Wall clock time and date at job start Tue Mar 31 2020 20:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47189 * 2 1 4 4 N 1.46505 * 109.47007 * 119.99930 * 2 1 3 5 5 C 1.36936 * 120.00167 * 275.00187 * 4 2 1 6 6 H 1.08001 * 119.99807 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99931 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99964 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00010 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47413 * 89.99505 * 9 7 5 11 11 H 1.48492 * 109.47189 * 209.99815 * 9 7 5 12 12 H 1.48507 * 109.46640 * 329.99943 * 9 7 5 13 13 C 1.53000 * 109.47131 * 239.99854 * 2 1 3 14 14 H 1.08997 * 109.52548 * 299.91837 * 13 2 1 15 15 C 1.53039 * 109.49719 * 60.00418 * 13 2 1 16 16 C 1.53042 * 109.52806 * 181.30679 * 15 13 2 17 17 C 1.53189 * 109.31259 * 298.64423 * 16 15 13 18 18 N 1.46916 * 108.77851 * 54.63028 * 17 16 15 19 19 C 1.34777 * 120.63138 * 126.37348 * 18 17 16 20 20 O 1.21586 * 119.99846 * 354.18211 * 19 18 17 21 21 C 1.47574 * 120.00279 * 174.18859 * 19 18 17 22 22 C 1.39727 * 120.14166 * 306.19012 * 21 19 18 23 23 C 1.37735 * 119.90712 * 179.97438 * 22 21 19 24 24 C 1.38755 * 120.19251 * 359.97438 * 23 22 21 25 25 F 1.35099 * 119.86072 * 180.02562 * 24 23 22 26 26 C 1.38501 * 120.28571 * 359.97438 * 24 23 22 27 27 C 1.38203 * 120.08766 * 359.78716 * 26 24 23 28 28 F 1.35103 * 120.09202 * 180.25742 * 27 26 24 29 29 C 1.46929 * 118.74424 * 306.39232 * 18 17 16 30 30 H 1.09003 * 109.46894 * 60.00187 * 1 2 3 31 31 H 1.09004 * 109.47197 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47230 * 299.99893 * 1 2 3 33 33 H 0.96998 * 119.99969 * 94.99956 * 4 2 1 34 34 H 0.97004 * 119.99439 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.45940 * 61.29011 * 15 13 2 36 36 H 1.08998 * 109.45792 * 301.32110 * 15 13 2 37 37 H 1.09004 * 109.49081 * 58.59253 * 16 15 13 38 38 H 1.08992 * 109.49643 * 178.68818 * 16 15 13 39 39 H 1.08997 * 109.58433 * 174.42696 * 17 16 15 40 40 H 1.09009 * 109.58381 * 294.84428 * 17 16 15 41 41 H 1.08008 * 120.04644 * 359.95467 * 22 21 19 42 42 H 1.08000 * 119.90656 * 179.97438 * 23 22 21 43 43 H 1.07993 * 119.95523 * 180.02562 * 26 24 23 44 44 H 1.08996 * 109.58966 * 173.39390 * 29 18 17 45 45 H 1.08999 * 109.58293 * 293.82617 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3758 6 1 1.8918 1.0403 2.4244 7 6 2.6123 -0.6618 3.5091 8 7 2.9253 -1.9388 3.4499 9 14 2.7899 0.2699 5.1184 10 1 1.5223 0.1777 5.8864 11 1 3.8949 -0.3227 5.9140 12 1 3.0938 1.6954 4.8340 13 6 2.0400 -0.7213 -1.2492 14 1 1.6784 -1.7495 -1.2494 15 6 1.5303 -0.0003 -2.4992 16 6 2.0130 -0.7399 -3.7490 17 6 3.5446 -0.7371 -3.7796 18 7 4.0439 -1.2970 -2.5164 19 6 4.9182 -2.3228 -2.5180 20 8 5.2199 -2.8627 -3.5648 21 6 5.5091 -2.7907 -1.2493 22 6 6.1578 -1.8882 -0.4025 23 6 6.7072 -2.3300 0.7808 24 6 6.6178 -3.6687 1.1346 25 9 7.1586 -4.0948 2.2970 26 6 5.9757 -4.5700 0.3017 27 6 5.4160 -4.1384 -0.8859 28 9 4.7851 -5.0166 -1.6959 29 6 3.5717 -0.7180 -1.2513 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6318 1.1527 34 1 3.2486 -2.3961 4.2420 35 1 1.9126 1.0204 -2.5109 36 1 0.4406 0.0202 -2.4875 37 1 1.6515 -1.7680 -3.7256 38 1 1.6304 -0.2395 -4.6384 39 1 3.8945 -1.3461 -4.6130 40 1 3.9058 0.2850 -3.8942 41 1 6.2286 -0.8456 -0.6756 42 1 7.2089 -1.6325 1.4351 43 1 5.9089 -5.6106 0.5826 44 1 3.9396 -1.3146 -0.4165 45 1 3.9351 0.3056 -1.1598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496445427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:21 Heat of formation + Delta-G solvation = -91.308033 kcal Electronic energy + Delta-G solvation = -30811.401682 eV Core-core repulsion = 26464.870878 eV Total energy + Delta-G solvation = -4346.530804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.93392 -48.91016 -40.42326 -38.45045 -37.62657 -35.31511 -33.12535 -32.25511 -30.94666 -30.46282 -29.76514 -28.21945 -25.67500 -24.11545 -23.49298 -23.27644 -22.69632 -21.11922 -19.68136 -19.34693 -18.11461 -17.52163 -17.09624 -17.07895 -16.24396 -15.80402 -15.65604 -15.20326 -14.99202 -14.87504 -14.67752 -14.38235 -14.30447 -14.00325 -13.81087 -13.68478 -13.11984 -13.00202 -12.89464 -12.73002 -12.39338 -12.31013 -12.02224 -11.85046 -11.48189 -11.35863 -11.15657 -11.00476 -10.92861 -10.76687 -10.58493 -10.41285 -10.23318 -9.90940 -9.80545 -9.62222 -9.03959 -8.96181 -8.70345 -8.50011 -7.00527 -5.80151 -3.09210 0.73453 1.05598 2.61577 2.98027 3.39277 3.45166 3.45269 3.46909 3.86707 4.36079 4.41891 4.53479 4.58331 4.87099 4.89775 4.96844 5.03658 5.11968 5.17172 5.37655 5.51155 5.52920 5.64612 5.66915 5.74889 5.76018 5.83960 5.86516 5.91495 5.97740 6.00799 6.05552 6.10449 6.14982 6.15425 6.25205 6.38492 6.49131 6.56059 6.67576 6.72291 6.85169 7.05192 7.41438 7.66718 8.15094 8.37186 9.49042 10.05316 10.40384 11.41561 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007948 B = 0.006117 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3522.024073 B = 4576.539379 C = 7350.341105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.009 4.009 8 N -0.928 5.928 9 Si 0.900 3.100 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.104 4.104 14 H 0.070 0.930 15 C -0.115 4.115 16 C -0.133 4.133 17 C 0.111 3.889 18 N -0.602 5.602 19 C 0.569 3.431 20 O -0.537 6.537 21 C -0.175 4.175 22 C -0.023 4.023 23 C -0.154 4.154 24 C 0.161 3.839 25 F -0.127 7.127 26 C -0.194 4.194 27 C 0.175 3.825 28 F -0.121 7.121 29 C 0.111 3.889 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.382 0.618 34 H 0.254 0.746 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.102 0.898 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 1.208 -11.400 12.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.365 5.365 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.205 4.205 8 N -0.576 5.576 9 Si 0.732 3.268 10 H -0.219 1.219 11 H -0.218 1.218 12 H -0.209 1.209 13 C -0.124 4.124 14 H 0.089 0.911 15 C -0.153 4.153 16 C -0.171 4.171 17 C -0.011 4.011 18 N -0.334 5.334 19 C 0.356 3.644 20 O -0.414 6.414 21 C -0.180 4.180 22 C -0.042 4.042 23 C -0.172 4.172 24 C 0.141 3.859 25 F -0.105 7.105 26 C -0.214 4.214 27 C 0.155 3.845 28 F -0.099 7.099 29 C -0.010 4.010 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.216 0.784 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.164 0.836 42 H 0.166 0.834 43 H 0.170 0.830 44 H 0.120 0.880 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.535 1.002 -11.806 12.686 hybrid contribution -0.112 -0.088 1.316 1.324 sum 4.423 0.914 -10.489 11.420 Atomic orbital electron populations 1.22476 0.99221 1.00857 0.99956 1.20189 0.91926 0.95272 0.85651 0.93353 1.42440 1.78166 1.10619 1.05318 1.19177 1.36609 0.93798 0.87351 0.91318 1.24679 1.02213 0.95889 0.97748 1.69648 1.50705 1.08480 1.28746 0.86302 0.77320 0.78833 0.84382 1.21865 1.21830 1.20856 1.21769 0.94303 1.00737 0.95634 0.91127 1.21632 1.01137 0.99012 0.93479 1.21915 0.94994 1.01574 0.98666 1.21616 0.94235 0.98726 0.86494 1.48127 1.43384 1.33613 1.08315 1.17973 0.78913 0.79442 0.88026 1.90776 1.61815 1.56122 1.32712 1.19853 1.06925 0.93037 0.98144 1.20908 0.92804 0.99158 0.91303 1.21087 1.03599 0.94212 0.98345 1.17420 0.94159 0.92391 0.81881 1.91547 1.83040 1.90442 1.45448 1.20894 1.03746 1.01963 0.94794 1.17084 0.93389 0.85623 0.88450 1.91560 1.79102 1.67741 1.71529 1.22014 0.94943 0.99384 0.84699 0.94218 0.93613 0.92856 0.78405 0.93574 0.91794 0.91131 0.91583 0.90920 0.89219 0.91406 0.83642 0.83387 0.83016 0.87989 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.14 37.16 0.34 -2.42 16 2 C 0.18 3.18 2.47 -67.93 -0.17 3.01 16 3 H 0.05 0.86 8.08 -51.93 -0.42 0.45 16 4 N -0.72 -16.32 4.52 -53.42 -0.24 -16.56 16 5 C -0.24 -6.07 9.93 -15.06 -0.15 -6.22 16 6 H 0.07 1.73 7.83 -52.49 -0.41 1.31 16 7 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 8 N -0.93 -26.13 13.06 55.49 0.72 -25.41 16 9 Si 0.90 21.35 29.55 -169.99 -5.02 16.33 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C -0.10 -1.55 1.97 -90.51 -0.18 -1.73 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 15 C -0.11 -1.35 4.85 -26.69 -0.13 -1.48 16 16 C -0.13 -1.45 6.08 -26.61 -0.16 -1.62 16 17 C 0.11 1.33 6.44 -3.72 -0.02 1.31 16 18 N -0.60 -8.57 2.97 -174.00 -0.52 -9.09 16 19 C 0.57 9.27 6.88 -12.45 -0.09 9.19 16 20 O -0.54 -10.09 16.28 5.29 0.09 -10.01 16 21 C -0.18 -2.73 4.61 -104.91 -0.48 -3.21 16 22 C -0.02 -0.32 7.77 -39.21 -0.30 -0.62 16 23 C -0.15 -2.13 10.01 -39.57 -0.40 -2.53 16 24 C 0.16 2.40 7.30 -39.29 -0.29 2.11 16 25 F -0.13 -1.94 17.26 2.25 0.04 -1.90 16 26 C -0.19 -2.83 9.99 -39.50 -0.39 -3.23 16 27 C 0.17 2.79 7.27 -38.97 -0.28 2.50 16 28 F -0.12 -2.05 16.66 2.25 0.04 -2.01 16 29 C 0.11 1.64 4.60 -3.72 -0.02 1.62 16 30 H 0.04 0.54 6.40 -51.93 -0.33 0.21 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.38 9.37 7.62 -40.82 -0.31 9.05 16 34 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.14 7.00 -51.93 -0.36 0.78 16 40 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 41 H 0.15 1.68 7.75 -52.48 -0.41 1.28 16 42 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.15 1.90 8.06 -52.49 -0.42 1.47 16 44 H 0.10 1.73 4.90 -51.93 -0.25 1.47 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 371.94 15.07 5.61 5.61 Total: -1.00 -29.77 371.94 -8.30 -38.07 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.19 Total: 8.61 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.82 Total: -3.65 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.03 Total: -51.06 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.08 Total: -3.91 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.77 -8.30 -38.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496445427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.236 kcal (2) G-P(sol) polarization free energy of solvation -29.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds