -12.78252 -12.44780 -11.98608 -11.96070 -11.91265 -11.57617 -11.34843 -11.24757 -11.18494 -11.08336 -11.00048 -10.58599 -9.85125 -9.72009 -9.53658 -9.47491 -9.00889 -8.93966 -8.81757 -8.49048 -6.90799 -6.28148 -3.99787 0.30679 0.72263 2.77476 3.00189 3.20478 3.29583 3.34186 3.50745 3.51711 3.56550 3.73849 3.83360 4.14574 4.25570 4.33927 4.47848 4.53574 4.57918 4.62240 4.69724 4.77100 4.79371 4.85583 4.97114 5.08223 5.10937 5.14662 5.23367 5.27543 5.33623 5.35979 5.51957 5.57457 5.60871 5.69788 5.79159 5.89216 5.95344 6.01363 6.03469 6.47159 6.57497 6.87201 6.96362 7.36656 7.63548 7.94891 8.42489 8.51573 9.18081 10.81068 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031825 B = 0.001539 C = 0.001516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.591058 B =18185.727972 C =18460.212585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 H 0.088 0.912 4 C 0.127 3.873 5 N -0.735 5.735 6 C 0.530 3.470 7 O -0.521 6.521 8 C -0.124 4.124 9 S -0.142 6.142 10 C -0.522 4.522 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.881 5.881 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.065 3.935 19 N -0.670 5.670 20 C 0.136 3.864 21 H 0.100 0.900 22 C -0.179 4.179 23 C 0.097 3.903 24 C 0.050 3.950 25 N -0.437 5.437 26 C 0.038 3.962 27 C 0.052 3.948 28 N -0.414 5.414 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.399 0.601 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.271 0.729 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.351 0.649 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.166 0.834 45 H 0.168 0.832 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.572 -0.629 -35.340 35.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.120 4.120 3 H 0.106 0.894 4 C 0.003 3.997 5 N -0.389 5.389 6 C 0.316 3.684 7 O -0.396 6.396 8 C -0.275 4.275 9 S 0.084 5.916 10 C -0.669 4.669 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C -0.065 4.065 19 N -0.302 5.302 20 C 0.024 3.976 21 H 0.118 0.882 22 C -0.238 4.238 23 C -0.045 4.045 24 C -0.111 4.111 25 N -0.152 5.152 26 C -0.122 4.122 27 C -0.107 4.107 28 N -0.129 5.129 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.234 0.766 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.171 0.829 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.184 0.816 45 H 0.185 0.815 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.002 -1.872 -34.920 34.970 hybrid contribution -1.229 0.522 0.161 1.345 sum -1.231 -1.350 -34.758 34.806 Atomic orbital electron populations 1.21892 0.94704 1.02089 1.02207 1.21346 0.96414 1.01108 0.93110 0.89389 1.21250 1.00040 0.95239 0.83210 1.45944 1.59387 1.28157 1.05444 1.20270 0.78756 0.85460 0.83927 1.90697 1.38649 1.23970 1.86278 1.23279 1.05054 1.02971 0.96176 1.84778 1.74678 1.35445 0.96708 1.22325 1.41599 1.11049 0.91951 0.89389 1.24711 0.94611 0.96712 0.95252 1.69939 1.44481 1.36565 1.00726 0.86733 0.80994 0.84380 0.79732 1.19214 1.19947 1.15931 1.21961 1.00923 0.94728 0.88852 1.60361 1.21055 1.48933 0.99888 1.20349 0.99768 0.89791 0.87680 0.88180 1.22489 0.99687 0.99057 1.02604 1.22222 0.92974 0.93795 0.95483 1.23523 0.97349 0.99296 0.90924 1.68457 1.20429 1.01737 1.24533 1.23773 0.93689 0.95528 0.99172 1.23854 0.97164 0.99117 0.90610 1.68286 1.20555 1.00716 1.23353 0.92088 0.92197 0.92588 0.91662 0.91562 0.76634 0.88510 0.88496 0.91955 0.94542 0.90502 0.82878 0.91595 0.91246 0.91923 0.81638 0.81489 0.81380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.84 37.16 0.33 -0.72 16 2 C -0.10 -0.75 2.63 -90.62 -0.24 -0.99 16 3 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.13 1.34 5.06 -4.04 -0.02 1.32 16 5 N -0.73 -9.14 5.28 -60.29 -0.32 -9.45 16 6 C 0.53 9.38 7.85 -10.99 -0.09 9.29 16 7 O -0.52 -11.26 15.86 5.55 0.09 -11.17 16 8 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 9 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 10 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 11 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 12 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 13 N -0.88 -26.63 13.97 55.49 0.78 -25.86 16 14 Si 0.86 21.86 27.74 -169.99 -4.72 17.14 16 15 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.24 -6.00 6.74 56.52 0.38 -5.61 16 18 C 0.06 0.42 4.94 -3.82 -0.02 0.40 16 19 N -0.67 -4.43 5.81 -107.95 -0.63 -5.06 16 20 C 0.14 0.76 2.85 -68.87 -0.20 0.57 16 21 H 0.10 0.47 7.77 -51.93 -0.40 0.06 16 22 C -0.18 -0.80 9.14 37.16 0.34 -0.46 16 23 C 0.10 0.68 5.89 -82.41 -0.49 0.20 16 24 C 0.05 0.33 10.90 -17.37 -0.19 0.14 16 25 N -0.44 -3.43 10.50 -13.06 -0.14 -3.56 16 26 C 0.04 0.22 11.22 -17.38 -0.20 0.03 16 27 C 0.05 0.32 11.22 -17.37 -0.20 0.12 16 28 N -0.41 -3.31 9.90 -9.29 -0.09 -3.41 16 29 H 0.06 0.44 7.18 -51.93 -0.37 0.07 16 30 H 0.06 0.37 6.68 -51.93 -0.35 0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.40 3.92 7.65 -40.82 -0.31 3.61 16 35 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 36 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 37 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.04 0.22 7.44 -51.93 -0.39 -0.17 16 39 H 0.08 0.52 8.05 -51.93 -0.42 0.10 16 40 H 0.35 2.32 6.73 -39.29 -0.26 2.05 16 41 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.29 7.45 -51.93 -0.39 -0.10 16 43 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 44 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.17 0.48 8.06 -52.49 -0.42 0.06 16 46 H 0.17 0.54 8.06 -52.49 -0.42 0.11 16 LS Contribution 395.41 15.07 5.96 5.96 Total: -1.00 -36.10 395.41 -8.70 -44.81 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.12 Total: 0.58 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -0.52 Total: -4.35 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.40 Total: -47.34 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.14 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.10 -8.70 -44.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495620908.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.465 kcal (2) G-P(sol) polarization free energy of solvation -36.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds