Wall clock time and date at job start Tue Mar 31 2020 21:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47497 * 2 1 4 4 C 1.53000 * 109.47180 * 239.99909 * 2 1 3 5 5 N 1.46499 * 109.47465 * 184.99833 * 4 2 1 6 6 C 1.36933 * 120.00312 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99936 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00240 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99768 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00363 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47366 * 89.99578 * 10 8 6 12 12 H 1.48503 * 109.47139 * 210.00036 * 10 8 6 13 13 H 1.48501 * 109.46818 * 329.99693 * 10 8 6 14 14 N 1.46504 * 109.47171 * 120.00040 * 2 1 3 15 15 C 1.46496 * 119.99769 * 60.00321 * 14 2 1 16 16 C 1.34777 * 120.00052 * 239.99680 * 14 2 1 17 17 O 1.21277 * 119.99592 * 0.02562 * 16 14 2 18 18 C 1.50699 * 119.99869 * 179.97438 * 16 14 2 19 19 H 1.08998 * 115.56368 * 34.31493 * 18 16 14 20 20 C 1.52998 * 117.49759 * 248.62386 * 18 16 14 21 21 C 1.52995 * 59.99976 * 252.51136 * 20 18 16 22 22 H 1.09008 * 117.49578 * 107.51360 * 21 20 18 23 23 C 1.50697 * 117.50143 * 252.50973 * 21 20 18 24 24 C 1.38256 * 119.99821 * 8.58974 * 23 21 20 25 25 C 1.38220 * 120.07154 * 180.02562 * 24 23 21 26 26 C 1.38261 * 120.06621 * 359.97438 * 25 24 23 27 27 C 1.38365 * 120.00133 * 359.74221 * 26 25 24 28 28 F 1.35103 * 120.03378 * 180.25553 * 27 26 25 29 29 C 1.38366 * 120.00152 * 188.60763 * 23 21 20 30 30 F 1.35104 * 120.03627 * 359.95910 * 29 23 21 31 31 H 1.09001 * 109.46993 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47342 * 300.00147 * 1 2 3 33 33 H 1.09002 * 109.47092 * 59.99877 * 1 2 3 34 34 H 1.09003 * 109.47542 * 305.00360 * 4 2 1 35 35 H 1.09010 * 109.47292 * 65.00195 * 4 2 1 36 36 H 0.97005 * 119.99962 * 0.02562 * 5 4 2 37 37 H 0.97008 * 120.00205 * 180.02562 * 9 8 6 38 38 H 1.09005 * 109.47096 * 269.99604 * 15 14 2 39 39 H 1.08997 * 109.47715 * 29.99255 * 15 14 2 40 40 H 1.09005 * 109.47342 * 150.00488 * 15 14 2 41 41 H 1.09004 * 117.50035 * 145.02239 * 20 18 16 42 42 H 1.09004 * 117.50160 * 0.02562 * 20 18 16 43 43 H 1.07996 * 119.96780 * 359.97438 * 24 23 21 44 44 H 1.08000 * 119.96504 * 179.97438 * 25 24 23 45 45 H 1.08000 * 119.99386 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1838 -1.4379 -2.2072 7 1 3.6468 -1.8431 -3.0521 8 6 5.5672 -1.5380 -2.1515 9 7 6.2217 -1.0446 -1.1216 10 14 6.5002 -2.3716 -3.5386 11 1 6.8629 -1.3636 -4.5671 12 1 7.7353 -2.9955 -2.9996 13 1 5.6439 -3.4185 -4.1519 14 7 2.0183 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4279 16 6 2.7932 -0.0357 2.0833 17 8 3.0858 1.1255 1.8916 18 6 3.2951 -0.7459 3.3141 19 1 3.5213 -1.8046 3.1868 20 6 2.7318 -0.3014 4.6653 21 6 4.1703 0.0519 4.2826 22 1 4.3832 1.0907 4.0300 23 6 5.2792 -0.6859 4.9876 24 6 4.9834 -1.7602 5.8061 25 6 5.9992 -2.4377 6.4538 26 6 7.3133 -2.0428 6.2842 27 6 7.6131 -0.9718 5.4611 28 9 8.8974 -0.5886 5.2908 29 6 6.5932 -0.2881 4.8161 30 9 6.8831 0.7613 4.0160 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.6053 -1.7198 -1.2952 35 1 1.7516 -0.1583 -2.1371 36 1 3.9824 -0.4628 -0.4316 37 1 7.1885 -1.1142 -1.0827 38 1 0.7376 -2.1444 1.9993 39 1 1.5294 -2.5969 0.4708 40 1 2.4629 -2.5819 1.9864 41 1 2.5873 -1.0676 5.4271 42 1 1.9978 0.5046 4.6641 43 1 3.9575 -2.0698 5.9402 44 1 5.7661 -3.2764 7.0931 45 1 8.1060 -2.5728 6.7912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496232256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:59 Heat of formation + Delta-G solvation = -76.358824 kcal Electronic energy + Delta-G solvation = -29712.554699 eV Core-core repulsion = 25366.672142 eV Total energy + Delta-G solvation = -4345.882557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.53522 -49.63254 -41.46012 -40.16010 -38.24599 -37.06707 -35.84287 -33.56054 -31.98977 -31.56169 -31.23332 -27.75963 -27.42361 -26.03513 -25.14936 -24.41851 -23.68528 -22.14695 -21.49335 -19.91281 -19.20705 -19.10315 -18.64306 -18.09707 -17.72192 -17.42550 -17.19205 -16.73320 -16.50032 -16.06696 -15.99056 -15.58479 -15.40843 -15.33467 -15.19024 -15.12545 -14.22853 -14.01821 -13.83873 -13.69178 -13.67031 -13.39392 -13.34584 -13.26117 -13.11395 -12.89392 -12.81481 -12.62443 -12.49778 -12.21877 -12.17026 -11.84035 -11.77721 -11.70820 -11.57904 -11.01193 -10.77855 -9.77610 -9.74326 -9.54418 -9.03696 -7.96210 -5.27237 -0.08080 -0.06694 1.41526 1.44836 1.51958 1.53280 2.04142 2.33700 2.52423 2.71064 2.95228 3.26534 3.36559 3.41468 3.56877 3.63709 3.75946 3.87058 3.91333 4.06091 4.10075 4.13386 4.21167 4.28811 4.38595 4.46358 4.66605 4.75067 4.79526 4.81535 4.82982 4.84614 4.92431 4.95482 4.98665 5.03312 5.06925 5.16275 5.22826 5.30930 5.31341 5.44353 5.68316 5.78063 6.21699 6.47517 7.23679 7.28769 8.05962 8.28643 9.26232 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008754 B = 0.004136 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.757804 B = 6767.983277 C = 9008.794387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.128 3.872 3 H 0.060 0.940 4 C 0.141 3.859 5 N -0.744 5.744 6 C -0.243 4.243 7 H 0.081 0.919 8 C -0.078 4.078 9 N -0.970 5.970 10 Si 0.975 3.025 11 H -0.291 1.291 12 H -0.298 1.298 13 H -0.261 1.261 14 N -0.592 5.592 15 C 0.078 3.922 16 C 0.531 3.469 17 O -0.595 6.595 18 C -0.178 4.178 19 H 0.144 0.856 20 C -0.088 4.088 21 C -0.115 4.115 22 H 0.087 0.913 23 C -0.064 4.064 24 C -0.091 4.091 25 C -0.077 4.077 26 C -0.124 4.124 27 C 0.040 3.960 28 F -0.147 7.147 29 C 0.028 3.972 30 F -0.155 7.155 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.028 0.972 36 H 0.370 0.630 37 H 0.247 0.753 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.160 0.840 42 H 0.107 0.893 43 H 0.183 0.817 44 H 0.192 0.808 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.552 -7.847 20.874 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.024 3.976 3 H 0.079 0.921 4 C 0.014 3.986 5 N -0.386 5.386 6 C -0.375 4.375 7 H 0.099 0.901 8 C -0.270 4.270 9 N -0.621 5.621 10 Si 0.804 3.196 11 H -0.218 1.218 12 H -0.225 1.225 13 H -0.185 1.185 14 N -0.322 5.322 15 C -0.064 4.064 16 C 0.321 3.679 17 O -0.477 6.477 18 C -0.198 4.198 19 H 0.161 0.839 20 C -0.125 4.125 21 C -0.134 4.134 22 H 0.106 0.894 23 C -0.065 4.065 24 C -0.109 4.109 25 C -0.095 4.095 26 C -0.143 4.143 27 C 0.021 3.979 28 F -0.126 7.126 29 C 0.008 3.992 30 F -0.134 7.134 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.201 0.799 37 H 0.055 0.945 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.177 0.823 42 H 0.126 0.874 43 H 0.200 0.800 44 H 0.209 0.791 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -11.377 -7.307 20.531 24.584 hybrid contribution 2.076 0.923 -1.525 2.736 sum -9.300 -6.384 19.007 22.102 Atomic orbital electron populations 1.21936 0.90881 1.03813 1.03065 1.21275 0.96307 0.96130 0.83923 0.92120 1.21231 0.84030 0.98004 0.95349 1.42561 1.02109 1.69857 1.24084 1.19667 0.89922 1.28337 0.99589 0.90131 1.25643 0.97607 1.03181 1.00569 1.69909 1.06730 1.52932 1.32539 0.85114 0.77928 0.78190 0.78369 1.21791 1.22473 1.18519 1.47703 1.49689 1.13571 1.21282 1.21971 1.01972 0.79538 1.02874 1.20207 0.77088 0.85977 0.84629 1.90659 1.59241 1.19849 1.77938 1.22389 1.06520 1.00778 0.90131 0.83857 1.23351 0.92203 1.03688 0.93227 1.20767 0.92016 0.98577 1.02041 0.89435 1.19212 0.89708 0.98229 0.99310 1.21517 1.03009 0.92257 0.94080 1.21633 0.89777 0.99871 0.98204 1.21539 1.00716 0.94403 0.97630 1.18164 0.77376 0.99393 1.03009 1.91474 1.35519 1.91014 1.94591 1.18209 0.94744 0.89569 0.96656 1.91478 1.94296 1.55550 1.72080 0.90118 0.91674 0.90408 0.94122 0.95446 0.79895 0.94474 0.88955 0.91353 0.90692 0.82277 0.87419 0.79954 0.79083 0.80929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.19 71.98 0.66 -2.57 16 2 C 0.13 4.45 2.80 44.99 0.13 4.57 16 3 H 0.06 2.59 6.90 -2.39 -0.02 2.57 16 4 C 0.14 5.75 5.50 86.38 0.48 6.23 16 5 N -0.74 -40.29 5.43 -343.44 -1.87 -42.16 16 6 C -0.24 -14.16 9.99 84.03 0.84 -13.32 16 7 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 8 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 9 N -0.97 -64.29 13.06 21.65 0.28 -64.01 16 10 Si 0.98 48.23 29.55 68.60 2.03 50.26 16 11 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 13 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 14 N -0.59 -19.45 2.24 -822.59 -1.85 -21.29 16 15 C 0.08 1.84 9.32 127.77 1.19 3.03 16 16 C 0.53 19.97 7.16 87.66 0.63 20.60 16 17 O -0.60 -28.55 15.59 -3.02 -0.05 -28.60 16 18 C -0.18 -4.90 4.92 -11.54 -0.06 -4.96 16 19 H 0.14 3.47 6.44 -2.39 -0.02 3.45 16 20 C -0.09 -1.54 9.56 30.59 0.29 -1.25 16 21 C -0.12 -3.30 5.31 -11.54 -0.06 -3.36 16 22 H 0.09 3.27 7.39 -2.38 -0.02 3.25 16 23 C -0.06 -1.65 5.61 -19.83 -0.11 -1.76 16 24 C -0.09 -1.32 9.30 22.27 0.21 -1.11 16 25 C -0.08 -0.88 10.04 22.27 0.22 -0.65 16 26 C -0.12 -2.16 10.02 22.31 0.22 -1.94 16 27 C 0.04 1.15 7.31 22.41 0.16 1.31 16 28 F -0.15 -4.77 17.18 44.97 0.77 -4.00 16 29 C 0.03 0.94 7.25 22.41 0.16 1.10 16 30 F -0.16 -6.61 16.53 44.97 0.74 -5.86 16 31 H 0.08 1.53 7.67 -2.39 -0.02 1.51 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.04 1.52 6.88 -2.39 -0.02 1.51 16 35 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.37 22.42 7.06 -92.70 -0.65 21.77 16 37 H 0.25 16.01 8.31 -92.70 -0.77 15.24 16 38 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.07 1.73 6.53 -2.39 -0.02 1.72 16 40 H 0.07 1.67 6.00 -2.38 -0.01 1.66 16 41 H 0.16 1.13 6.18 -2.38 -0.01 1.11 16 42 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.18 1.04 6.02 -2.91 -0.02 1.02 16 44 H 0.19 0.34 8.06 -2.91 -0.02 0.32 16 45 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -89.94 379.74 5.88 -84.06 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.38 Total: 29.93 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 5.43 Total: 1.67 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -3.43 Total: -127.46 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.05 Total: -28.60 kcal Atomic # 9 Polarization: -11.38 SS G_CDS: 1.52 Total: -9.86 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -89.94 5.88 -84.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496232256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.703 kcal (2) G-P(sol) polarization free energy of solvation -89.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds