Wall clock time and date at job start Tue Mar 31 2020 20:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.47264 * 2 1 4 4 C 1.53006 * 109.47009 * 240.00005 * 2 1 3 5 5 C 1.52995 * 109.46889 * 174.99794 * 4 2 1 6 6 N 1.46500 * 109.47026 * 179.97438 * 5 4 2 7 7 C 1.36935 * 120.00144 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00323 * 0.02562 * 7 6 5 9 9 C 1.38819 * 119.99915 * 180.02562 * 7 6 5 10 10 N 1.31613 * 120.00093 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99821 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47193 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.46940 * 119.99823 * 11 9 7 14 14 H 1.48497 * 109.47204 * 239.99844 * 11 9 7 15 15 N 1.46496 * 109.47468 * 120.00063 * 2 1 3 16 16 C 1.34776 * 119.99940 * 275.00018 * 15 2 1 17 17 O 1.21550 * 120.00033 * 359.97438 * 16 15 2 18 18 C 1.47850 * 120.00185 * 179.97438 * 16 15 2 19 19 C 1.39574 * 120.14431 * 179.97438 * 18 16 15 20 20 C 1.37962 * 119.84981 * 180.02562 * 19 18 16 21 21 C 1.38358 * 120.14613 * 0.02806 * 20 19 18 22 22 P 1.81399 * 119.85210 * 179.97438 * 21 20 19 23 23 C 1.82300 * 109.47008 * 209.99962 * 22 21 20 24 24 C 1.82295 * 109.47272 * 90.00115 * 22 21 20 25 25 O 1.48006 * 109.47080 * 329.99704 * 22 21 20 26 26 C 1.38351 * 120.29322 * 0.23010 * 21 20 19 27 27 C 1.37968 * 120.14217 * 359.48563 * 26 21 20 28 28 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46642 * 300.00367 * 1 2 3 30 30 H 1.09000 * 109.46938 * 59.99633 * 1 2 3 31 31 H 1.09002 * 109.46830 * 294.99836 * 4 2 1 32 32 H 1.08994 * 109.46856 * 55.00208 * 4 2 1 33 33 H 1.08995 * 109.47605 * 300.00033 * 5 4 2 34 34 H 1.09008 * 109.47127 * 60.00257 * 5 4 2 35 35 H 0.97004 * 119.99719 * 0.02562 * 6 5 4 36 36 H 0.97001 * 119.99923 * 180.02562 * 10 9 7 37 37 H 0.97000 * 120.00170 * 94.99575 * 15 2 1 38 38 H 1.08000 * 120.07347 * 0.02562 * 19 18 16 39 39 H 1.08005 * 119.92258 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47243 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.47611 * 300.00206 * 23 22 21 42 42 H 1.09004 * 109.46913 * 60.00370 * 23 22 21 43 43 H 1.09004 * 109.46990 * 299.99834 * 24 22 21 44 44 H 1.09002 * 109.47217 * 59.99880 * 24 22 21 45 45 H 1.09001 * 109.47496 * 180.02562 * 24 22 21 46 46 H 1.08001 * 119.93029 * 179.74467 * 26 21 20 47 47 H 1.08003 * 120.06993 * 180.25123 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 7 4.0532 -1.3044 -2.5096 7 6 5.3953 -1.3413 -2.7790 8 1 6.0938 -0.8612 -2.1097 9 6 5.8580 -1.9957 -3.9124 10 7 5.0068 -2.5812 -4.7278 11 14 7.6887 -2.0454 -4.2803 12 1 8.4271 -1.3174 -3.2173 13 1 8.1467 -3.4574 -4.3236 14 1 7.9476 -1.4005 -5.5926 15 7 2.0184 -0.6906 1.1961 16 6 2.1472 -0.0182 2.3571 17 8 1.8585 1.1612 2.4116 18 6 2.6396 -0.7153 3.5644 19 6 2.7745 -0.0218 4.7681 20 6 3.2351 -0.6781 5.8908 21 6 3.5633 -2.0206 5.8252 22 15 4.1687 -2.8755 7.3062 23 6 5.3006 -4.2168 6.8134 24 6 2.7576 -3.5771 8.2224 25 8 4.8896 -1.9143 8.1706 26 6 3.4369 -2.7125 4.6339 27 6 2.9720 -2.0695 3.5052 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7516 -1.7716 -1.2056 32 1 1.6054 -0.2617 -2.1369 33 1 3.8532 0.4369 -1.3574 34 1 3.9995 -1.0728 -0.4260 35 1 3.4258 -1.7359 -3.1106 36 1 5.3301 -3.0388 -5.5196 37 1 2.2491 -1.6317 1.1526 38 1 2.5190 1.0263 4.8204 39 1 3.3404 -0.1425 6.8228 40 1 5.6648 -4.7303 7.7033 41 1 4.7699 -4.9247 6.1767 42 1 6.1445 -3.7973 6.2656 43 1 2.0808 -2.7750 8.5171 44 1 2.2268 -4.2849 7.5857 45 1 3.1213 -4.0904 9.1125 46 1 3.6987 -3.7593 4.5883 47 1 2.8699 -2.6118 2.5768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497331224.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:12 Heat of formation + Delta-G solvation = -93.484223 kcal Electronic energy + Delta-G solvation = -25990.056180 eV Core-core repulsion = 22250.513373 eV Total energy + Delta-G solvation = -3739.542807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.43180 -39.46945 -37.89836 -36.19179 -34.05193 -33.77352 -32.82574 -32.21687 -31.26537 -29.68439 -29.45458 -28.46379 -26.02165 -25.17956 -23.82921 -23.26069 -22.13611 -21.57611 -19.49173 -18.98844 -17.92274 -17.46699 -16.76378 -16.32325 -16.09394 -15.95788 -15.72157 -15.49528 -15.22726 -15.20450 -14.92489 -14.58190 -14.49467 -14.35869 -14.28275 -14.02776 -13.91065 -13.75536 -13.55519 -13.15345 -13.00933 -12.95033 -12.94170 -12.81959 -12.56925 -12.44948 -12.27698 -12.24629 -12.04312 -11.98182 -11.69435 -11.18124 -10.99840 -10.71613 -10.61556 -10.44779 -10.14779 -10.13347 -9.05642 -8.00389 -5.29544 -0.56916 0.21952 0.72777 1.44514 1.45639 1.55562 1.59759 2.00828 2.51700 2.61687 3.33418 3.47077 3.57379 3.64296 3.78526 3.82275 3.96301 3.99026 4.09459 4.12553 4.20575 4.22941 4.26712 4.33419 4.50103 4.52971 4.58164 4.60209 4.67309 4.70886 4.78382 4.85404 4.91658 4.98272 5.05558 5.13435 5.16004 5.17952 5.20974 5.23209 5.26891 5.44288 5.45086 5.73802 6.22393 6.38222 6.70637 7.03427 7.29162 8.03198 8.27878 9.22980 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010353 B = 0.002476 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.922138 B =11306.519770 C =13265.168463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.150 3.850 3 H 0.070 0.930 4 C -0.118 4.118 5 C 0.153 3.847 6 N -0.745 5.745 7 C -0.248 4.248 8 H 0.070 0.930 9 C -0.072 4.072 10 N -0.966 5.966 11 Si 0.972 3.028 12 H -0.269 1.269 13 H -0.289 1.289 14 H -0.292 1.292 15 N -0.705 5.705 16 C 0.551 3.449 17 O -0.573 6.573 18 C -0.118 4.118 19 C -0.096 4.096 20 C -0.056 4.056 21 C -0.706 4.706 22 P 2.622 2.378 23 C -0.832 4.832 24 C -0.827 4.827 25 O -1.050 7.050 26 C -0.082 4.082 27 C -0.110 4.110 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.006 0.994 34 H 0.022 0.978 35 H 0.376 0.624 36 H 0.253 0.747 37 H 0.410 0.590 38 H 0.135 0.865 39 H 0.168 0.832 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.115 0.885 46 H 0.170 0.830 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.813 -4.794 26.223 28.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.045 3.955 3 H 0.089 0.911 4 C -0.157 4.157 5 C 0.027 3.973 6 N -0.388 5.388 7 C -0.380 4.380 8 H 0.088 0.912 9 C -0.264 4.264 10 N -0.617 5.617 11 Si 0.801 3.199 12 H -0.194 1.194 13 H -0.216 1.216 14 H -0.219 1.219 15 N -0.357 5.357 16 C 0.339 3.661 17 O -0.454 6.454 18 C -0.121 4.121 19 C -0.115 4.115 20 C -0.074 4.074 21 C -0.695 4.695 22 P 2.688 2.312 23 C -0.877 4.877 24 C -0.871 4.871 25 O -1.150 7.150 26 C -0.100 4.100 27 C -0.129 4.129 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.024 0.976 34 H 0.039 0.961 35 H 0.209 0.791 36 H 0.062 0.938 37 H 0.248 0.752 38 H 0.153 0.847 39 H 0.185 0.815 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.134 0.866 46 H 0.187 0.813 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.289 -4.507 25.735 27.729 hybrid contribution 0.346 -1.003 -1.691 1.996 sum -8.944 -5.510 24.043 26.238 Atomic orbital electron populations 1.22083 0.93272 1.03107 1.02606 1.20910 0.95094 0.96499 0.82966 0.91140 1.21907 0.94559 1.01859 0.97331 1.20758 0.93510 0.94202 0.88858 1.42548 1.04507 1.65239 1.26469 1.19607 0.85233 1.27736 1.05416 0.91215 1.25545 1.02003 1.01152 0.97742 1.69800 1.34520 1.41793 1.15568 0.85104 0.80126 0.77146 0.77565 1.19386 1.21584 1.21923 1.46019 1.65970 1.14640 1.09054 1.18641 0.77261 0.86244 0.83994 1.90743 1.52019 1.16975 1.85676 1.20243 1.02486 0.95436 0.93915 1.21600 0.96992 1.00950 0.91933 1.21304 0.93103 0.93548 0.99411 1.33650 1.11065 1.05468 1.19338 0.87961 0.47722 0.49047 0.46440 1.31998 1.19824 1.23541 1.12305 1.31950 1.25154 1.13767 1.16276 1.95039 1.78013 1.69588 1.72374 1.21449 0.95633 1.01338 0.91551 1.21727 0.97496 0.92994 1.00651 0.90964 0.93192 0.90207 0.90049 0.89776 0.97606 0.96052 0.79144 0.93832 0.75184 0.84724 0.81498 0.86550 0.86909 0.87356 0.87090 0.87406 0.86619 0.81282 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.48 71.98 0.68 -2.58 16 2 C 0.15 3.90 2.57 45.00 0.12 4.01 16 3 H 0.07 2.16 7.58 -2.39 -0.02 2.14 16 4 C -0.12 -3.43 4.87 30.59 0.15 -3.28 16 5 C 0.15 6.00 6.15 86.38 0.53 6.53 16 6 N -0.74 -37.30 5.60 -343.46 -1.92 -39.22 16 7 C -0.25 -13.88 9.99 84.04 0.84 -13.04 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 9 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 10 N -0.97 -58.21 13.06 21.65 0.28 -57.93 16 11 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 14 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 15 N -0.71 -17.21 4.48 -445.40 -2.00 -19.20 16 16 C 0.55 15.39 7.74 86.79 0.67 16.06 16 17 O -0.57 -19.99 16.01 -3.87 -0.06 -20.05 16 18 C -0.12 -2.73 5.87 -20.09 -0.12 -2.84 16 19 C -0.10 -2.09 9.60 22.53 0.22 -1.88 16 20 C -0.06 -0.93 9.67 22.23 0.22 -0.72 16 21 C -0.71 -8.94 6.19 22.33 0.14 -8.80 16 22 P 2.62 21.60 5.23 -40.88 -0.21 21.39 16 23 C -0.83 -5.94 10.53 113.37 1.19 -4.75 16 24 C -0.83 -5.26 11.06 113.37 1.25 -4.01 16 25 O -1.05 -18.64 18.40 -41.20 -0.76 -19.40 16 26 C -0.08 -1.02 9.56 22.23 0.21 -0.81 16 27 C -0.11 -1.91 9.54 22.53 0.21 -1.70 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 33 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.02 0.83 7.75 -2.38 -0.02 0.81 16 35 H 0.38 19.68 7.67 -92.70 -0.71 18.97 16 36 H 0.25 14.69 8.31 -92.71 -0.77 13.91 16 37 H 0.41 8.23 6.64 -92.71 -0.62 7.61 16 38 H 0.13 3.04 7.65 -2.91 -0.02 3.02 16 39 H 0.17 2.05 8.03 -2.91 -0.02 2.03 16 40 H 0.12 0.72 8.14 -2.39 -0.02 0.71 16 41 H 0.11 0.30 7.64 -2.39 -0.02 0.28 16 42 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.12 0.62 8.14 -2.39 -0.02 0.61 16 46 H 0.17 0.67 7.25 -2.91 -0.02 0.65 16 47 H 0.15 1.99 6.41 -2.91 -0.02 1.97 16 Total: -1.00 -81.65 404.29 3.79 -77.87 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -0.35 Total: 30.11 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 6.78 Total: -21.43 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -3.64 Total: -116.35 kcal Atomic # 8 Polarization: -38.63 SS G_CDS: -0.82 Total: -39.45 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 15 Polarization: 21.60 SS G_CDS: -0.21 Total: 21.39 kcal Total: -81.65 3.79 -77.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497331224.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.618 kcal (2) G-P(sol) polarization free energy of solvation -81.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds