Wall clock time and date at job start Tue Mar 31 2020 20:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08991 * 109.47288 * 2 1 4 4 N 1.46501 * 109.47072 * 239.99762 * 2 1 3 5 5 C 1.36933 * 120.00235 * 85.00149 * 4 2 1 6 6 H 1.08003 * 119.99594 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99898 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00054 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99642 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47115 * 60.00381 * 9 7 5 11 11 H 1.48499 * 109.46761 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47334 * 300.00056 * 9 7 5 13 13 C 1.52998 * 109.46900 * 120.00003 * 2 1 3 14 14 H 1.09001 * 109.52525 * 60.07553 * 13 2 1 15 15 C 1.53048 * 109.49774 * 299.99711 * 13 2 1 16 16 C 1.53031 * 109.53872 * 178.68308 * 15 13 2 17 17 C 1.53187 * 109.31307 * 61.36783 * 16 15 13 18 18 N 1.46927 * 108.77670 * 305.36351 * 17 16 15 19 19 C 1.34779 * 120.63000 * 233.63098 * 18 17 16 20 20 O 1.21591 * 119.99647 * 176.50870 * 19 18 17 21 21 C 1.47567 * 120.00252 * 356.51153 * 19 18 17 22 22 C 1.39733 * 120.13973 * 320.33407 * 21 19 18 23 23 C 1.37740 * 119.90544 * 179.78937 * 22 21 19 24 24 C 1.38762 * 120.19103 * 0.48721 * 23 22 21 25 25 F 1.35097 * 119.85983 * 179.76459 * 24 23 22 26 26 C 1.38497 * 120.28003 * 359.73896 * 24 23 22 27 27 C 1.38193 * 120.09725 * 0.02760 * 26 24 23 28 28 F 1.35098 * 120.09498 * 179.97438 * 27 26 24 29 29 C 1.46923 * 118.73744 * 53.60301 * 18 17 16 30 30 H 1.08991 * 109.47288 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46959 * 300.00433 * 1 2 3 32 32 H 1.09001 * 109.46699 * 60.00277 * 1 2 3 33 33 H 0.96999 * 119.99682 * 265.00302 * 4 2 1 34 34 H 0.96998 * 119.99609 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.45551 * 58.66430 * 15 13 2 36 36 H 1.09002 * 109.45886 * 298.70868 * 15 13 2 37 37 H 1.09007 * 109.49859 * 181.31776 * 16 15 13 38 38 H 1.08992 * 109.50167 * 301.41412 * 16 15 13 39 39 H 1.09003 * 109.58760 * 65.15098 * 17 16 15 40 40 H 1.09001 * 109.59084 * 185.43041 * 17 16 15 41 41 H 1.08004 * 120.04777 * 0.02562 * 22 21 19 42 42 H 1.07997 * 119.90444 * 180.22887 * 23 22 21 43 43 H 1.08003 * 119.94923 * 179.97438 * 26 24 23 44 44 H 1.09004 * 109.58574 * 66.18768 * 29 18 17 45 45 H 1.08997 * 109.58524 * 186.45956 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8928 1.0404 -2.4241 7 6 2.6124 -0.6620 -3.5090 8 7 2.9254 -1.9391 -3.4497 9 14 2.7902 0.2697 -5.1183 10 1 3.7447 1.3928 -4.9372 11 1 3.3004 -0.6485 -6.1679 12 1 1.4675 0.8054 -5.5288 13 6 2.0400 -0.7213 1.2492 14 1 1.6783 -1.7495 1.2494 15 6 1.5302 -0.0002 2.4993 16 6 2.0125 -0.7398 3.7492 17 6 3.5441 -0.7368 3.7802 18 7 4.0438 -1.2970 2.5172 19 6 4.9180 -2.3228 2.5193 20 8 5.2753 -2.8192 1.4683 21 6 5.4415 -2.8436 3.7969 22 6 5.7707 -1.9635 4.8311 23 6 6.2549 -2.4552 6.0232 24 6 6.4263 -3.8212 6.1965 25 9 6.9061 -4.2958 7.3668 26 6 6.1070 -4.7002 5.1750 27 6 5.6158 -4.2201 3.9758 28 9 5.3048 -5.0776 2.9792 29 6 3.5718 -0.7181 1.2520 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 -1.1525 34 1 3.2487 -2.3963 -4.2417 35 1 0.4405 0.0205 2.4874 36 1 1.9125 1.0205 2.5110 37 1 1.6296 -0.2391 4.6386 38 1 1.6511 -1.7677 3.7259 39 1 3.9053 0.2852 3.8949 40 1 3.8938 -1.3438 4.6154 41 1 5.6421 -0.8996 4.6973 42 1 6.5058 -1.7752 6.8239 43 1 6.2429 -5.7624 5.3155 44 1 3.9354 0.3054 1.1604 45 1 3.9421 -1.3133 0.4173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496445431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:24 Heat of formation + Delta-G solvation = -103.752411 kcal Electronic energy + Delta-G solvation = -29779.256657 eV Core-core repulsion = 25432.186224 eV Total energy + Delta-G solvation = -4347.070432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.19070 -50.12015 -41.67840 -39.68270 -38.84511 -37.00122 -34.73293 -33.20352 -32.56784 -31.78096 -31.15250 -29.72518 -26.86025 -26.00231 -24.73430 -24.49234 -23.75726 -22.36612 -21.14611 -20.55479 -19.26416 -19.14835 -18.63460 -18.23026 -17.37830 -17.03138 -16.80680 -16.74552 -16.45974 -16.25588 -15.82124 -15.63837 -15.54646 -15.42997 -15.28327 -14.92659 -14.49696 -14.26541 -14.05989 -13.94084 -13.85392 -13.54629 -13.42502 -13.05777 -12.99388 -12.74883 -12.65265 -12.45056 -12.36461 -12.17581 -11.99535 -11.80757 -11.66554 -11.41419 -11.21144 -11.02368 -10.90217 -10.18090 -9.97364 -9.63792 -8.98738 -7.90992 -5.19933 -0.55220 -0.14218 1.44397 1.47484 1.48392 1.54365 1.82967 2.28565 2.56834 2.67136 3.16221 3.28589 3.42158 3.45431 3.73177 3.78805 3.85749 3.92573 3.99310 4.13325 4.18520 4.29734 4.43404 4.56100 4.58988 4.60744 4.64024 4.73393 4.77874 4.84593 4.87132 4.91298 4.93822 4.94302 5.04384 5.06311 5.18441 5.29390 5.39118 5.48475 5.50817 5.56028 5.57324 5.64813 6.29419 6.31473 7.01760 7.34445 8.13013 8.34480 9.32473 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016224 B = 0.002944 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.442195 B = 9508.509234 C =10613.020083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.173 3.827 3 H 0.052 0.948 4 N -0.739 5.739 5 C -0.232 4.232 6 H 0.080 0.920 7 C -0.083 4.083 8 N -0.974 5.974 9 Si 0.972 3.028 10 H -0.276 1.276 11 H -0.301 1.301 12 H -0.275 1.275 13 C -0.091 4.091 14 H 0.043 0.957 15 C -0.109 4.109 16 C -0.130 4.130 17 C 0.083 3.917 18 N -0.596 5.596 19 C 0.544 3.456 20 O -0.583 6.583 21 C -0.188 4.188 22 C -0.021 4.021 23 C -0.145 4.145 24 C 0.155 3.845 25 F -0.124 7.124 26 C -0.195 4.195 27 C 0.151 3.849 28 F -0.140 7.140 29 C 0.130 3.870 30 H 0.032 0.968 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.366 0.634 34 H 0.247 0.753 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.050 0.950 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.183 0.817 42 H 0.192 0.808 43 H 0.166 0.834 44 H 0.076 0.924 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.171 3.931 30.045 30.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.064 3.936 3 H 0.070 0.930 4 N -0.378 5.378 5 C -0.364 4.364 6 H 0.097 0.903 7 C -0.275 4.275 8 N -0.625 5.625 9 Si 0.801 3.199 10 H -0.203 1.203 11 H -0.228 1.228 12 H -0.202 1.202 13 C -0.111 4.111 14 H 0.061 0.939 15 C -0.146 4.146 16 C -0.167 4.167 17 C -0.037 4.037 18 N -0.327 5.327 19 C 0.333 3.667 20 O -0.464 6.464 21 C -0.192 4.192 22 C -0.039 4.039 23 C -0.163 4.163 24 C 0.135 3.865 25 F -0.102 7.102 26 C -0.215 4.215 27 C 0.130 3.870 28 F -0.118 7.118 29 C 0.007 3.993 30 H 0.051 0.949 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.197 0.803 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.135 0.865 38 H 0.069 0.931 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.201 0.799 42 H 0.209 0.791 43 H 0.184 0.816 44 H 0.094 0.906 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.347 3.800 29.385 29.818 hybrid contribution 0.232 -1.095 -2.054 2.339 sum 3.579 2.705 27.331 27.696 Atomic orbital electron populations 1.22329 0.97516 1.00400 1.01113 1.20488 0.92935 0.95128 0.85008 0.92990 1.42718 1.78385 1.10117 1.06620 1.19591 1.34417 0.94149 0.88231 0.90254 1.25600 1.03353 0.96803 1.01698 1.69863 1.52865 1.10524 1.29246 0.85233 0.78025 0.77232 0.79434 1.20256 1.22807 1.20151 1.21617 0.93639 0.99383 0.96478 0.93865 1.21632 1.01748 0.99533 0.91736 1.21945 0.94497 1.01028 0.99277 1.22651 0.95437 1.01134 0.84464 1.48153 1.42735 1.32847 1.08961 1.18645 0.79551 0.79859 0.88674 1.90887 1.60856 1.59608 1.35026 1.20033 1.09592 0.93113 0.96445 1.21490 0.92096 1.01066 0.89248 1.21527 1.01639 0.93314 0.99865 1.17577 0.95379 0.92480 0.81084 1.91574 1.84948 1.89102 1.44624 1.21084 1.05626 1.03152 0.91632 1.17629 0.97544 0.86226 0.85567 1.91561 1.90156 1.69744 1.60366 1.21405 0.94768 0.98071 0.85039 0.94873 0.89857 0.94699 0.80294 0.94432 0.90073 0.89840 0.86517 0.93107 0.87568 0.86970 0.79940 0.79056 0.81606 0.90600 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 9.14 71.98 0.66 -4.61 16 2 C 0.17 6.64 2.48 44.99 0.11 6.75 16 3 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 4 N -0.74 -38.62 4.52 -322.94 -1.46 -40.08 16 5 C -0.23 -13.22 9.93 84.03 0.83 -12.39 16 6 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 7 C -0.08 -4.99 5.50 84.86 0.47 -4.53 16 8 N -0.97 -64.02 13.06 21.65 0.28 -63.74 16 9 Si 0.97 48.25 29.55 68.60 2.03 50.27 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.30 -15.31 7.11 99.48 0.71 -14.61 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 C -0.09 -2.91 1.97 -10.72 -0.02 -2.93 16 14 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 15 C -0.11 -2.15 4.85 30.62 0.15 -2.00 16 16 C -0.13 -1.89 6.08 30.67 0.19 -1.70 16 17 C 0.08 1.22 4.88 86.36 0.42 1.64 16 18 N -0.60 -16.57 2.97 -822.64 -2.45 -19.02 16 19 C 0.54 18.35 7.20 86.70 0.62 18.98 16 20 O -0.58 -27.56 15.66 -4.00 -0.06 -27.63 16 21 C -0.19 -4.45 5.21 -20.05 -0.10 -4.55 16 22 C -0.02 -0.25 7.33 22.51 0.17 -0.09 16 23 C -0.15 -1.20 10.01 22.28 0.22 -0.98 16 24 C 0.15 1.98 7.30 22.46 0.16 2.14 16 25 F -0.12 -1.59 17.26 44.97 0.78 -0.82 16 26 C -0.20 -3.40 9.99 22.32 0.22 -3.17 16 27 C 0.15 3.81 7.24 22.66 0.16 3.97 16 28 F -0.14 -4.71 16.23 44.97 0.73 -3.98 16 29 C 0.13 4.57 5.48 86.36 0.47 5.05 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 2.10 6.40 -2.39 -0.02 2.09 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.37 21.61 7.63 -92.71 -0.71 20.90 16 34 H 0.25 15.90 8.31 -92.71 -0.77 15.13 16 35 H 0.08 1.48 6.36 -2.39 -0.02 1.46 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.11 0.94 8.12 -2.39 -0.02 0.92 16 40 H 0.11 1.13 4.50 -2.39 -0.01 1.12 16 41 H 0.18 1.15 6.39 -2.91 -0.02 1.13 16 42 H 0.19 0.10 8.06 -2.91 -0.02 0.08 16 43 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 44 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 45 H 0.05 2.28 6.52 -2.39 -0.02 2.26 16 Total: -1.00 -84.42 368.41 4.91 -79.51 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.32 Total: 23.90 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 4.74 Total: 1.58 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -3.62 Total: -122.84 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.06 Total: -27.63 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 1.51 Total: -4.80 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.27 kcal Total: -84.42 4.91 -79.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496445431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.242 kcal (2) G-P(sol) polarization free energy of solvation -84.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds