Wall clock time and date at job start Tue Mar 31 2020 20:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47012 * 2 1 4 4 N 1.46508 * 109.46874 * 240.00752 * 2 1 3 5 5 C 1.36937 * 120.00064 * 84.99835 * 4 2 1 6 6 H 1.07999 * 119.99923 * 359.97438 * 5 4 2 7 7 C 1.38807 * 119.99994 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99736 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99962 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47079 * 90.00275 * 9 7 5 11 11 H 1.48504 * 109.46647 * 209.99763 * 9 7 5 12 12 H 1.48492 * 109.47127 * 329.99816 * 9 7 5 13 13 C 1.53001 * 109.47570 * 120.00814 * 2 1 3 14 14 H 1.08994 * 109.49671 * 179.97438 * 13 2 1 15 15 C 1.53043 * 109.49293 * 299.99928 * 13 2 1 16 16 C 1.53042 * 109.53542 * 181.31801 * 15 13 2 17 17 C 1.53192 * 109.31157 * 298.63325 * 16 15 13 18 18 N 1.46922 * 108.77533 * 54.63532 * 17 16 15 19 19 C 1.34780 * 120.62952 * 126.36753 * 18 17 16 20 20 O 1.21571 * 119.99575 * 175.58592 * 19 18 17 21 21 C 1.47694 * 120.00124 * 355.31452 * 19 18 17 22 22 C 1.39660 * 120.15296 * 54.60121 * 21 19 18 23 23 C 1.38068 * 119.84972 * 180.02562 * 22 21 19 24 24 F 1.35095 * 119.91686 * 180.02562 * 23 22 21 25 25 C 1.38658 * 120.16712 * 0.02647 * 23 22 21 26 26 C 1.38190 * 120.31051 * 359.97438 * 25 23 22 27 27 C 1.38307 * 120.14762 * 359.71845 * 26 25 23 28 28 F 1.35103 * 120.08264 * 180.29996 * 27 26 25 29 29 C 1.46922 * 118.73966 * 306.64159 * 18 17 16 30 30 H 1.09009 * 109.46991 * 299.99455 * 1 2 3 31 31 H 1.08993 * 109.47529 * 59.99304 * 1 2 3 32 32 H 1.09003 * 109.47012 * 179.97438 * 1 2 3 33 33 H 0.96995 * 119.99568 * 264.99325 * 4 2 1 34 34 H 0.97004 * 119.99705 * 179.97438 * 8 7 5 35 35 H 1.08993 * 109.46067 * 61.29558 * 15 13 2 36 36 H 1.09000 * 109.45023 * 301.32673 * 15 13 2 37 37 H 1.09009 * 109.49669 * 178.68335 * 16 15 13 38 38 H 1.08995 * 109.49962 * 58.58737 * 16 15 13 39 39 H 1.09006 * 109.58461 * 294.84663 * 17 16 15 40 40 H 1.09004 * 109.58565 * 174.42503 * 17 16 15 41 41 H 1.07998 * 120.07736 * 359.97438 * 22 21 19 42 42 H 1.07993 * 119.84626 * 179.97438 * 25 23 22 43 43 H 1.08005 * 119.92199 * 180.02562 * 26 25 23 44 44 H 1.09000 * 109.58855 * 173.14112 * 29 18 17 45 45 H 1.08998 * 109.58978 * 293.57364 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1490 -0.0072 -2.3759 6 1 1.8917 1.0405 -2.4243 7 6 2.6111 -0.6616 -3.5094 8 7 2.9241 -1.9387 -3.4504 9 14 2.7901 0.2707 -5.1183 10 1 4.1528 0.8547 -5.2030 11 1 2.5790 -0.6603 -6.2558 12 1 1.7809 1.3584 -5.1749 13 6 2.0401 -0.7214 1.2491 14 1 3.1300 -0.7220 1.2492 15 6 1.5303 -0.0005 2.4992 16 6 2.0669 -0.7020 3.7490 17 6 1.5536 -2.1450 3.7799 18 7 1.9151 -2.8026 2.5168 19 6 2.5908 -3.9688 2.5186 20 8 2.8140 -4.5435 1.4708 21 6 3.0654 -4.5453 3.7929 22 6 2.1677 -4.7692 4.8390 23 6 2.6182 -5.3080 6.0277 24 9 1.7509 -5.5255 7.0404 25 6 3.9586 -5.6263 6.1848 26 6 4.8527 -5.4077 5.1541 27 6 4.4143 -4.8745 3.9556 28 9 5.2885 -4.6669 2.9466 29 6 1.5313 -2.1618 1.2516 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6316 -1.1528 34 1 3.2467 -2.3961 -4.2427 35 1 0.4406 -0.0207 2.5110 36 1 1.8742 1.0337 2.4874 37 1 1.7226 -0.1742 4.6385 38 1 3.1566 -0.7039 3.7256 39 1 0.4696 -2.1448 3.8947 40 1 2.0113 -2.6779 4.6134 41 1 1.1236 -4.5206 4.7188 42 1 4.3054 -6.0471 7.1169 43 1 5.8953 -5.6583 5.2830 44 1 1.9743 -2.7057 0.4174 45 1 0.4455 -2.1630 1.1560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496447521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:42 Heat of formation + Delta-G solvation = -105.452863 kcal Electronic energy + Delta-G solvation = -29969.524549 eV Core-core repulsion = 25622.380380 eV Total energy + Delta-G solvation = -4347.144170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.13570 -49.99216 -41.72733 -39.80555 -38.92713 -37.01042 -34.77810 -33.32680 -32.80028 -31.35803 -31.16376 -29.43226 -27.07490 -26.28501 -24.84564 -24.78316 -23.79767 -22.46083 -21.21813 -20.00506 -19.35035 -18.78743 -18.70321 -18.35844 -17.74347 -17.08302 -16.88579 -16.71304 -16.46015 -16.10918 -15.87262 -15.53263 -15.50496 -15.46380 -15.33298 -15.01272 -14.50178 -14.31179 -14.12569 -14.02839 -13.90641 -13.68543 -13.40555 -13.12156 -12.93894 -12.85593 -12.70303 -12.51227 -12.32015 -12.13116 -11.93807 -11.81932 -11.79396 -11.45849 -11.22549 -11.08803 -10.94331 -10.34325 -9.80378 -9.68303 -9.02176 -7.93198 -5.23063 -0.46833 -0.19061 1.33972 1.43607 1.46506 1.54860 1.76959 2.20284 2.55191 2.94221 2.97229 3.23153 3.39408 3.52397 3.70250 3.79492 3.83493 3.89239 3.94289 4.03405 4.13569 4.24640 4.36312 4.42105 4.53865 4.61031 4.67116 4.70890 4.78620 4.79419 4.82460 4.84758 4.88010 4.91745 5.08542 5.09638 5.12276 5.22846 5.34835 5.40789 5.46078 5.53176 5.57590 5.67971 6.21794 6.27735 6.90948 7.32479 8.11134 8.32015 9.30278 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016811 B = 0.003016 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.159287 B = 9280.227051 C =10333.641806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 H 0.048 0.952 4 N -0.743 5.743 5 C -0.236 4.236 6 H 0.079 0.921 7 C -0.083 4.083 8 N -0.974 5.974 9 Si 0.974 3.026 10 H -0.288 1.288 11 H -0.299 1.299 12 H -0.265 1.265 13 C -0.092 4.092 14 H 0.041 0.959 15 C -0.108 4.108 16 C -0.129 4.129 17 C 0.089 3.911 18 N -0.595 5.595 19 C 0.546 3.454 20 O -0.577 6.577 21 C -0.144 4.144 22 C -0.093 4.093 23 C 0.093 3.907 24 F -0.128 7.128 25 C -0.085 4.085 26 C -0.113 4.113 27 C 0.105 3.895 28 F -0.146 7.146 29 C 0.124 3.876 30 H 0.084 0.916 31 H 0.033 0.967 32 H 0.042 0.958 33 H 0.369 0.631 34 H 0.248 0.752 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.052 0.948 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.166 0.834 42 H 0.190 0.810 43 H 0.181 0.819 44 H 0.046 0.954 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.360 -2.901 30.068 30.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.066 0.934 4 N -0.384 5.384 5 C -0.368 4.368 6 H 0.097 0.903 7 C -0.275 4.275 8 N -0.625 5.625 9 Si 0.803 3.197 10 H -0.216 1.216 11 H -0.225 1.225 12 H -0.190 1.190 13 C -0.112 4.112 14 H 0.060 0.940 15 C -0.146 4.146 16 C -0.167 4.167 17 C -0.031 4.031 18 N -0.326 5.326 19 C 0.334 3.666 20 O -0.457 6.457 21 C -0.149 4.149 22 C -0.112 4.112 23 C 0.073 3.927 24 F -0.106 7.106 25 C -0.104 4.104 26 C -0.131 4.131 27 C 0.085 3.915 28 F -0.124 7.124 29 C 0.002 3.998 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.201 0.799 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.133 0.867 38 H 0.070 0.930 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.184 0.816 42 H 0.207 0.793 43 H 0.199 0.801 44 H 0.065 0.935 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.279 -3.016 29.401 29.643 hybrid contribution 0.522 -0.200 -2.054 2.128 sum -1.757 -3.217 27.347 27.592 Atomic orbital electron populations 1.22394 0.97085 1.00899 1.01239 1.20480 0.93393 0.94862 0.84897 0.93403 1.42827 1.78549 1.10353 1.06651 1.19661 1.34584 0.94205 0.88304 0.90293 1.25635 1.03241 0.96835 1.01787 1.69883 1.52847 1.10488 1.29286 0.85124 0.77899 0.77409 0.79258 1.21575 1.22540 1.18956 1.21540 0.99079 0.94023 0.96582 0.94029 1.21625 1.02019 0.99310 0.91626 1.21933 1.00678 0.94673 0.99371 1.22426 1.02374 0.94067 0.84241 1.48189 1.54589 1.20831 1.08972 1.18646 0.77888 0.81506 0.88562 1.90873 1.58187 1.61888 1.34781 1.19617 0.93816 1.06402 0.95023 1.21184 1.01065 0.98747 0.90234 1.17461 0.88334 1.01706 0.85195 1.91566 1.68908 1.92540 1.57625 1.21554 0.89992 0.97719 1.01118 1.21284 1.03381 0.99001 0.89458 1.18175 0.85823 1.00648 0.86845 1.91549 1.68383 1.92572 1.59901 1.21492 1.00181 0.93190 0.84980 0.89717 0.94764 0.93860 0.79876 0.94314 0.89310 0.90443 0.86653 0.92951 0.88053 0.87806 0.81623 0.79276 0.80142 0.93528 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.26 8.79 71.98 0.63 -4.62 16 2 C 0.17 6.77 2.72 44.99 0.12 6.89 16 3 H 0.05 1.89 8.08 -2.39 -0.02 1.88 16 4 N -0.74 -39.51 5.04 -322.93 -1.63 -41.14 16 5 C -0.24 -13.63 9.93 84.03 0.83 -12.80 16 6 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 7 C -0.08 -5.05 5.50 84.86 0.47 -4.59 16 8 N -0.97 -64.26 13.06 21.65 0.28 -63.97 16 9 Si 0.97 48.44 29.55 68.60 2.03 50.46 16 10 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 11 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 12 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 13 C -0.09 -3.05 2.32 -10.86 -0.03 -3.07 16 14 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 15 C -0.11 -2.28 4.78 30.62 0.15 -2.13 16 16 C -0.13 -2.10 6.08 30.67 0.19 -1.92 16 17 C 0.09 1.54 5.55 86.36 0.48 2.02 16 18 N -0.59 -17.30 2.98 -823.32 -2.45 -19.75 16 19 C 0.55 18.78 6.92 86.74 0.60 19.38 16 20 O -0.58 -27.04 16.29 -3.94 -0.06 -27.10 16 21 C -0.14 -3.57 4.89 -20.06 -0.10 -3.66 16 22 C -0.09 -1.51 7.40 22.57 0.17 -1.34 16 23 C 0.09 1.15 7.29 22.33 0.16 1.31 16 24 F -0.13 -1.59 17.26 44.97 0.78 -0.81 16 25 C -0.09 -0.77 10.01 22.36 0.22 -0.54 16 26 C -0.11 -1.50 10.01 22.27 0.22 -1.27 16 27 C 0.11 2.52 7.27 22.66 0.16 2.68 16 28 F -0.15 -4.69 16.65 44.97 0.75 -3.94 16 29 C 0.12 4.39 5.19 86.22 0.45 4.83 16 30 H 0.08 2.07 6.46 -2.38 -0.02 2.06 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 1.49 6.32 -2.39 -0.02 1.47 16 33 H 0.37 21.85 6.17 -92.71 -0.57 21.28 16 34 H 0.25 15.93 8.31 -92.71 -0.77 15.16 16 35 H 0.09 1.56 6.50 -2.39 -0.02 1.55 16 36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 1.24 8.14 -2.38 -0.02 1.23 16 40 H 0.10 1.42 4.71 -2.39 -0.01 1.41 16 41 H 0.17 2.12 7.38 -2.91 -0.02 2.10 16 42 H 0.19 0.30 8.06 -2.91 -0.02 0.27 16 43 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.05 2.20 5.61 -2.39 -0.01 2.18 16 45 H 0.09 2.76 6.16 -2.39 -0.01 2.75 16 Total: -1.00 -83.86 365.30 4.89 -78.97 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.47 Total: 26.11 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 4.73 Total: 1.17 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -3.80 Total: -124.86 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.06 Total: -27.10 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 1.53 Total: -4.75 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.46 kcal Total: -83.86 4.89 -78.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496447521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.479 kcal (2) G-P(sol) polarization free energy of solvation -83.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds