Wall clock time and date at job start Tue Mar 31 2020 20:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47537 * 2 1 4 4 N 1.46500 * 109.46934 * 120.00128 * 2 1 3 5 5 C 1.36940 * 120.00081 * 274.99898 * 4 2 1 6 6 H 1.07995 * 119.99524 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99988 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00528 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99811 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47192 * 60.00336 * 9 7 5 11 11 H 1.48504 * 109.47197 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47446 * 300.00086 * 9 7 5 13 13 C 1.53004 * 109.47116 * 239.99520 * 2 1 3 14 14 H 1.08997 * 109.51322 * 185.10383 * 13 2 1 15 15 C 1.53296 * 109.50999 * 65.00565 * 13 2 1 16 16 N 1.47145 * 108.38720 * 187.72258 * 15 13 2 17 17 C 1.34779 * 120.98683 * 230.51606 * 16 15 13 18 18 O 1.21282 * 119.99257 * 354.91073 * 17 16 15 19 19 C 1.50694 * 120.00303 * 174.90678 * 17 16 15 20 20 C 1.52998 * 109.47498 * 300.65816 * 19 17 16 21 21 C 1.53003 * 109.46839 * 60.65887 * 19 17 16 22 22 C 1.53005 * 109.46849 * 180.65513 * 19 17 16 23 23 F 1.39898 * 109.47307 * 60.00441 * 22 19 17 24 24 F 1.39908 * 109.46880 * 180.02562 * 22 19 17 25 25 F 1.39893 * 109.47330 * 300.00223 * 22 19 17 26 26 C 1.47158 * 118.03619 * 50.53364 * 16 15 13 27 27 C 1.53302 * 108.38114 * 309.46653 * 26 16 15 28 28 O 1.42955 * 109.55667 * 305.23495 * 13 2 1 29 29 H 1.09002 * 109.47459 * 300.00166 * 1 2 3 30 30 H 1.09004 * 109.46664 * 59.99706 * 1 2 3 31 31 H 1.09001 * 109.47403 * 179.97438 * 1 2 3 32 32 H 0.97008 * 120.00291 * 94.99077 * 4 2 1 33 33 H 0.96995 * 120.00617 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.68379 * 307.44681 * 15 13 2 35 35 H 1.08999 * 109.68027 * 67.99679 * 15 13 2 36 36 H 1.08996 * 109.47086 * 44.03844 * 20 19 17 37 37 H 1.09000 * 109.47122 * 164.03798 * 20 19 17 38 38 H 1.08997 * 109.47010 * 284.03860 * 20 19 17 39 39 H 1.09002 * 109.46894 * 69.69901 * 21 19 17 40 40 H 1.09001 * 109.47033 * 189.69323 * 21 19 17 41 41 H 1.08990 * 109.47039 * 309.69768 * 21 19 17 42 42 H 1.09000 * 109.68345 * 189.74836 * 26 16 15 43 43 H 1.08997 * 109.71022 * 69.20438 * 26 16 15 44 44 H 1.08997 * 109.51495 * 292.37659 * 27 26 16 45 45 H 1.08999 * 109.54865 * 172.25068 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8918 1.0402 2.4243 7 6 2.6112 -0.6621 3.5093 8 7 2.9232 -1.9394 3.4505 9 14 2.7903 0.2700 5.1182 10 1 1.4683 0.8078 5.5285 11 1 3.2979 -0.6488 6.1687 12 1 3.7463 1.3916 4.9368 13 6 2.0400 -0.7214 -1.2492 14 1 3.1261 -0.8016 -1.2054 15 6 1.6350 0.0696 -2.4984 16 7 1.9709 -0.7330 -3.6850 17 6 2.6777 -0.2038 -4.7033 18 8 2.9674 0.9739 -4.6926 19 6 3.1081 -1.0752 -5.8549 20 6 3.9856 -2.2144 -5.3323 21 6 1.8721 -1.6581 -6.5431 22 6 3.9034 -0.2380 -6.8586 23 9 5.0336 0.2950 -6.2294 24 9 4.3025 -1.0469 -7.9280 25 9 3.1011 0.8036 -7.3364 26 6 1.5119 -2.1305 -3.7275 27 6 1.9229 -2.8142 -2.4184 28 8 1.4668 -2.0294 -1.3140 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2488 -1.6319 1.1527 33 1 3.2465 -2.3967 4.2425 34 1 0.5627 0.2640 -2.4782 35 1 2.1792 1.0136 -2.5275 36 1 3.5393 -2.6323 -4.4300 37 1 4.0631 -2.9915 -6.0928 38 1 4.9796 -1.8310 -5.1020 39 1 1.3371 -0.8633 -7.0630 40 1 2.1804 -2.4183 -7.2608 41 1 1.2183 -2.1076 -5.7958 42 1 1.9747 -2.6435 -4.5705 43 1 0.4272 -2.1582 -3.8312 44 1 3.0086 -2.9021 -2.3788 45 1 1.4753 -3.8069 -2.3692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506851496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:25 Heat of formation + Delta-G solvation = -197.498842 kcal Electronic energy + Delta-G solvation = -31897.123214 eV Core-core repulsion = 27115.218407 eV Total energy + Delta-G solvation = -4781.904807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.32817 -47.81984 -47.71667 -41.07719 -38.71977 -36.38646 -35.29686 -34.55569 -32.49447 -30.41682 -28.66508 -28.11196 -27.40704 -26.59426 -24.92071 -23.70290 -23.36839 -21.70244 -19.98152 -19.71074 -18.63817 -18.54303 -17.75458 -17.25217 -16.87729 -16.29125 -15.90457 -15.73895 -15.46472 -14.94423 -14.80188 -14.56843 -14.43187 -14.16910 -14.13243 -14.00271 -13.91874 -13.83517 -13.70955 -13.37016 -13.16489 -12.89229 -12.86457 -12.69410 -12.44650 -12.16033 -12.05795 -11.93285 -11.40624 -11.38498 -11.18492 -10.86309 -10.75290 -10.60130 -10.36564 -10.17607 -9.92093 -9.87087 -9.67328 -8.91078 -8.66053 -6.95882 -5.75288 -3.04299 2.14449 2.19852 2.61326 3.34567 3.44879 3.49395 3.50115 3.58174 3.68027 3.84719 4.08954 4.29912 4.41768 4.49975 4.60498 4.65255 4.85331 4.91521 4.98864 5.01500 5.05233 5.13052 5.23046 5.26513 5.46788 5.48185 5.56023 5.57922 5.65346 5.71456 5.88861 5.94104 6.09323 6.24035 6.41492 6.60984 6.78485 6.97189 7.12470 7.37589 7.69719 7.71111 8.42860 9.54828 10.11541 10.48128 11.47021 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.002768 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.931386 B =10111.998674 C =10328.356428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.060 0.940 4 N -0.719 5.719 5 C -0.241 4.241 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.076 3.924 14 H 0.065 0.935 15 C 0.083 3.917 16 N -0.602 5.602 17 C 0.529 3.471 18 O -0.518 6.518 19 C -0.131 4.131 20 C -0.164 4.164 21 C -0.166 4.166 22 C 0.476 3.524 23 F -0.171 7.171 24 F -0.180 7.180 25 F -0.172 7.172 26 C 0.047 3.953 27 C 0.044 3.956 28 O -0.355 6.355 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.389 0.611 33 H 0.255 0.745 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.055 0.945 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.961 -3.838 -23.897 24.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.078 0.922 4 N -0.360 5.360 5 C -0.372 4.372 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.016 3.984 14 H 0.083 0.917 15 C -0.039 4.039 16 N -0.335 5.335 17 C 0.315 3.685 18 O -0.393 6.393 19 C -0.136 4.136 20 C -0.221 4.221 21 C -0.222 4.222 22 C 0.422 3.578 23 F -0.152 7.152 24 F -0.162 7.162 25 F -0.153 7.153 26 C -0.076 4.076 27 C -0.035 4.035 28 O -0.273 6.273 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.223 0.777 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.127 0.873 43 H 0.103 0.897 44 H 0.073 0.927 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.895 -3.119 -23.611 23.891 hybrid contribution 0.465 0.306 0.503 0.750 sum -1.430 -2.813 -23.108 23.323 Atomic orbital electron populations 1.22419 0.98606 1.01625 0.99599 1.20193 0.92870 0.94639 0.84886 0.92229 1.42340 1.77901 1.10935 1.04857 1.19203 1.36799 0.93865 0.87347 0.91202 1.24730 1.02103 0.95948 0.98009 1.69661 1.50692 1.08621 1.28944 0.86282 0.77792 0.78609 0.83578 1.21275 1.21728 1.21264 1.23010 0.97715 0.82985 0.94655 0.91710 1.22587 1.02343 0.95770 0.83153 1.47945 1.53955 1.12964 1.18678 1.19653 0.78467 0.87627 0.82778 1.90811 1.55127 1.15557 1.77806 1.22049 0.99228 0.97675 0.94648 1.22302 1.00065 0.96113 1.03582 1.22370 0.94996 1.02737 1.02147 1.19707 0.78665 0.78803 0.80672 1.93213 1.52994 1.87094 1.81875 1.93173 1.91416 1.73090 1.58488 1.93199 1.73117 1.59913 1.89086 1.23172 1.01392 0.82080 1.00937 1.22962 0.99618 0.95389 0.85486 1.88123 1.67410 1.25838 1.45930 0.92836 0.94682 0.92422 0.77678 0.93498 0.89707 0.88004 0.88836 0.89509 0.90218 0.90415 0.89617 0.88522 0.87290 0.89729 0.92671 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.06 37.16 0.34 -2.55 16 2 C 0.18 3.59 2.77 -67.93 -0.19 3.40 16 3 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 4 N -0.72 -17.86 5.10 -53.43 -0.27 -18.13 16 5 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 9 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.08 1.22 2.60 -26.58 -0.07 1.15 16 14 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 15 C 0.08 1.14 5.81 -3.54 -0.02 1.12 16 16 N -0.60 -6.94 3.00 -172.28 -0.52 -7.46 16 17 C 0.53 6.67 6.26 -10.99 -0.07 6.60 16 18 O -0.52 -8.54 14.33 5.56 0.08 -8.46 16 19 C -0.13 -1.21 0.32 -155.66 -0.05 -1.26 16 20 C -0.16 -1.16 7.82 37.16 0.29 -0.87 16 21 C -0.17 -1.03 7.84 37.16 0.29 -0.74 16 22 C 0.48 5.36 1.95 37.16 0.07 5.43 16 23 F -0.17 -2.27 15.66 2.25 0.04 -2.24 16 24 F -0.18 -1.76 16.70 2.25 0.04 -1.72 16 25 F -0.17 -2.20 15.71 2.25 0.04 -2.16 16 26 C 0.05 0.39 4.02 -3.53 -0.01 0.37 16 27 C 0.04 0.46 6.76 37.31 0.25 0.71 16 28 O -0.36 -5.51 9.25 -35.23 -0.33 -5.83 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.03 0.51 6.42 -51.93 -0.33 0.18 16 31 H 0.06 1.07 7.56 -51.93 -0.39 0.68 16 32 H 0.39 10.40 7.59 -40.82 -0.31 10.09 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.08 1.10 6.28 -51.93 -0.33 0.77 16 35 H 0.10 1.50 7.12 -51.93 -0.37 1.13 16 36 H 0.09 0.61 4.30 -51.93 -0.22 0.38 16 37 H 0.09 0.41 7.91 -51.93 -0.41 0.00 16 38 H 0.08 0.66 7.41 -51.93 -0.38 0.27 16 39 H 0.08 0.54 7.55 -51.93 -0.39 0.15 16 40 H 0.08 0.37 7.88 -51.93 -0.41 -0.04 16 41 H 0.10 0.48 4.61 -51.93 -0.24 0.24 16 42 H 0.11 0.60 3.01 -51.93 -0.16 0.45 16 43 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 44 H 0.06 0.58 7.51 -51.93 -0.39 0.19 16 45 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -33.36 356.19 -5.26 -38.62 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.99 Total: 5.86 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 0.59 Total: 6.13 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.06 Total: -52.86 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.25 Total: -14.29 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.11 Total: -6.12 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.36 -5.26 -38.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506851496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.874 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds