Wall clock time and date at job start Tue Mar 31 2020 21:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47497 * 2 1 4 4 C 1.53000 * 109.47180 * 239.99909 * 2 1 3 5 5 N 1.46499 * 109.47465 * 184.99833 * 4 2 1 6 6 C 1.36933 * 120.00312 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99936 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00240 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99768 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00363 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47366 * 89.99578 * 10 8 6 12 12 H 1.48503 * 109.47139 * 210.00036 * 10 8 6 13 13 H 1.48501 * 109.46818 * 329.99693 * 10 8 6 14 14 N 1.46504 * 109.47171 * 120.00040 * 2 1 3 15 15 C 1.46496 * 119.99769 * 60.00321 * 14 2 1 16 16 C 1.34777 * 120.00052 * 239.99680 * 14 2 1 17 17 O 1.21277 * 119.99592 * 0.02562 * 16 14 2 18 18 C 1.50699 * 119.99869 * 179.97438 * 16 14 2 19 19 H 1.08998 * 115.56368 * 34.31493 * 18 16 14 20 20 C 1.52998 * 117.49759 * 248.62386 * 18 16 14 21 21 C 1.52995 * 59.99976 * 252.51136 * 20 18 16 22 22 H 1.09008 * 117.49578 * 107.51360 * 21 20 18 23 23 C 1.50697 * 117.50143 * 252.50973 * 21 20 18 24 24 C 1.38256 * 119.99821 * 8.58974 * 23 21 20 25 25 C 1.38220 * 120.07154 * 180.02562 * 24 23 21 26 26 C 1.38261 * 120.06621 * 359.97438 * 25 24 23 27 27 C 1.38365 * 120.00133 * 359.74221 * 26 25 24 28 28 F 1.35103 * 120.03378 * 180.25553 * 27 26 25 29 29 C 1.38366 * 120.00152 * 188.60763 * 23 21 20 30 30 F 1.35104 * 120.03627 * 359.95910 * 29 23 21 31 31 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47342 * 300.00147 * 1 2 3 33 33 H 1.09002 * 109.47092 * 59.99877 * 1 2 3 34 34 H 1.09003 * 109.47542 * 305.00360 * 4 2 1 35 35 H 1.09010 * 109.47292 * 65.00195 * 4 2 1 36 36 H 0.97005 * 119.99962 * 0.02562 * 5 4 2 37 37 H 0.97008 * 120.00205 * 180.02562 * 9 8 6 38 38 H 1.09005 * 109.47096 * 269.99604 * 15 14 2 39 39 H 1.08997 * 109.47715 * 29.99255 * 15 14 2 40 40 H 1.09005 * 109.47342 * 150.00488 * 15 14 2 41 41 H 1.09004 * 117.50035 * 145.02239 * 20 18 16 42 42 H 1.09004 * 117.50160 * 0.02562 * 20 18 16 43 43 H 1.07996 * 119.96780 * 359.97438 * 24 23 21 44 44 H 1.08000 * 119.96504 * 179.97438 * 25 24 23 45 45 H 1.08000 * 119.99386 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1838 -1.4379 -2.2072 7 1 3.6468 -1.8431 -3.0521 8 6 5.5672 -1.5380 -2.1515 9 7 6.2217 -1.0446 -1.1216 10 14 6.5002 -2.3716 -3.5386 11 1 6.8629 -1.3636 -4.5671 12 1 7.7353 -2.9955 -2.9996 13 1 5.6439 -3.4185 -4.1519 14 7 2.0183 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4279 16 6 2.7932 -0.0357 2.0833 17 8 3.0858 1.1255 1.8916 18 6 3.2951 -0.7459 3.3141 19 1 3.5213 -1.8046 3.1868 20 6 2.7318 -0.3014 4.6653 21 6 4.1703 0.0519 4.2826 22 1 4.3832 1.0907 4.0300 23 6 5.2792 -0.6859 4.9876 24 6 4.9834 -1.7602 5.8061 25 6 5.9992 -2.4377 6.4538 26 6 7.3133 -2.0428 6.2842 27 6 7.6131 -0.9718 5.4611 28 9 8.8974 -0.5886 5.2908 29 6 6.5932 -0.2881 4.8161 30 9 6.8831 0.7613 4.0160 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.6053 -1.7198 -1.2952 35 1 1.7516 -0.1583 -2.1371 36 1 3.9824 -0.4628 -0.4316 37 1 7.1885 -1.1142 -1.0827 38 1 0.7376 -2.1444 1.9993 39 1 1.5294 -2.5969 0.4708 40 1 2.4629 -2.5819 1.9864 41 1 2.5873 -1.0676 5.4271 42 1 1.9978 0.5046 4.6641 43 1 3.9575 -2.0698 5.9402 44 1 5.7661 -3.2764 7.0931 45 1 8.1060 -2.5728 6.7912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496232256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:59 Heat of formation + Delta-G solvation = -53.226940 kcal Electronic energy + Delta-G solvation = -29711.551626 eV Core-core repulsion = 25366.672142 eV Total energy + Delta-G solvation = -4344.879484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.40613 -48.46682 -40.26899 -39.14031 -37.01458 -35.76271 -33.94296 -31.91367 -30.82190 -30.40027 -30.00904 -26.61636 -25.67491 -24.87977 -24.18370 -22.82195 -22.47234 -21.08879 -20.24737 -18.58563 -18.14521 -17.52582 -17.06513 -17.01022 -16.65230 -16.28630 -15.87165 -15.40280 -14.98249 -14.86738 -14.69641 -14.46572 -14.32273 -13.98727 -13.60580 -13.24462 -13.09566 -12.86121 -12.63156 -12.50312 -12.42652 -12.33205 -12.25897 -12.03599 -11.81159 -11.75780 -11.44525 -11.28428 -10.84497 -10.80318 -10.73295 -10.56781 -10.43846 -10.01772 -9.65936 -9.42828 -8.89838 -8.83130 -8.78218 -8.23374 -6.86019 -5.68484 -2.98659 0.76996 0.81948 2.76715 3.15045 3.30367 3.46391 3.50812 3.53246 3.64238 3.94782 4.26958 4.32261 4.49366 4.61381 4.65581 4.67096 4.78105 4.88203 5.00867 5.11544 5.28820 5.41387 5.45508 5.46154 5.59331 5.60894 5.64811 5.66365 5.71329 5.78335 5.82226 5.84892 5.96156 5.99155 6.09752 6.12653 6.21065 6.23824 6.39527 6.53379 6.61510 6.74612 7.01495 7.73409 7.76323 8.48202 8.57455 9.59708 10.18592 10.53790 11.53129 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008754 B = 0.004136 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.757804 B = 6767.983277 C = 9008.794387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 H 0.100 0.900 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.243 4.243 7 H 0.069 0.931 8 C -0.011 4.011 9 N -0.926 5.926 10 Si 0.904 3.096 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.591 5.591 15 C 0.083 3.917 16 C 0.547 3.453 17 O -0.537 6.537 18 C -0.163 4.163 19 H 0.129 0.871 20 C -0.140 4.140 21 C -0.091 4.091 22 H 0.133 0.867 23 C -0.054 4.054 24 C -0.105 4.105 25 C -0.100 4.100 26 C -0.132 4.132 27 C 0.069 3.931 28 F -0.128 7.128 29 C 0.084 3.916 30 F -0.117 7.117 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.020 0.980 35 H 0.028 0.972 36 H 0.387 0.613 37 H 0.255 0.745 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.539 -3.873 18.944 21.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 H 0.118 0.882 4 C 0.015 3.985 5 N -0.373 5.373 6 C -0.375 4.375 7 H 0.087 0.913 8 C -0.208 4.208 9 N -0.574 5.574 10 Si 0.736 3.264 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.324 5.324 15 C -0.060 4.060 16 C 0.335 3.665 17 O -0.414 6.414 18 C -0.184 4.184 19 H 0.147 0.853 20 C -0.177 4.177 21 C -0.109 4.109 22 H 0.151 0.849 23 C -0.056 4.056 24 C -0.123 4.123 25 C -0.118 4.118 26 C -0.151 4.151 27 C 0.049 3.951 28 F -0.107 7.107 29 C 0.064 3.936 30 F -0.095 7.095 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.221 0.779 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.283 -3.287 18.627 20.649 hybrid contribution 1.228 -0.306 -0.928 1.569 sum -7.055 -3.592 17.699 19.389 Atomic orbital electron populations 1.22041 0.95143 1.02021 1.01977 1.21401 0.93237 0.98548 0.84627 0.88239 1.21000 0.87187 0.96695 0.93624 1.42308 0.99646 1.70176 1.25140 1.19186 0.89433 1.29670 0.99161 0.91335 1.24753 0.96451 1.01631 0.97941 1.69693 1.07154 1.50549 1.30006 0.86237 0.79568 0.79002 0.81636 1.21731 1.21835 1.20842 1.47539 1.50386 1.12210 1.22220 1.21710 0.99734 0.81991 1.02582 1.19381 0.77619 0.86286 0.83234 1.90692 1.57157 1.17139 1.76404 1.22390 1.04798 1.00842 0.90321 0.85307 1.23124 0.95588 1.03518 0.95506 1.20901 0.89154 1.00466 1.00407 0.84942 1.19081 0.91355 0.96854 0.98260 1.21015 1.00499 0.94448 0.96296 1.21003 0.91344 0.99862 0.99588 1.21069 0.98580 0.96215 0.99258 1.17695 0.78392 0.97726 1.01285 1.91538 1.34378 1.90536 1.94218 1.17518 0.92554 0.88797 0.94775 1.91594 1.93879 1.53520 1.70544 0.92408 0.92714 0.91454 0.96227 0.95483 0.77909 0.93539 0.93277 0.90463 0.91303 0.87390 0.87556 0.84171 0.84232 0.83824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.19 37.16 0.34 -1.62 16 2 C 0.12 2.17 2.80 -67.93 -0.19 1.97 16 3 H 0.10 1.99 6.90 -51.93 -0.36 1.63 16 4 C 0.14 2.94 5.50 -4.04 -0.02 2.91 16 5 N -0.73 -19.21 5.43 -59.91 -0.33 -19.54 16 6 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 7 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 8 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 9 N -0.93 -29.36 13.06 55.49 0.72 -28.64 16 10 Si 0.90 23.06 29.55 -169.99 -5.02 18.03 16 11 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 12 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 N -0.59 -9.79 2.24 -173.93 -0.39 -10.18 16 15 C 0.08 1.09 9.32 59.84 0.56 1.64 16 16 C 0.55 9.89 7.16 -10.99 -0.08 9.81 16 17 O -0.54 -11.80 15.59 5.56 0.09 -11.71 16 18 C -0.16 -2.28 4.92 -91.78 -0.45 -2.73 16 19 H 0.13 1.68 6.44 -51.93 -0.33 1.34 16 20 C -0.14 -1.42 9.56 -26.73 -0.26 -1.68 16 21 C -0.09 -1.25 5.31 -91.78 -0.49 -1.74 16 22 H 0.13 2.15 7.39 -51.92 -0.38 1.77 16 23 C -0.05 -0.70 5.61 -104.57 -0.59 -1.29 16 24 C -0.10 -0.97 9.30 -39.58 -0.37 -1.34 16 25 C -0.10 -0.81 10.04 -39.58 -0.40 -1.21 16 26 C -0.13 -1.31 10.02 -39.53 -0.40 -1.70 16 27 C 0.07 0.94 7.31 -39.37 -0.29 0.65 16 28 F -0.13 -1.91 17.18 2.25 0.04 -1.87 16 29 C 0.08 1.28 7.25 -39.37 -0.29 0.99 16 30 F -0.12 -2.15 16.53 2.25 0.04 -2.11 16 31 H 0.06 0.66 7.67 -51.93 -0.40 0.26 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.02 0.39 6.88 -51.93 -0.36 0.03 16 35 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.39 11.14 7.06 -40.82 -0.29 10.85 16 37 H 0.25 7.86 8.31 -40.82 -0.34 7.52 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 1.08 6.53 -51.93 -0.34 0.74 16 40 H 0.07 0.86 6.00 -51.93 -0.31 0.54 16 41 H 0.11 0.74 6.18 -51.93 -0.32 0.42 16 42 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.14 0.90 6.02 -52.49 -0.32 0.59 16 44 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 45 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 379.74 15.07 5.72 5.72 Total: -1.00 -36.11 379.74 -8.20 -44.31 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.91 Total: 8.89 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -3.15 Total: -2.90 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.01 Total: -58.36 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.08 Total: -3.98 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.11 -8.20 -44.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496232256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.918 kcal (2) G-P(sol) polarization free energy of solvation -36.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds