Wall clock time and date at job start Tue Mar 31 2020 20:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47012 * 2 1 4 4 N 1.46508 * 109.46874 * 240.00752 * 2 1 3 5 5 C 1.36937 * 120.00064 * 84.99835 * 4 2 1 6 6 H 1.07999 * 119.99923 * 359.97438 * 5 4 2 7 7 C 1.38807 * 119.99994 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99736 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99962 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47079 * 90.00275 * 9 7 5 11 11 H 1.48504 * 109.46647 * 209.99763 * 9 7 5 12 12 H 1.48492 * 109.47127 * 329.99816 * 9 7 5 13 13 C 1.53001 * 109.47570 * 120.00814 * 2 1 3 14 14 H 1.08994 * 109.49671 * 179.97438 * 13 2 1 15 15 C 1.53043 * 109.49293 * 299.99928 * 13 2 1 16 16 C 1.53042 * 109.53542 * 181.31801 * 15 13 2 17 17 C 1.53192 * 109.31157 * 298.63325 * 16 15 13 18 18 N 1.46922 * 108.77533 * 54.63532 * 17 16 15 19 19 C 1.34780 * 120.62952 * 126.36753 * 18 17 16 20 20 O 1.21571 * 119.99575 * 175.58592 * 19 18 17 21 21 C 1.47694 * 120.00124 * 355.31452 * 19 18 17 22 22 C 1.39660 * 120.15296 * 54.60121 * 21 19 18 23 23 C 1.38068 * 119.84972 * 180.02562 * 22 21 19 24 24 F 1.35095 * 119.91686 * 180.02562 * 23 22 21 25 25 C 1.38658 * 120.16712 * 0.02647 * 23 22 21 26 26 C 1.38190 * 120.31051 * 359.97438 * 25 23 22 27 27 C 1.38307 * 120.14762 * 359.71845 * 26 25 23 28 28 F 1.35103 * 120.08264 * 180.29996 * 27 26 25 29 29 C 1.46922 * 118.73966 * 306.64159 * 18 17 16 30 30 H 1.09009 * 109.46991 * 299.99455 * 1 2 3 31 31 H 1.08993 * 109.47529 * 59.99304 * 1 2 3 32 32 H 1.09003 * 109.47012 * 179.97438 * 1 2 3 33 33 H 0.96995 * 119.99568 * 264.99325 * 4 2 1 34 34 H 0.97004 * 119.99705 * 179.97438 * 8 7 5 35 35 H 1.08993 * 109.46067 * 61.29558 * 15 13 2 36 36 H 1.09000 * 109.45023 * 301.32673 * 15 13 2 37 37 H 1.09009 * 109.49669 * 178.68335 * 16 15 13 38 38 H 1.08995 * 109.49962 * 58.58737 * 16 15 13 39 39 H 1.09006 * 109.58461 * 294.84663 * 17 16 15 40 40 H 1.09004 * 109.58565 * 174.42503 * 17 16 15 41 41 H 1.07998 * 120.07736 * 359.97438 * 22 21 19 42 42 H 1.07993 * 119.84626 * 179.97438 * 25 23 22 43 43 H 1.08005 * 119.92199 * 180.02562 * 26 25 23 44 44 H 1.09000 * 109.58855 * 173.14112 * 29 18 17 45 45 H 1.08998 * 109.58978 * 293.57364 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1490 -0.0072 -2.3759 6 1 1.8917 1.0405 -2.4243 7 6 2.6111 -0.6616 -3.5094 8 7 2.9241 -1.9387 -3.4504 9 14 2.7901 0.2707 -5.1183 10 1 4.1528 0.8547 -5.2030 11 1 2.5790 -0.6603 -6.2558 12 1 1.7809 1.3584 -5.1749 13 6 2.0401 -0.7214 1.2491 14 1 3.1300 -0.7220 1.2492 15 6 1.5303 -0.0005 2.4992 16 6 2.0669 -0.7020 3.7490 17 6 1.5536 -2.1450 3.7799 18 7 1.9151 -2.8026 2.5168 19 6 2.5908 -3.9688 2.5186 20 8 2.8140 -4.5435 1.4708 21 6 3.0654 -4.5453 3.7929 22 6 2.1677 -4.7692 4.8390 23 6 2.6182 -5.3080 6.0277 24 9 1.7509 -5.5255 7.0404 25 6 3.9586 -5.6263 6.1848 26 6 4.8527 -5.4077 5.1541 27 6 4.4143 -4.8745 3.9556 28 9 5.2885 -4.6669 2.9466 29 6 1.5313 -2.1618 1.2516 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6316 -1.1528 34 1 3.2467 -2.3961 -4.2427 35 1 0.4406 -0.0207 2.5110 36 1 1.8742 1.0337 2.4874 37 1 1.7226 -0.1742 4.6385 38 1 3.1566 -0.7039 3.7256 39 1 0.4696 -2.1448 3.8947 40 1 2.0113 -2.6779 4.6134 41 1 1.1236 -4.5206 4.7188 42 1 4.3054 -6.0471 7.1169 43 1 5.8953 -5.6583 5.2830 44 1 1.9743 -2.7057 0.4174 45 1 0.4455 -2.1630 1.1560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496447521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:43 Heat of formation + Delta-G solvation = -83.417868 kcal Electronic energy + Delta-G solvation = -29968.569040 eV Core-core repulsion = 25622.380380 eV Total energy + Delta-G solvation = -4346.188660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.34963 -49.15107 -40.61383 -38.84981 -37.69951 -35.49711 -33.14132 -31.94446 -31.89487 -30.43640 -29.71448 -27.87932 -26.01501 -24.59650 -23.96588 -23.31670 -22.91602 -21.28776 -20.07478 -18.68631 -18.03395 -17.87602 -17.53837 -17.14111 -16.71767 -16.18224 -15.82422 -15.59675 -15.00267 -14.81910 -14.73151 -14.68353 -14.57893 -14.14860 -13.82483 -13.76360 -13.43957 -13.09028 -13.02416 -12.79192 -12.75750 -12.42855 -12.33611 -11.88490 -11.83062 -11.53390 -11.16492 -10.98940 -10.83272 -10.63940 -10.46287 -10.26291 -10.22125 -10.03091 -9.81618 -9.59440 -9.47933 -9.00258 -8.86495 -8.52017 -6.90690 -5.68848 -2.98887 0.29282 0.50286 2.45775 2.77422 3.04922 3.47456 3.52008 3.54356 3.69010 3.74590 4.02434 4.24567 4.40873 4.59877 4.61793 4.71496 4.87084 4.95540 5.08727 5.20791 5.30835 5.35249 5.40640 5.44982 5.48218 5.57519 5.61944 5.64087 5.76232 5.82020 5.84904 5.94989 6.06456 6.11855 6.24277 6.25487 6.35411 6.38200 6.55599 6.63213 6.75388 6.89948 7.13647 7.36191 7.75432 8.10068 8.48588 9.59401 10.17168 10.51047 11.53169 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016811 B = 0.003016 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.159287 B = 9280.227051 C =10333.641806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.181 3.819 3 H 0.050 0.950 4 N -0.726 5.726 5 C -0.240 4.240 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.104 4.104 14 H 0.073 0.927 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.097 3.903 18 N -0.599 5.599 19 C 0.554 3.446 20 O -0.507 6.507 21 C -0.126 4.126 22 C -0.099 4.099 23 C 0.085 3.915 24 F -0.132 7.132 25 C -0.108 4.108 26 C -0.128 4.128 27 C 0.138 3.862 28 F -0.116 7.116 29 C 0.116 3.884 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.385 0.615 34 H 0.255 0.745 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.154 0.846 44 H 0.103 0.897 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.124 -4.166 25.730 26.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.068 0.932 4 N -0.368 5.368 5 C -0.372 4.372 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.124 4.124 14 H 0.092 0.908 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.026 4.026 18 N -0.332 5.332 19 C 0.340 3.660 20 O -0.382 6.382 21 C -0.130 4.130 22 C -0.118 4.118 23 C 0.065 3.935 24 F -0.110 7.110 25 C -0.127 4.127 26 C -0.147 4.147 27 C 0.118 3.882 28 F -0.094 7.094 29 C -0.005 4.005 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.170 0.830 42 H 0.168 0.832 43 H 0.171 0.829 44 H 0.121 0.879 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.999 -4.363 24.973 25.371 hybrid contribution 0.166 0.187 -0.878 0.913 sum -0.833 -4.176 24.095 24.468 Atomic orbital electron populations 1.22577 0.99507 1.00855 1.00002 1.20165 0.91840 0.95292 0.85676 0.93249 1.42524 1.78151 1.10820 1.05315 1.19204 1.36801 0.93809 0.87355 0.91257 1.24755 1.02193 0.95941 0.98022 1.69678 1.50586 1.08555 1.28841 0.86228 0.77711 0.78569 0.83890 1.21804 1.21831 1.20849 1.21715 1.01080 0.94135 0.95511 0.90820 1.21631 1.00941 0.99284 0.93414 1.21925 1.01485 0.94853 0.98979 1.22005 1.00421 0.94089 0.86054 1.48085 1.55534 1.21329 1.08273 1.17933 0.78748 0.81491 0.87826 1.90920 1.55536 1.59785 1.31936 1.19917 0.92931 1.04183 0.95979 1.21153 1.01000 0.98995 0.90692 1.17443 0.87762 1.02492 0.85790 1.91542 1.68846 1.92681 1.57980 1.21135 0.91077 1.00069 1.00420 1.21002 1.01723 1.00775 0.91174 1.17650 0.86088 0.98558 0.85913 1.91627 1.67508 1.91992 1.58237 1.21814 1.00209 0.93386 0.85052 0.94231 0.92848 0.93317 0.78042 0.93483 0.91302 0.91501 0.90810 0.91534 0.90905 0.89811 0.83042 0.83221 0.82876 0.87906 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 8.79 37.16 0.33 -2.60 16 2 C 0.18 3.50 2.72 -67.93 -0.18 3.32 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 N -0.73 -18.33 5.04 -53.42 -0.27 -18.60 16 5 C -0.24 -6.75 9.93 -15.06 -0.15 -6.90 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.98 13.06 55.49 0.72 -28.26 16 9 Si 0.90 22.85 29.55 -169.99 -5.02 17.82 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C -0.10 -1.69 2.32 -90.72 -0.21 -1.90 16 14 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 15 C -0.11 -1.37 4.78 -26.69 -0.13 -1.49 16 16 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 17 C 0.10 0.96 5.55 -3.71 -0.02 0.94 16 18 N -0.60 -8.50 2.98 -174.20 -0.52 -9.02 16 19 C 0.55 8.91 6.92 -12.40 -0.09 8.82 16 20 O -0.51 -10.66 16.29 5.30 0.09 -10.57 16 21 C -0.13 -1.54 4.89 -104.92 -0.51 -2.05 16 22 C -0.10 -0.91 7.40 -39.11 -0.29 -1.20 16 23 C 0.08 0.68 7.29 -39.49 -0.29 0.39 16 24 F -0.13 -1.10 17.26 2.25 0.04 -1.06 16 25 C -0.11 -0.72 10.01 -39.44 -0.39 -1.11 16 26 C -0.13 -1.01 10.01 -39.57 -0.40 -1.40 16 27 C 0.14 1.63 7.27 -38.97 -0.28 1.35 16 28 F -0.12 -1.71 16.65 2.25 0.04 -1.68 16 29 C 0.12 1.95 5.19 -3.94 -0.02 1.93 16 30 H 0.04 0.55 6.46 -51.92 -0.34 0.22 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.85 6.32 -51.93 -0.33 0.52 16 33 H 0.38 10.51 6.17 -40.82 -0.25 10.26 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.07 0.77 6.50 -51.93 -0.34 0.43 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.70 4.71 -51.93 -0.24 0.46 16 41 H 0.15 1.17 7.38 -52.49 -0.39 0.78 16 42 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 43 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.10 2.17 5.61 -51.93 -0.29 1.88 16 45 H 0.07 1.17 6.16 -51.93 -0.32 0.85 16 LS Contribution 365.30 15.07 5.51 5.51 Total: -1.00 -34.19 365.30 -8.16 -42.35 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.84 Total: 7.37 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.89 Total: -3.86 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -0.06 Total: -55.87 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.08 Total: -2.74 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.19 -8.16 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496447521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.072 kcal (2) G-P(sol) polarization free energy of solvation -34.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds