Wall clock time and date at job start Tue Mar 31 2020 21:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46992 * 2 1 4 4 C 1.52996 * 109.46644 * 119.99756 * 2 1 3 5 5 N 1.46504 * 109.46681 * 174.99857 * 4 2 1 6 6 C 1.36943 * 119.99781 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99788 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99622 * 180.27904 * 6 5 4 9 9 N 1.31622 * 119.99400 * 179.72313 * 8 6 5 10 10 Si 1.86800 * 120.00144 * 359.72086 * 8 6 5 11 11 H 1.48506 * 109.46719 * 90.00417 * 10 8 6 12 12 H 1.48501 * 109.46793 * 210.00071 * 10 8 6 13 13 H 1.48489 * 109.47333 * 330.00315 * 10 8 6 14 14 N 1.46497 * 109.46846 * 239.99871 * 2 1 3 15 15 C 1.46501 * 120.00320 * 299.99604 * 14 2 1 16 16 C 1.34783 * 119.99432 * 120.00518 * 14 2 1 17 17 O 1.21273 * 120.00242 * 359.97438 * 16 14 2 18 18 C 1.50701 * 119.99727 * 179.97438 * 16 14 2 19 19 H 1.09007 * 115.54833 * 34.27563 * 18 16 14 20 20 C 1.52994 * 117.50169 * 248.60793 * 18 16 14 21 21 C 1.52993 * 117.49887 * 179.97438 * 18 16 14 22 22 H 1.09000 * 117.49859 * 359.97438 * 21 18 16 23 23 C 1.50705 * 117.50043 * 214.98314 * 21 18 16 24 24 C 1.38260 * 119.99747 * 299.99984 * 23 21 18 25 25 C 1.38206 * 120.07101 * 179.97438 * 24 23 21 26 26 C 1.38258 * 120.07178 * 359.97438 * 25 24 23 27 27 C 1.38368 * 119.99722 * 359.97438 * 26 25 24 28 28 F 1.35109 * 120.03294 * 179.97438 * 27 26 25 29 29 C 1.38359 * 120.00410 * 119.72178 * 23 21 18 30 30 F 1.35106 * 120.03601 * 0.02656 * 29 23 21 31 31 H 1.09000 * 109.47300 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47210 * 300.00268 * 1 2 3 33 33 H 1.09008 * 109.46692 * 59.99785 * 1 2 3 34 34 H 1.09006 * 109.47179 * 55.00474 * 4 2 1 35 35 H 1.08997 * 109.47540 * 294.99936 * 4 2 1 36 36 H 0.97000 * 120.00410 * 0.02562 * 5 4 2 37 37 H 0.97009 * 119.99492 * 179.97438 * 9 8 6 38 38 H 1.09003 * 109.46535 * 90.00565 * 15 14 2 39 39 H 1.08995 * 109.46963 * 210.00238 * 15 14 2 40 40 H 1.08989 * 109.47150 * 330.00852 * 15 14 2 41 41 H 1.09001 * 117.50039 * 359.97438 * 20 18 16 42 42 H 1.09004 * 117.49904 * 145.01831 * 20 18 16 43 43 H 1.08000 * 119.96380 * 359.97438 * 24 23 21 44 44 H 1.08006 * 119.96838 * 179.97438 * 25 24 23 45 45 H 1.08005 * 120.00001 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1837 -1.4388 2.2068 7 1 3.6466 -1.8439 3.0517 8 6 5.5676 -1.5333 2.1540 9 7 6.2251 -2.1172 3.1334 10 14 6.4966 -0.8320 0.6930 11 1 6.8520 0.5838 0.9658 12 1 7.7358 -1.6194 0.4702 13 1 5.6406 -0.9029 -0.5183 14 7 2.0183 -0.6906 -1.1961 15 6 1.6645 -2.0932 -1.4280 16 6 2.7932 -0.0356 -2.0833 17 8 3.0859 1.1256 -1.8915 18 6 3.2960 -0.7461 -3.3135 19 1 2.6177 -1.4853 -3.7397 20 6 4.7966 -1.0311 -3.4010 21 6 4.1708 0.0519 -4.2823 22 1 4.3823 1.0911 -4.0301 23 6 4.0287 -0.2439 -5.7532 24 6 4.2888 -1.5150 -6.2309 25 6 4.1585 -1.7881 -7.5794 26 6 3.7673 -0.7910 -8.4536 27 6 3.5053 0.4819 -7.9785 28 9 3.1235 1.4570 -8.8322 29 6 3.6325 0.7550 -6.6247 30 9 3.3733 1.9961 -6.1580 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 1.6053 -1.7198 1.2952 35 1 1.7516 -0.1583 2.1370 36 1 3.9824 -0.4622 0.4320 37 1 7.1922 -2.1836 3.0963 38 1 0.7376 -2.1444 -1.9993 39 1 2.4629 -2.5818 -1.9863 40 1 1.5295 -2.5968 -0.4709 41 1 5.4204 -0.7043 -2.5690 42 1 5.1056 -1.9576 -3.8851 43 1 4.5941 -2.2953 -5.5495 44 1 4.3625 -2.7816 -7.9508 45 1 3.6663 -1.0056 -9.5073 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496232257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:02 Heat of formation + Delta-G solvation = -73.702206 kcal Electronic energy + Delta-G solvation = -29633.557095 eV Core-core repulsion = 25287.789737 eV Total energy + Delta-G solvation = -4345.767358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.54953 -49.64105 -41.56955 -40.22620 -38.34623 -37.17694 -35.95541 -33.71836 -32.33784 -31.65462 -31.26281 -27.81946 -27.63564 -26.10468 -25.24138 -24.05780 -23.70326 -22.22133 -21.61675 -20.20281 -19.49454 -19.20665 -18.67475 -18.12488 -17.74533 -17.45050 -17.23784 -16.70408 -16.50768 -16.21467 -16.07488 -15.81152 -15.50724 -15.42298 -15.21777 -14.82717 -14.29842 -14.18348 -14.07863 -13.83909 -13.70391 -13.59471 -13.48757 -13.35836 -13.23191 -12.95339 -12.91243 -12.69060 -12.45018 -12.31752 -12.11532 -11.89385 -11.81597 -11.76684 -11.67323 -11.06585 -10.88892 -9.81511 -9.78287 -9.64320 -9.32638 -8.06730 -5.38475 -0.11940 -0.09939 1.26582 1.35459 1.37599 1.40404 1.90826 2.30017 2.42094 2.66662 2.87049 3.17635 3.25225 3.36986 3.49307 3.52284 3.65949 3.68849 3.85945 3.90684 4.01848 4.06895 4.18194 4.22258 4.32036 4.35775 4.60872 4.71198 4.74063 4.77533 4.79014 4.82262 4.88067 4.89378 4.89944 4.99634 5.02792 5.11692 5.19996 5.27158 5.29403 5.58710 5.72752 5.74070 6.17512 6.37528 7.03334 7.11065 7.80629 7.98769 9.14557 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014023 B = 0.003270 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.258705 B = 8560.368748 C = 9527.069055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.125 3.875 3 H 0.069 0.931 4 C 0.145 3.855 5 N -0.755 5.755 6 C -0.227 4.227 7 H 0.064 0.936 8 C -0.056 4.056 9 N -0.979 5.979 10 Si 0.942 3.058 11 H -0.300 1.300 12 H -0.285 1.285 13 H -0.251 1.251 14 N -0.595 5.595 15 C 0.072 3.928 16 C 0.527 3.473 17 O -0.592 6.592 18 C -0.165 4.165 19 H 0.166 0.834 20 C -0.132 4.132 21 C -0.098 4.098 22 H 0.094 0.906 23 C -0.062 4.062 24 C -0.094 4.094 25 C -0.077 4.077 26 C -0.120 4.120 27 C 0.048 3.952 28 F -0.143 7.143 29 C 0.040 3.960 30 F -0.149 7.149 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.035 0.965 36 H 0.361 0.639 37 H 0.258 0.742 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.156 0.844 43 H 0.171 0.829 44 H 0.186 0.814 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 -4.679 -26.669 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.022 3.978 3 H 0.088 0.912 4 C 0.018 3.982 5 N -0.401 5.401 6 C -0.358 4.358 7 H 0.082 0.918 8 C -0.248 4.248 9 N -0.630 5.630 10 Si 0.771 3.229 11 H -0.227 1.227 12 H -0.211 1.211 13 H -0.176 1.176 14 N -0.326 5.326 15 C -0.070 4.070 16 C 0.317 3.683 17 O -0.473 6.473 18 C -0.186 4.186 19 H 0.183 0.817 20 C -0.169 4.169 21 C -0.117 4.117 22 H 0.112 0.888 23 C -0.063 4.063 24 C -0.112 4.112 25 C -0.094 4.094 26 C -0.139 4.139 27 C 0.028 3.972 28 F -0.122 7.122 29 C 0.020 3.980 30 F -0.128 7.128 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.193 0.807 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.173 0.827 43 H 0.188 0.812 44 H 0.203 0.797 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.968 -4.122 -26.360 28.481 hybrid contribution 0.839 1.675 0.032 1.874 sum -9.129 -2.446 -26.328 27.973 Atomic orbital electron populations 1.21950 0.91165 1.03862 1.03037 1.21332 0.96356 0.96475 0.83676 0.91235 1.21205 0.82942 0.98571 0.95484 1.42693 1.03343 1.70725 1.23303 1.19056 0.89982 1.27852 0.98874 0.91782 1.25325 0.97195 1.01906 1.00348 1.69855 1.07411 1.51094 1.34670 0.85635 0.78753 0.77135 0.81370 1.22719 1.21106 1.17557 1.47809 1.49617 1.13780 1.21417 1.22039 1.02181 0.79358 1.03406 1.20279 0.77505 0.86058 0.84466 1.90665 1.59492 1.19293 1.77848 1.22464 0.96869 1.03785 0.95467 0.81654 1.23384 0.91741 1.00947 1.00825 1.20740 1.04479 0.98162 0.88292 0.88782 1.19041 1.01014 0.93979 0.92250 1.21461 0.97770 0.94554 0.97390 1.21567 0.95552 1.00796 0.91507 1.21527 0.99669 0.89164 1.03490 1.18014 1.05552 0.88379 0.85229 1.91495 1.89123 1.62170 1.69394 1.17937 1.07007 0.81163 0.91915 1.91478 1.92026 1.40075 1.89243 0.90125 0.90237 0.92004 0.93565 0.94719 0.80660 0.93308 0.89582 0.89700 0.90740 0.90222 0.82689 0.81198 0.79683 0.80851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 9.19 71.98 0.66 -2.45 16 2 C 0.13 3.94 2.80 44.99 0.13 4.07 16 3 H 0.07 2.63 6.90 -2.38 -0.02 2.62 16 4 C 0.14 5.40 5.50 86.38 0.48 5.88 16 5 N -0.76 -36.25 5.24 -343.44 -1.80 -38.05 16 6 C -0.23 -13.00 10.47 84.03 0.88 -12.12 16 7 H 0.06 3.95 8.06 -2.91 -0.02 3.92 16 8 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 9 N -0.98 -62.94 13.97 21.65 0.30 -62.64 16 10 Si 0.94 47.37 27.73 68.60 1.90 49.27 16 11 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 12 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 13 H -0.25 -11.43 5.29 99.48 0.53 -10.91 16 14 N -0.60 -17.37 2.24 -822.60 -1.85 -19.22 16 15 C 0.07 1.46 9.06 127.77 1.16 2.61 16 16 C 0.53 17.53 7.16 87.66 0.63 18.16 16 17 O -0.59 -25.30 15.58 -3.01 -0.05 -25.34 16 18 C -0.17 -3.95 4.43 -11.54 -0.05 -4.00 16 19 H 0.17 2.58 7.26 -2.38 -0.02 2.56 16 20 C -0.13 -3.00 9.56 30.60 0.29 -2.71 16 21 C -0.10 -2.46 5.31 -11.54 -0.06 -2.52 16 22 H 0.09 3.09 7.40 -2.39 -0.02 3.07 16 23 C -0.06 -1.22 5.62 -19.83 -0.11 -1.33 16 24 C -0.09 -1.02 9.30 22.27 0.21 -0.82 16 25 C -0.08 -0.52 10.04 22.27 0.22 -0.30 16 26 C -0.12 -1.28 10.02 22.31 0.22 -1.06 16 27 C 0.05 0.94 7.31 22.41 0.16 1.11 16 28 F -0.14 -3.26 17.18 44.97 0.77 -2.49 16 29 C 0.04 0.95 7.25 22.41 0.16 1.11 16 30 F -0.15 -4.58 16.53 44.97 0.74 -3.84 16 31 H 0.08 1.45 7.67 -2.39 -0.02 1.43 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.05 1.61 6.88 -2.38 -0.02 1.59 16 35 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.36 17.64 4.93 -92.71 -0.46 17.18 16 37 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.49 6.64 -2.39 -0.02 1.48 16 40 H 0.07 1.65 6.53 -2.39 -0.02 1.63 16 41 H 0.08 2.40 6.91 -2.39 -0.02 2.38 16 42 H 0.16 2.05 6.18 -2.38 -0.01 2.03 16 43 H 0.17 0.92 6.02 -2.91 -0.02 0.90 16 44 H 0.19 -0.21 8.06 -2.91 -0.02 -0.24 16 45 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 Total: -1.00 -82.83 374.88 5.87 -76.96 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.40 Total: 22.59 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 5.45 Total: 2.76 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -3.34 Total: -119.90 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.05 Total: -25.34 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 1.52 Total: -6.33 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.90 Total: 49.27 kcal Total: -82.83 5.87 -76.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496232257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.259 kcal (2) G-P(sol) polarization free energy of solvation -82.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds