Wall clock time and date at job start Tue Mar 31 2020 20:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47114 * 2 1 4 4 N 1.46499 * 109.47008 * 240.00006 * 2 1 3 5 5 C 1.36931 * 119.99971 * 85.00511 * 4 2 1 6 6 H 1.08002 * 119.99985 * 359.97438 * 5 4 2 7 7 C 1.38816 * 120.00235 * 179.97438 * 5 4 2 8 8 N 1.31610 * 120.00130 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99535 * 359.97438 * 7 5 4 10 10 H 1.48492 * 109.47075 * 90.00364 * 9 7 5 11 11 H 1.48499 * 109.46805 * 210.00153 * 9 7 5 12 12 H 1.48496 * 109.47377 * 330.00117 * 9 7 5 13 13 C 1.53001 * 109.46799 * 120.00134 * 2 1 3 14 14 H 1.09001 * 109.52375 * 60.08216 * 13 2 1 15 15 C 1.53041 * 109.49720 * 299.99995 * 13 2 1 16 16 C 1.53040 * 109.53714 * 178.68621 * 15 13 2 17 17 C 1.53193 * 109.31524 * 61.36240 * 16 15 13 18 18 N 1.46921 * 108.77597 * 305.36853 * 17 16 15 19 19 C 1.34778 * 120.63144 * 233.58022 * 18 17 16 20 20 O 1.21565 * 120.00320 * 175.11226 * 19 18 17 21 21 C 1.47701 * 119.99873 * 355.12200 * 19 18 17 22 22 C 1.39656 * 120.14997 * 312.54701 * 21 19 18 23 23 C 1.38069 * 119.84864 * 179.77127 * 22 21 19 24 24 F 1.35098 * 119.92166 * 180.22678 * 23 22 21 25 25 C 1.38659 * 120.16476 * 0.48235 * 23 22 21 26 26 C 1.38185 * 120.31775 * 359.79223 * 25 23 22 27 27 C 1.38315 * 120.14040 * 359.95370 * 26 25 23 28 28 F 1.35107 * 120.08093 * 180.02562 * 27 26 25 29 29 C 1.46928 * 118.74011 * 53.60524 * 18 17 16 30 30 H 1.08997 * 109.46970 * 59.99747 * 1 2 3 31 31 H 1.09005 * 109.47121 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47294 * 299.99755 * 1 2 3 33 33 H 0.96999 * 119.99921 * 264.99601 * 4 2 1 34 34 H 0.97002 * 120.00508 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.45894 * 58.66629 * 15 13 2 36 36 H 1.09002 * 109.46092 * 298.70087 * 15 13 2 37 37 H 1.09000 * 109.49815 * 181.31507 * 16 15 13 38 38 H 1.09005 * 109.50053 * 301.37930 * 16 15 13 39 39 H 1.09002 * 109.58167 * 65.15341 * 17 16 15 40 40 H 1.08998 * 109.59191 * 185.43175 * 17 16 15 41 41 H 1.07994 * 120.07561 * 359.97438 * 22 21 19 42 42 H 1.08000 * 119.84486 * 179.76557 * 25 23 22 43 43 H 1.07998 * 119.93092 * 179.97438 * 26 25 23 44 44 H 1.09000 * 109.58778 * 66.18074 * 29 18 17 45 45 H 1.08998 * 109.58475 * 186.46520 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0404 -2.4242 7 6 2.6124 -0.6617 -3.5090 8 7 2.7377 -0.0052 -4.6428 9 14 3.0578 -2.4739 -3.4248 10 1 1.8612 -3.2931 -3.7441 11 1 4.1335 -2.7652 -4.4062 12 1 3.5330 -2.8038 -2.0571 13 6 2.0400 -0.7213 1.2493 14 1 1.6783 -1.7495 1.2493 15 6 1.5301 -0.0003 2.4992 16 6 2.0125 -0.7399 3.7492 17 6 3.5441 -0.7371 3.7802 18 7 4.0437 -1.2971 2.5172 19 6 4.9187 -2.3223 2.5191 20 8 5.2565 -2.8351 1.4700 21 6 5.4671 -2.8227 3.7960 22 6 5.9654 -1.9269 4.7445 23 6 6.4722 -2.4013 5.9380 24 9 6.9505 -1.5357 6.8585 25 6 6.4965 -3.7641 6.1921 26 6 6.0105 -4.6570 5.2560 27 6 5.4950 -4.1956 4.0583 28 9 5.0196 -5.0696 3.1442 29 6 3.5719 -0.7181 1.2520 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2491 -1.6317 -1.1526 34 1 3.0617 -0.4622 -5.4347 35 1 0.4404 0.0203 2.4874 36 1 1.9125 1.0204 2.5111 37 1 1.6296 -0.2394 4.6386 38 1 1.6506 -1.7679 3.7261 39 1 3.9052 0.2850 3.8950 40 1 3.8939 -1.3440 4.6153 41 1 5.9513 -0.8654 4.5462 42 1 6.8976 -4.1297 7.1258 43 1 6.0328 -5.7172 5.4603 44 1 3.9353 0.3054 1.1605 45 1 3.9420 -1.3133 0.4172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496447520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:39 Heat of formation + Delta-G solvation = -105.538263 kcal Electronic energy + Delta-G solvation = -30015.059242 eV Core-core repulsion = 25667.911369 eV Total energy + Delta-G solvation = -4347.147873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.13550 -50.00338 -41.71486 -39.76143 -38.93112 -37.15413 -34.79775 -33.44130 -32.83036 -31.70418 -31.18409 -30.02303 -26.98475 -26.00255 -24.74824 -24.46583 -23.64505 -22.36085 -21.39877 -20.64520 -19.62663 -18.83877 -18.70934 -18.36711 -17.72745 -17.10257 -16.87981 -16.73620 -16.47393 -16.29538 -15.91092 -15.56388 -15.50631 -15.38472 -15.10130 -14.90763 -14.50491 -14.36467 -14.31286 -14.18370 -13.97924 -13.71683 -13.60885 -13.27364 -13.04641 -12.90004 -12.66422 -12.53438 -12.38765 -12.22001 -11.96833 -11.87275 -11.74594 -11.48228 -11.32173 -11.13245 -11.00535 -10.37274 -9.83192 -9.71488 -9.31854 -8.05600 -5.35547 -0.51621 -0.20104 1.29866 1.35055 1.36865 1.40694 1.73908 2.20279 2.42984 2.93288 2.95568 3.21661 3.27289 3.47516 3.52539 3.74705 3.77934 3.86878 3.91893 4.02120 4.06931 4.21147 4.35914 4.41210 4.54060 4.59139 4.66644 4.70082 4.77485 4.79470 4.81453 4.85744 4.87121 4.90500 4.99030 5.00758 5.12689 5.23885 5.32134 5.40147 5.48734 5.56111 5.60017 5.77193 6.19705 6.20641 6.88545 7.06082 7.84665 8.00603 9.16290 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.003415 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.390932 B = 8197.295418 C = 9297.905008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.176 3.824 3 H 0.053 0.947 4 N -0.755 5.755 5 C -0.215 4.215 6 H 0.067 0.933 7 C -0.057 4.057 8 N -0.981 5.981 9 Si 0.938 3.062 10 H -0.277 1.277 11 H -0.297 1.297 12 H -0.271 1.271 13 C -0.094 4.094 14 H 0.056 0.944 15 C -0.109 4.109 16 C -0.127 4.127 17 C 0.091 3.909 18 N -0.596 5.596 19 C 0.547 3.453 20 O -0.579 6.579 21 C -0.147 4.147 22 C -0.091 4.091 23 C 0.090 3.910 24 F -0.129 7.129 25 C -0.084 4.084 26 C -0.114 4.114 27 C 0.111 3.889 28 F -0.143 7.143 29 C 0.123 3.877 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.358 0.642 34 H 0.256 0.744 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.164 0.836 42 H 0.189 0.811 43 H 0.182 0.818 44 H 0.077 0.923 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.908 -4.926 33.958 34.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.069 3.931 3 H 0.071 0.929 4 N -0.398 5.398 5 C -0.346 4.346 6 H 0.084 0.916 7 C -0.249 4.249 8 N -0.632 5.632 9 Si 0.768 3.232 10 H -0.204 1.204 11 H -0.224 1.224 12 H -0.197 1.197 13 C -0.114 4.114 14 H 0.074 0.926 15 C -0.147 4.147 16 C -0.165 4.165 17 C -0.030 4.030 18 N -0.327 5.327 19 C 0.335 3.665 20 O -0.459 6.459 21 C -0.152 4.152 22 C -0.111 4.111 23 C 0.070 3.930 24 F -0.108 7.108 25 C -0.102 4.102 26 C -0.133 4.133 27 C 0.090 3.910 28 F -0.121 7.121 29 C 0.001 3.999 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.191 0.809 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.132 0.868 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.181 0.819 42 H 0.206 0.794 43 H 0.199 0.801 44 H 0.095 0.905 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.064 -4.982 33.274 33.890 hybrid contribution 0.371 -1.139 -1.517 1.933 sum 4.434 -6.120 31.757 32.644 Atomic orbital electron populations 1.22308 0.96817 1.01061 1.01297 1.20466 0.93290 0.95232 0.84139 0.92924 1.42959 1.79864 1.09468 1.07508 1.19047 1.34011 0.94595 0.86941 0.91556 1.25255 1.02944 1.01056 0.95603 1.69829 1.55250 1.37156 1.01015 0.85657 0.77700 0.82728 0.77149 1.20361 1.22419 1.19705 1.21673 0.93473 0.99995 0.96298 0.92589 1.21631 1.02045 0.99425 0.91593 1.21926 0.93923 1.01355 0.99328 1.22387 0.95713 1.00733 0.84173 1.48184 1.42706 1.32782 1.08994 1.18624 0.79462 0.79811 0.88594 1.90854 1.61569 1.58739 1.34741 1.19620 1.06741 0.93207 0.95593 1.21216 0.97473 1.01223 0.91147 1.17489 0.99974 0.88145 0.87348 1.91567 1.85745 1.69156 1.64283 1.21566 0.97356 0.89844 1.01464 1.21291 0.98395 1.03416 0.90168 1.18150 0.98569 0.85410 0.88846 1.91546 1.85837 1.68388 1.66335 1.21521 0.95029 0.98373 0.85011 0.94881 0.93803 0.89680 0.80947 0.93479 0.89559 0.90168 0.86830 0.92472 0.88455 0.87947 0.81874 0.79353 0.80072 0.90494 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.03 9.14 71.98 0.66 -4.37 16 2 C 0.18 6.45 2.47 44.99 0.11 6.57 16 3 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 4 N -0.76 -36.56 4.33 -322.94 -1.40 -37.96 16 5 C -0.21 -12.51 10.41 84.04 0.87 -11.64 16 6 H 0.07 4.13 8.06 -2.91 -0.02 4.11 16 7 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 8 N -0.98 -65.01 13.97 21.65 0.30 -64.71 16 9 Si 0.94 50.27 27.74 68.60 1.90 52.17 16 10 H -0.28 -14.35 7.11 99.48 0.71 -13.65 16 11 H -0.30 -16.11 7.11 99.48 0.71 -15.40 16 12 H -0.27 -14.36 6.52 99.48 0.65 -13.71 16 13 C -0.09 -2.78 1.97 -10.72 -0.02 -2.80 16 14 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 15 C -0.11 -2.05 4.85 30.62 0.15 -1.90 16 16 C -0.13 -1.80 6.08 30.67 0.19 -1.62 16 17 C 0.09 1.41 5.19 86.36 0.45 1.86 16 18 N -0.60 -15.99 2.97 -822.49 -2.44 -18.44 16 19 C 0.55 17.47 7.03 86.74 0.61 18.08 16 20 O -0.58 -25.39 15.98 -3.92 -0.06 -25.45 16 21 C -0.15 -3.34 4.89 -20.06 -0.10 -3.44 16 22 C -0.09 -1.38 7.47 22.57 0.17 -1.21 16 23 C 0.09 1.03 7.29 22.33 0.16 1.19 16 24 F -0.13 -1.53 17.26 44.97 0.78 -0.76 16 25 C -0.08 -0.65 10.01 22.36 0.22 -0.42 16 26 C -0.11 -1.30 10.01 22.28 0.22 -1.07 16 27 C 0.11 2.37 7.25 22.67 0.16 2.54 16 28 F -0.14 -4.12 16.45 44.97 0.74 -3.38 16 29 C 0.12 4.08 5.48 86.36 0.47 4.55 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.08 2.03 6.40 -2.39 -0.02 2.01 16 33 H 0.36 17.83 5.49 -92.71 -0.51 17.32 16 34 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 35 H 0.09 1.44 6.36 -2.39 -0.02 1.42 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 1.25 5.04 -2.39 -0.01 1.24 16 41 H 0.16 2.00 7.22 -2.91 -0.02 1.98 16 42 H 0.19 0.09 8.06 -2.91 -0.02 0.07 16 43 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 44 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.05 2.30 6.52 -2.39 -0.02 2.28 16 Total: -1.00 -83.18 367.22 5.08 -78.10 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.46 Total: 17.15 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 4.80 Total: 3.27 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -3.54 Total: -121.10 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.06 Total: -25.45 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 1.52 Total: -4.13 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 1.90 Total: 52.17 kcal Total: -83.18 5.08 -78.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496447520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.434 kcal (2) G-P(sol) polarization free energy of solvation -83.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds