Wall clock time and date at job start Tue Mar 31 2020 20:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08991 * 109.47288 * 2 1 4 4 N 1.46501 * 109.47072 * 239.99762 * 2 1 3 5 5 C 1.36933 * 120.00235 * 85.00149 * 4 2 1 6 6 H 1.08003 * 119.99594 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99898 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00054 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99642 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47115 * 60.00381 * 9 7 5 11 11 H 1.48499 * 109.46761 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47334 * 300.00056 * 9 7 5 13 13 C 1.52998 * 109.46900 * 120.00003 * 2 1 3 14 14 H 1.09001 * 109.52525 * 60.07553 * 13 2 1 15 15 C 1.53048 * 109.49774 * 299.99711 * 13 2 1 16 16 C 1.53031 * 109.53872 * 178.68308 * 15 13 2 17 17 C 1.53187 * 109.31307 * 61.36783 * 16 15 13 18 18 N 1.46927 * 108.77670 * 305.36351 * 17 16 15 19 19 C 1.34779 * 120.63000 * 233.63098 * 18 17 16 20 20 O 1.21591 * 119.99647 * 176.50870 * 19 18 17 21 21 C 1.47567 * 120.00252 * 356.51153 * 19 18 17 22 22 C 1.39733 * 120.13973 * 320.33407 * 21 19 18 23 23 C 1.37740 * 119.90544 * 179.78937 * 22 21 19 24 24 C 1.38762 * 120.19103 * 0.48721 * 23 22 21 25 25 F 1.35097 * 119.85983 * 179.76459 * 24 23 22 26 26 C 1.38497 * 120.28003 * 359.73896 * 24 23 22 27 27 C 1.38193 * 120.09725 * 0.02760 * 26 24 23 28 28 F 1.35098 * 120.09498 * 179.97438 * 27 26 24 29 29 C 1.46923 * 118.73744 * 53.60301 * 18 17 16 30 30 H 1.08991 * 109.47288 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46959 * 300.00433 * 1 2 3 32 32 H 1.09001 * 109.46699 * 60.00277 * 1 2 3 33 33 H 0.96999 * 119.99682 * 265.00302 * 4 2 1 34 34 H 0.96998 * 119.99609 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.45551 * 58.66430 * 15 13 2 36 36 H 1.09002 * 109.45886 * 298.70868 * 15 13 2 37 37 H 1.09007 * 109.49859 * 181.31776 * 16 15 13 38 38 H 1.08992 * 109.50167 * 301.41412 * 16 15 13 39 39 H 1.09003 * 109.58760 * 65.15098 * 17 16 15 40 40 H 1.09001 * 109.59084 * 185.43041 * 17 16 15 41 41 H 1.08004 * 120.04777 * 0.02562 * 22 21 19 42 42 H 1.07997 * 119.90444 * 180.22887 * 23 22 21 43 43 H 1.08003 * 119.94923 * 179.97438 * 26 24 23 44 44 H 1.09004 * 109.58574 * 66.18768 * 29 18 17 45 45 H 1.08997 * 109.58524 * 186.45956 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8928 1.0404 -2.4241 7 6 2.6124 -0.6620 -3.5090 8 7 2.9254 -1.9391 -3.4497 9 14 2.7902 0.2697 -5.1183 10 1 3.7447 1.3928 -4.9372 11 1 3.3004 -0.6485 -6.1679 12 1 1.4675 0.8054 -5.5288 13 6 2.0400 -0.7213 1.2492 14 1 1.6783 -1.7495 1.2494 15 6 1.5302 -0.0002 2.4993 16 6 2.0125 -0.7398 3.7492 17 6 3.5441 -0.7368 3.7802 18 7 4.0438 -1.2970 2.5172 19 6 4.9180 -2.3228 2.5193 20 8 5.2753 -2.8192 1.4683 21 6 5.4415 -2.8436 3.7969 22 6 5.7707 -1.9635 4.8311 23 6 6.2549 -2.4552 6.0232 24 6 6.4263 -3.8212 6.1965 25 9 6.9061 -4.2958 7.3668 26 6 6.1070 -4.7002 5.1750 27 6 5.6158 -4.2201 3.9758 28 9 5.3048 -5.0776 2.9792 29 6 3.5718 -0.7181 1.2520 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 -1.1525 34 1 3.2487 -2.3963 -4.2417 35 1 0.4405 0.0205 2.4874 36 1 1.9125 1.0205 2.5110 37 1 1.6296 -0.2391 4.6386 38 1 1.6511 -1.7677 3.7259 39 1 3.9053 0.2852 3.8949 40 1 3.8938 -1.3438 4.6154 41 1 5.6421 -0.8996 4.6973 42 1 6.5058 -1.7752 6.8239 43 1 6.2429 -5.7624 5.3155 44 1 3.9354 0.3054 1.1604 45 1 3.9421 -1.3133 0.4173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496445431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:25 Heat of formation + Delta-G solvation = -82.007005 kcal Electronic energy + Delta-G solvation = -29778.313705 eV Core-core repulsion = 25432.186224 eV Total energy + Delta-G solvation = -4346.127481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.47347 -49.18573 -40.60881 -38.74558 -37.60152 -35.49582 -33.10117 -31.78373 -31.67722 -30.99637 -29.67598 -28.15144 -25.76567 -24.37267 -23.77876 -23.31424 -22.75046 -21.21643 -19.73340 -19.45506 -18.46866 -17.79228 -17.37302 -16.99546 -16.43387 -16.08114 -15.96512 -15.56520 -15.11138 -14.96746 -14.83217 -14.79105 -14.30963 -14.13832 -13.93182 -13.70523 -13.27293 -13.03779 -12.85530 -12.83978 -12.65252 -12.40118 -12.23464 -12.01594 -11.86666 -11.31859 -11.09115 -11.00521 -10.82730 -10.69892 -10.60492 -10.27897 -10.15779 -9.95018 -9.73942 -9.53364 -9.44362 -9.14450 -8.86004 -8.49753 -6.89395 -5.68107 -2.97838 0.23449 0.54968 2.48942 2.86881 3.18860 3.40628 3.48156 3.52312 3.54112 3.92842 4.09509 4.20200 4.37345 4.60361 4.63645 4.72612 4.88082 4.96617 5.17852 5.23294 5.28430 5.31535 5.41124 5.43717 5.50047 5.56372 5.62579 5.67677 5.76647 5.80435 5.91112 6.00615 6.10630 6.19676 6.21598 6.24085 6.43516 6.48386 6.50464 6.70498 6.73754 6.93237 7.11982 7.43086 7.75389 8.18657 8.49210 9.60194 10.17998 10.52274 11.53892 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016224 B = 0.002944 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.442195 B = 9508.509234 C =10613.020083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.181 3.819 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.240 4.240 6 H 0.068 0.932 7 C -0.011 4.011 8 N -0.928 5.928 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.103 4.103 14 H 0.070 0.930 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.093 3.907 18 N -0.602 5.602 19 C 0.553 3.447 20 O -0.509 6.509 21 C -0.171 4.171 22 C -0.034 4.034 23 C -0.172 4.172 24 C 0.149 3.851 25 F -0.128 7.128 26 C -0.201 4.201 27 C 0.185 3.815 28 F -0.109 7.109 29 C 0.123 3.877 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.155 0.845 44 H 0.067 0.933 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 0.699 25.564 25.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.372 4.372 6 H 0.086 0.914 7 C -0.208 4.208 8 N -0.576 5.576 9 Si 0.735 3.265 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.124 4.124 14 H 0.089 0.911 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.030 4.030 18 N -0.335 5.335 19 C 0.339 3.661 20 O -0.384 6.384 21 C -0.176 4.176 22 C -0.053 4.053 23 C -0.191 4.191 24 C 0.129 3.871 25 F -0.106 7.106 26 C -0.220 4.220 27 C 0.164 3.836 28 F -0.087 7.087 29 C 0.002 3.998 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.219 0.781 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.171 0.829 42 H 0.167 0.833 43 H 0.173 0.827 44 H 0.086 0.914 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.779 0.489 24.812 25.102 hybrid contribution 0.113 -0.126 -0.836 0.853 sum 3.892 0.364 23.975 24.292 Atomic orbital electron populations 1.22485 0.99333 1.00806 0.99859 1.20163 0.91830 0.95214 0.85771 0.93520 1.42452 1.78087 1.10775 1.05270 1.19134 1.36916 0.93733 0.87381 0.91367 1.24739 1.02161 0.95924 0.97966 1.69658 1.50458 1.08583 1.28917 0.86320 0.77648 0.78621 0.83873 1.21341 1.21771 1.21409 1.21768 0.94562 1.00614 0.95407 0.91133 1.21635 1.01159 0.99020 0.93488 1.21927 0.94690 1.01699 0.98921 1.22161 0.95262 0.99128 0.86444 1.48069 1.43674 1.33574 1.08199 1.17915 0.79929 0.80222 0.87989 1.90930 1.58127 1.57248 1.32082 1.20211 1.07559 0.92629 0.97158 1.21219 0.93299 1.00428 0.90320 1.21130 1.04569 0.93631 0.99801 1.17473 0.96100 0.91925 0.81565 1.91553 1.85114 1.88985 1.44969 1.21009 1.06453 1.02068 0.92486 1.17245 0.95237 0.86151 0.84979 1.91644 1.89440 1.68783 1.58795 1.21765 0.94054 0.98959 0.85019 0.93622 0.94311 0.92873 0.78150 0.93459 0.91123 0.91798 0.90863 0.91551 0.91007 0.89430 0.82879 0.83291 0.82725 0.91446 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.14 37.16 0.34 -2.55 16 2 C 0.18 3.45 2.48 -67.93 -0.17 3.28 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 4 N -0.72 -18.03 4.52 -53.42 -0.24 -18.27 16 5 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 6 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -28.81 13.06 55.49 0.72 -28.08 16 9 Si 0.90 22.77 29.55 -169.99 -5.02 17.74 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 C -0.10 -1.64 1.97 -90.50 -0.18 -1.82 16 14 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 15 C -0.12 -1.34 4.85 -26.69 -0.13 -1.46 16 16 C -0.13 -1.26 6.08 -26.62 -0.16 -1.42 16 17 C 0.09 0.86 4.88 -3.71 -0.02 0.84 16 18 N -0.60 -8.38 2.97 -173.99 -0.52 -8.90 16 19 C 0.55 8.83 7.20 -12.45 -0.09 8.74 16 20 O -0.51 -10.80 15.66 5.29 0.08 -10.72 16 21 C -0.17 -2.06 5.21 -104.91 -0.55 -2.60 16 22 C -0.03 -0.27 7.33 -39.21 -0.29 -0.56 16 23 C -0.17 -1.15 10.01 -39.57 -0.40 -1.54 16 24 C 0.15 1.20 7.30 -39.29 -0.29 0.92 16 25 F -0.13 -1.05 17.26 2.25 0.04 -1.02 16 26 C -0.20 -1.84 9.99 -39.50 -0.39 -2.23 16 27 C 0.18 2.24 7.24 -38.98 -0.28 1.96 16 28 F -0.11 -1.64 16.23 2.25 0.04 -1.61 16 29 C 0.12 2.07 5.48 -3.72 -0.02 2.05 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.38 10.49 7.63 -40.82 -0.31 10.18 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.07 0.80 6.36 -51.93 -0.33 0.47 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.54 8.12 -51.93 -0.42 0.11 16 40 H 0.09 0.65 4.50 -51.93 -0.23 0.42 16 41 H 0.15 0.90 6.39 -52.48 -0.34 0.57 16 42 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.11 2.37 6.52 -51.93 -0.34 2.03 16 LS Contribution 368.41 15.07 5.55 5.55 Total: -1.00 -33.81 368.41 -8.29 -42.09 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.07 Total: 6.85 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.87 Total: -3.64 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.03 Total: -55.25 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.08 Total: -2.62 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.81 -8.29 -42.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496445431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.913 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds