Wall clock time and date at job start Tue Mar 31 2020 20:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47189 * 2 1 4 4 N 1.46505 * 109.47007 * 119.99930 * 2 1 3 5 5 C 1.36936 * 120.00167 * 275.00187 * 4 2 1 6 6 H 1.08001 * 119.99807 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99931 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99964 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00010 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47413 * 89.99505 * 9 7 5 11 11 H 1.48492 * 109.47189 * 209.99815 * 9 7 5 12 12 H 1.48507 * 109.46640 * 329.99943 * 9 7 5 13 13 C 1.53000 * 109.47131 * 239.99854 * 2 1 3 14 14 H 1.08997 * 109.52548 * 299.91837 * 13 2 1 15 15 C 1.53039 * 109.49719 * 60.00418 * 13 2 1 16 16 C 1.53042 * 109.52806 * 181.30679 * 15 13 2 17 17 C 1.53189 * 109.31259 * 298.64423 * 16 15 13 18 18 N 1.46916 * 108.77851 * 54.63028 * 17 16 15 19 19 C 1.34777 * 120.63138 * 126.37348 * 18 17 16 20 20 O 1.21586 * 119.99846 * 354.18211 * 19 18 17 21 21 C 1.47574 * 120.00279 * 174.18859 * 19 18 17 22 22 C 1.39727 * 120.14166 * 306.19012 * 21 19 18 23 23 C 1.37735 * 119.90712 * 179.97438 * 22 21 19 24 24 C 1.38755 * 120.19251 * 359.97438 * 23 22 21 25 25 F 1.35099 * 119.86072 * 180.02562 * 24 23 22 26 26 C 1.38501 * 120.28571 * 359.97438 * 24 23 22 27 27 C 1.38203 * 120.08766 * 359.78716 * 26 24 23 28 28 F 1.35103 * 120.09202 * 180.25742 * 27 26 24 29 29 C 1.46929 * 118.74424 * 306.39232 * 18 17 16 30 30 H 1.09003 * 109.46894 * 60.00187 * 1 2 3 31 31 H 1.09004 * 109.47197 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47230 * 299.99893 * 1 2 3 33 33 H 0.96998 * 119.99969 * 94.99956 * 4 2 1 34 34 H 0.97004 * 119.99439 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.45940 * 61.29011 * 15 13 2 36 36 H 1.08998 * 109.45792 * 301.32110 * 15 13 2 37 37 H 1.09004 * 109.49081 * 58.59253 * 16 15 13 38 38 H 1.08992 * 109.49643 * 178.68818 * 16 15 13 39 39 H 1.08997 * 109.58433 * 174.42696 * 17 16 15 40 40 H 1.09009 * 109.58381 * 294.84428 * 17 16 15 41 41 H 1.08008 * 120.04644 * 359.95467 * 22 21 19 42 42 H 1.08000 * 119.90656 * 179.97438 * 23 22 21 43 43 H 1.07993 * 119.95523 * 180.02562 * 26 24 23 44 44 H 1.08996 * 109.58966 * 173.39390 * 29 18 17 45 45 H 1.08999 * 109.58293 * 293.82617 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3758 6 1 1.8918 1.0403 2.4244 7 6 2.6123 -0.6618 3.5091 8 7 2.9253 -1.9388 3.4499 9 14 2.7899 0.2699 5.1184 10 1 1.5223 0.1777 5.8864 11 1 3.8949 -0.3227 5.9140 12 1 3.0938 1.6954 4.8340 13 6 2.0400 -0.7213 -1.2492 14 1 1.6784 -1.7495 -1.2494 15 6 1.5303 -0.0003 -2.4992 16 6 2.0130 -0.7399 -3.7490 17 6 3.5446 -0.7371 -3.7796 18 7 4.0439 -1.2970 -2.5164 19 6 4.9182 -2.3228 -2.5180 20 8 5.2199 -2.8627 -3.5648 21 6 5.5091 -2.7907 -1.2493 22 6 6.1578 -1.8882 -0.4025 23 6 6.7072 -2.3300 0.7808 24 6 6.6178 -3.6687 1.1346 25 9 7.1586 -4.0948 2.2970 26 6 5.9757 -4.5700 0.3017 27 6 5.4160 -4.1384 -0.8859 28 9 4.7851 -5.0166 -1.6959 29 6 3.5717 -0.7180 -1.2513 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6318 1.1527 34 1 3.2486 -2.3961 4.2420 35 1 1.9126 1.0204 -2.5109 36 1 0.4406 0.0202 -2.4875 37 1 1.6515 -1.7680 -3.7256 38 1 1.6304 -0.2395 -4.6384 39 1 3.8945 -1.3461 -4.6130 40 1 3.9058 0.2850 -3.8942 41 1 6.2286 -0.8456 -0.6756 42 1 7.2089 -1.6325 1.4351 43 1 5.9089 -5.6106 0.5826 44 1 3.9396 -1.3146 -0.4165 45 1 3.9351 0.3056 -1.1598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496445427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:21 Heat of formation + Delta-G solvation = -106.986059 kcal Electronic energy + Delta-G solvation = -30812.081532 eV Core-core repulsion = 26464.870878 eV Total energy + Delta-G solvation = -4347.210654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.20437 -50.11293 -41.61875 -39.61452 -38.91105 -36.79209 -34.56529 -33.66575 -32.13574 -31.71165 -31.14621 -29.71620 -26.85656 -25.80440 -24.63354 -24.49866 -23.97945 -22.29921 -21.06801 -20.47170 -19.32787 -19.06294 -18.58907 -18.28945 -17.47266 -17.03235 -16.85423 -16.68209 -16.43840 -16.11406 -15.84253 -15.62785 -15.48107 -15.39265 -15.28263 -14.99423 -14.37185 -14.22959 -14.16743 -13.95745 -13.74237 -13.55521 -13.36525 -13.01201 -12.93972 -12.77558 -12.60752 -12.50161 -12.36206 -12.10510 -11.97866 -11.75650 -11.66354 -11.41086 -11.15697 -11.05894 -10.85478 -10.18747 -9.90699 -9.65636 -8.89032 -7.82568 -5.09356 -0.45396 -0.09485 1.36766 1.51239 1.53439 1.59935 1.83671 2.28682 2.62974 2.68725 3.17086 3.25245 3.47129 3.51292 3.73611 3.79179 3.89063 4.00985 4.02049 4.11315 4.17381 4.34047 4.47327 4.54026 4.61068 4.62110 4.70947 4.72886 4.80121 4.88582 4.89325 4.90480 4.92940 4.99303 5.03083 5.08305 5.14595 5.30964 5.37926 5.51202 5.54091 5.57668 5.64565 5.68739 6.20483 6.37528 6.92552 7.45352 8.20963 8.44129 9.39281 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007948 B = 0.006117 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3522.024073 B = 4576.539379 C = 7350.341105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.177 3.823 3 H 0.056 0.944 4 N -0.732 5.732 5 C -0.227 4.227 6 H 0.074 0.926 7 C -0.065 4.065 8 N -0.959 5.959 9 Si 0.954 3.046 10 H -0.298 1.298 11 H -0.301 1.301 12 H -0.269 1.269 13 C -0.095 4.095 14 H 0.048 0.952 15 C -0.108 4.108 16 C -0.126 4.126 17 C 0.105 3.895 18 N -0.594 5.594 19 C 0.565 3.435 20 O -0.568 6.568 21 C -0.185 4.185 22 C -0.018 4.018 23 C -0.153 4.153 24 C 0.148 3.852 25 F -0.131 7.131 26 C -0.194 4.194 27 C 0.153 3.847 28 F -0.133 7.133 29 C 0.117 3.883 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.369 0.631 34 H 0.245 0.755 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.169 0.831 42 H 0.168 0.832 43 H 0.167 0.833 44 H 0.078 0.922 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.902 3.758 -12.468 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.068 3.932 3 H 0.074 0.926 4 N -0.372 5.372 5 C -0.359 4.359 6 H 0.092 0.908 7 C -0.258 4.258 8 N -0.610 5.610 9 Si 0.785 3.215 10 H -0.226 1.226 11 H -0.228 1.228 12 H -0.194 1.194 13 C -0.116 4.116 14 H 0.066 0.934 15 C -0.146 4.146 16 C -0.164 4.164 17 C -0.016 4.016 18 N -0.325 5.325 19 C 0.353 3.647 20 O -0.449 6.449 21 C -0.189 4.189 22 C -0.036 4.036 23 C -0.171 4.171 24 C 0.128 3.872 25 F -0.109 7.109 26 C -0.213 4.213 27 C 0.133 3.867 28 F -0.111 7.111 29 C -0.006 4.006 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.201 0.799 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.187 0.813 42 H 0.186 0.814 43 H 0.185 0.815 44 H 0.096 0.904 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.048 3.613 -12.904 13.998 hybrid contribution -0.032 -0.833 1.595 1.800 sum 4.017 2.780 -11.309 12.319 Atomic orbital electron populations 1.22364 0.98164 1.00343 1.00865 1.20408 0.92487 0.95344 0.84930 0.92612 1.42611 1.78283 1.10119 1.06189 1.19494 1.34191 0.93990 0.88185 0.90771 1.25283 1.03524 0.96594 1.00420 1.69794 1.52690 1.09780 1.28736 0.85426 0.76366 0.78455 0.81225 1.22602 1.22823 1.19377 1.21637 0.94326 0.99580 0.96017 0.93393 1.21613 1.01697 0.99510 0.91764 1.21881 0.93994 1.00907 0.99598 1.21877 0.95055 0.99753 0.84906 1.48166 1.42440 1.32779 1.09118 1.18106 0.79173 0.79638 0.87748 1.90753 1.63176 1.57238 1.33718 1.19999 1.07322 0.93213 0.98377 1.21147 0.91819 0.99918 0.90737 1.21379 1.03071 0.94137 0.98550 1.17609 0.94644 0.93024 0.81909 1.91533 1.83156 1.90558 1.45661 1.21040 1.03149 1.02870 0.94276 1.17315 0.94418 0.85929 0.89035 1.91522 1.79500 1.68132 1.71933 1.21913 0.94828 0.99675 0.84136 0.90520 0.94851 0.94689 0.79888 0.94567 0.89837 0.90182 0.93315 0.87715 0.90171 0.88677 0.81335 0.81449 0.81536 0.90386 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 9.14 71.98 0.66 -4.27 16 2 C 0.18 5.90 2.47 44.99 0.11 6.01 16 3 H 0.06 1.81 8.08 -2.39 -0.02 1.79 16 4 N -0.73 -32.59 4.52 -322.94 -1.46 -34.05 16 5 C -0.23 -11.34 9.93 84.03 0.83 -10.51 16 6 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 7 C -0.07 -3.48 5.50 84.86 0.47 -3.01 16 8 N -0.96 -54.78 13.06 21.65 0.28 -54.50 16 9 Si 0.95 43.74 29.55 68.60 2.03 45.77 16 10 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 11 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 C -0.10 -2.66 1.97 -10.72 -0.02 -2.68 16 14 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 15 C -0.11 -2.14 4.85 30.62 0.15 -1.99 16 16 C -0.13 -2.33 6.08 30.67 0.19 -2.15 16 17 C 0.11 2.24 6.44 86.36 0.56 2.79 16 18 N -0.59 -16.04 2.97 -822.68 -2.44 -18.49 16 19 C 0.57 18.33 6.88 86.71 0.60 18.93 16 20 O -0.57 -21.57 16.28 -3.99 -0.06 -21.63 16 21 C -0.19 -5.79 4.61 -20.05 -0.09 -5.88 16 22 C -0.02 -0.48 7.77 22.51 0.17 -0.30 16 23 C -0.15 -4.15 10.01 22.27 0.22 -3.93 16 24 C 0.15 4.42 7.30 22.46 0.16 4.59 16 25 F -0.13 -4.02 17.26 44.97 0.78 -3.25 16 26 C -0.19 -5.79 9.99 22.32 0.22 -5.57 16 27 C 0.15 5.03 7.27 22.66 0.16 5.20 16 28 F -0.13 -4.67 16.66 44.97 0.75 -3.92 16 29 C 0.12 3.23 4.60 86.36 0.40 3.63 16 30 H 0.08 1.83 6.40 -2.39 -0.02 1.81 16 31 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.37 18.32 7.62 -92.71 -0.71 17.61 16 34 H 0.25 13.97 8.31 -92.71 -0.77 13.19 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.48 6.36 -2.39 -0.02 1.46 16 37 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.91 7.00 -2.39 -0.02 1.90 16 40 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.17 3.59 7.75 -2.91 -0.02 3.57 16 42 H 0.17 3.81 8.06 -2.91 -0.02 3.79 16 43 H 0.17 4.28 8.06 -2.91 -0.02 4.25 16 44 H 0.08 2.60 4.90 -2.39 -0.01 2.59 16 45 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -64.84 371.94 4.98 -59.87 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.32 Total: 29.34 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 4.79 Total: 0.85 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -3.62 Total: -107.03 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.06 Total: -21.63 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 1.53 Total: -7.17 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -64.84 4.98 -59.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496445427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.118 kcal (2) G-P(sol) polarization free energy of solvation -64.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds