Wall clock time and date at job start Tue Mar 31 2020 20:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47277 * 2 1 4 4 N 1.46505 * 109.46704 * 239.99938 * 2 1 3 5 5 C 1.36943 * 119.99729 * 85.00082 * 4 2 1 6 6 H 1.07993 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.38809 * 119.99565 * 179.97438 * 5 4 2 8 8 N 1.31619 * 120.00251 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99739 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47254 * 60.00468 * 9 7 5 11 11 H 1.48503 * 109.47179 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47324 * 300.00053 * 9 7 5 13 13 C 1.53001 * 109.47252 * 120.00089 * 2 1 3 14 14 H 1.09000 * 109.51153 * 174.89368 * 13 2 1 15 15 C 1.53287 * 109.51117 * 294.99931 * 13 2 1 16 16 N 1.47157 * 108.38464 * 172.27661 * 15 13 2 17 17 C 1.34774 * 120.98259 * 129.44088 * 16 15 13 18 18 O 1.21284 * 120.00058 * 354.32292 * 17 16 15 19 19 C 1.50698 * 120.00248 * 174.32455 * 17 16 15 20 20 C 1.52999 * 109.46947 * 308.76798 * 19 17 16 21 21 C 1.53005 * 109.46920 * 68.76339 * 19 17 16 22 22 C 1.52992 * 109.47449 * 188.76342 * 19 17 16 23 23 F 1.39902 * 109.47140 * 60.00293 * 22 19 17 24 24 F 1.39898 * 109.47308 * 179.97438 * 22 19 17 25 25 F 1.39904 * 109.47335 * 300.00156 * 22 19 17 26 26 C 1.47146 * 118.03382 * 309.46315 * 16 15 13 27 27 C 1.53301 * 108.38623 * 50.53554 * 26 16 15 28 28 O 1.42962 * 109.26280 * 307.67049 * 27 26 16 29 29 H 1.09003 * 109.47330 * 59.99533 * 1 2 3 30 30 H 1.08998 * 109.47277 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46475 * 300.00075 * 1 2 3 32 32 H 0.96999 * 120.00098 * 265.00419 * 4 2 1 33 33 H 0.96998 * 120.00118 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.68394 * 52.55199 * 15 13 2 35 35 H 1.09006 * 109.71333 * 292.01899 * 15 13 2 36 36 H 1.09000 * 109.47204 * 77.24277 * 20 19 17 37 37 H 1.08999 * 109.46734 * 197.24407 * 20 19 17 38 38 H 1.08998 * 109.46650 * 317.24227 * 20 19 17 39 39 H 1.09000 * 109.46765 * 69.59043 * 21 19 17 40 40 H 1.09000 * 109.47188 * 189.59171 * 21 19 17 41 41 H 1.08999 * 109.47243 * 309.58842 * 21 19 17 42 42 H 1.09004 * 109.68465 * 290.80975 * 26 16 15 43 43 H 1.09008 * 109.68152 * 170.25684 * 26 16 15 44 44 H 1.08997 * 109.51191 * 67.62090 * 27 26 16 45 45 H 1.09001 * 109.51028 * 187.72566 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8918 1.0403 -2.4244 7 6 2.6121 -0.6617 -3.5091 8 7 2.9251 -1.9388 -3.4500 9 14 2.7898 0.2700 -5.1184 10 1 3.7443 1.3930 -4.9374 11 1 3.2988 -0.6484 -6.1685 12 1 1.4670 0.8058 -5.5288 13 6 2.0401 -0.7213 1.2492 14 1 3.1262 -0.8015 1.2053 15 6 1.6351 0.0696 2.4983 16 7 1.9710 -0.7330 3.6850 17 6 2.6785 -0.2039 4.7028 18 8 3.1363 0.9150 4.6060 19 6 2.9009 -1.0027 5.9612 20 6 1.5600 -1.5342 6.4715 21 6 3.8344 -2.1773 5.6614 22 6 3.5341 -0.1076 7.0283 23 9 2.6806 0.9665 7.3025 24 9 3.7400 -0.8489 8.1967 25 9 4.7602 0.3785 6.5617 26 6 1.5121 -2.1304 3.7274 27 6 1.9231 -2.8142 2.4184 28 8 1.4668 -2.0304 1.3133 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 2.2489 -1.6318 -1.1527 33 1 3.2484 -2.3961 -4.2420 34 1 0.5627 0.2640 2.4781 35 1 2.1787 1.0140 2.5278 36 1 1.2563 -2.3911 5.8702 37 1 1.6628 -1.8392 7.5129 38 1 0.8059 -0.7509 6.3950 39 1 4.8382 -1.8020 5.4626 40 1 3.8608 -2.8487 6.5197 41 1 3.4691 -2.7181 4.7884 42 1 0.4273 -2.1576 3.8310 43 1 1.9748 -2.6434 4.5706 44 1 3.0088 -2.9021 2.3788 45 1 1.4754 -3.8069 2.3700 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506851495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:20 Heat of formation + Delta-G solvation = -222.591980 kcal Electronic energy + Delta-G solvation = -31851.893454 eV Core-core repulsion = 27068.900527 eV Total energy + Delta-G solvation = -4782.992928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.21232 -48.68207 -48.65524 -41.98409 -39.85793 -37.40336 -36.70849 -35.55024 -34.27469 -31.85759 -30.06033 -28.73927 -28.53343 -27.39813 -26.45626 -24.96805 -24.56577 -22.73639 -21.20182 -20.83766 -19.52330 -19.43159 -19.28598 -18.55117 -17.88368 -17.43836 -16.97914 -16.69786 -16.54130 -16.18349 -15.93658 -15.72284 -15.51537 -15.25333 -15.09004 -15.06568 -14.87147 -14.82232 -14.72979 -14.57174 -14.54146 -14.00956 -13.71395 -13.64523 -13.45290 -13.24131 -13.12768 -12.93293 -12.78967 -12.53852 -12.43921 -12.36570 -12.21884 -12.14052 -11.78081 -11.63747 -11.52788 -11.20099 -10.92441 -10.85208 -9.68016 -9.00036 -7.91884 -5.20312 1.22221 1.32256 1.47824 1.50584 1.56397 1.76523 2.52338 2.57056 2.75832 2.82136 2.89881 3.34999 3.41897 3.55753 3.57353 3.68606 3.87094 3.92313 3.97921 4.05833 4.27276 4.35245 4.36615 4.43171 4.52778 4.57230 4.58113 4.62107 4.68050 4.77872 4.83313 4.95238 5.04799 5.07475 5.09735 5.17776 5.27093 5.51944 5.63323 6.07211 6.25136 6.30199 6.76907 7.36395 8.12042 8.36789 9.31326 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.002728 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.946289 B =10261.547361 C =10502.784472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.175 3.825 3 H 0.055 0.945 4 N -0.732 5.732 5 C -0.242 4.242 6 H 0.075 0.925 7 C -0.075 4.075 8 N -0.968 5.968 9 Si 0.971 3.029 10 H -0.279 1.279 11 H -0.296 1.296 12 H -0.278 1.278 13 C 0.092 3.908 14 H 0.039 0.961 15 C 0.092 3.908 16 N -0.599 5.599 17 C 0.523 3.477 18 O -0.567 6.567 19 C -0.123 4.123 20 C -0.160 4.160 21 C -0.161 4.161 22 C 0.468 3.532 23 F -0.186 7.186 24 F -0.170 7.170 25 F -0.186 7.186 26 C 0.050 3.950 27 C 0.033 3.967 28 O -0.380 6.380 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.376 0.624 33 H 0.250 0.750 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.142 0.858 44 H 0.049 0.951 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.999 -4.635 26.172 26.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.066 3.934 3 H 0.073 0.927 4 N -0.372 5.372 5 C -0.373 4.373 6 H 0.093 0.907 7 C -0.267 4.267 8 N -0.619 5.619 9 Si 0.800 3.200 10 H -0.206 1.206 11 H -0.222 1.222 12 H -0.204 1.204 13 C 0.033 3.967 14 H 0.057 0.943 15 C -0.031 4.031 16 N -0.331 5.331 17 C 0.310 3.690 18 O -0.445 6.445 19 C -0.127 4.127 20 C -0.217 4.217 21 C -0.218 4.218 22 C 0.414 3.586 23 F -0.168 7.168 24 F -0.151 7.151 25 F -0.168 7.168 26 C -0.070 4.070 27 C -0.044 4.044 28 O -0.298 6.298 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.208 0.792 33 H 0.059 0.941 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.142 0.858 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.135 0.865 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.159 0.841 44 H 0.067 0.933 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.881 -3.942 25.886 26.471 hybrid contribution 0.835 0.639 -0.941 1.411 sum -3.046 -3.302 24.946 25.347 Atomic orbital electron populations 1.22207 0.96728 1.01308 1.00464 1.20434 0.94013 0.94415 0.84562 0.92690 1.42506 1.78361 1.10467 1.05914 1.19604 1.35105 0.94207 0.88415 0.90676 1.25523 1.02959 0.96882 1.01339 1.69821 1.52495 1.10156 1.29391 0.85253 0.77945 0.77306 0.79507 1.20572 1.22215 1.20408 1.22530 0.95960 0.83979 0.94273 0.94290 1.22300 1.02592 0.95023 0.83139 1.47981 1.53562 1.14012 1.17538 1.20314 0.77537 0.86321 0.84817 1.90793 1.50343 1.21590 1.81804 1.22116 1.02742 0.97071 0.90816 1.22438 0.90608 1.03813 1.04815 1.22318 0.97952 0.95017 1.06495 1.20091 0.76600 0.79588 0.82335 1.93174 1.70551 1.58631 1.94418 1.93180 1.95037 1.76262 1.50612 1.93186 1.45963 1.89097 1.88538 1.23483 1.03072 0.79878 1.00589 1.23307 0.99752 0.96183 0.85138 1.88094 1.67653 1.25560 1.48512 0.94626 0.93236 0.91053 0.79190 0.94109 0.88224 0.89584 0.85841 0.88207 0.91129 0.91767 0.86491 0.87625 0.87534 0.84123 0.93285 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 9.06 71.98 0.65 -4.47 16 2 C 0.17 6.87 2.77 44.99 0.12 6.99 16 3 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 4 N -0.73 -37.37 5.10 -322.93 -1.65 -39.01 16 5 C -0.24 -13.53 9.93 84.03 0.83 -12.70 16 6 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 7 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 8 N -0.97 -59.72 13.06 21.65 0.28 -59.43 16 9 Si 0.97 46.58 29.55 68.60 2.03 48.60 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 C 0.09 3.00 2.60 30.69 0.08 3.08 16 14 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 15 C 0.09 2.45 5.84 86.35 0.50 2.95 16 16 N -0.60 -12.70 3.00 -817.34 -2.45 -15.15 16 17 C 0.52 12.53 6.17 87.66 0.54 13.07 16 18 O -0.57 -19.01 14.35 -3.04 -0.04 -19.05 16 19 C -0.12 -1.95 0.32 -52.93 -0.02 -1.97 16 20 C -0.16 -1.33 7.64 71.98 0.55 -0.78 16 21 C -0.16 -1.72 7.86 71.98 0.57 -1.16 16 22 C 0.47 9.85 1.96 71.98 0.14 9.99 16 23 F -0.19 -4.60 16.33 44.97 0.73 -3.87 16 24 F -0.17 -2.88 16.21 44.97 0.73 -2.16 16 25 F -0.19 -4.96 15.53 44.97 0.70 -4.26 16 26 C 0.05 0.65 4.28 86.36 0.37 1.02 16 27 C 0.03 0.62 6.97 72.08 0.50 1.13 16 28 O -0.38 -11.49 9.26 -148.98 -1.38 -12.87 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.80 7.56 -2.39 -0.02 1.78 16 31 H 0.07 1.93 6.42 -2.39 -0.02 1.92 16 32 H 0.38 20.84 7.59 -92.71 -0.70 20.14 16 33 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 34 H 0.10 2.34 6.28 -2.39 -0.01 2.32 16 35 H 0.09 2.59 7.06 -2.38 -0.02 2.57 16 36 H 0.12 0.31 4.99 -2.39 -0.01 0.30 16 37 H 0.10 0.55 7.39 -2.39 -0.02 0.53 16 38 H 0.07 0.75 8.02 -2.39 -0.02 0.73 16 39 H 0.06 0.94 7.55 -2.39 -0.02 0.92 16 40 H 0.12 0.58 8.04 -2.39 -0.02 0.57 16 41 H 0.11 0.83 5.25 -2.39 -0.01 0.81 16 42 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.14 0.85 2.53 -2.38 -0.01 0.85 16 44 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -76.20 358.22 4.60 -71.60 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.34 Total: 22.32 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 5.32 Total: 13.28 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -3.82 Total: -113.60 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -1.42 Total: -31.92 kcal Atomic # 9 Polarization: -12.45 SS G_CDS: 2.16 Total: -10.29 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -76.20 4.60 -71.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506851495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.988 kcal (2) G-P(sol) polarization free energy of solvation -76.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds