Wall clock time and date at job start Tue Mar 31 2020 20:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47537 * 2 1 4 4 N 1.46500 * 109.46934 * 120.00128 * 2 1 3 5 5 C 1.36940 * 120.00081 * 274.99898 * 4 2 1 6 6 H 1.07995 * 119.99524 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99988 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00528 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99811 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47192 * 60.00336 * 9 7 5 11 11 H 1.48504 * 109.47197 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47446 * 300.00086 * 9 7 5 13 13 C 1.53004 * 109.47116 * 239.99520 * 2 1 3 14 14 H 1.08997 * 109.51322 * 185.10383 * 13 2 1 15 15 C 1.53296 * 109.50999 * 65.00565 * 13 2 1 16 16 N 1.47145 * 108.38720 * 187.72258 * 15 13 2 17 17 C 1.34779 * 120.98683 * 230.51606 * 16 15 13 18 18 O 1.21282 * 119.99257 * 354.91073 * 17 16 15 19 19 C 1.50694 * 120.00303 * 174.90678 * 17 16 15 20 20 C 1.52998 * 109.47498 * 300.65816 * 19 17 16 21 21 C 1.53003 * 109.46839 * 60.65887 * 19 17 16 22 22 C 1.53005 * 109.46849 * 180.65513 * 19 17 16 23 23 F 1.39898 * 109.47307 * 60.00441 * 22 19 17 24 24 F 1.39908 * 109.46880 * 180.02562 * 22 19 17 25 25 F 1.39893 * 109.47330 * 300.00223 * 22 19 17 26 26 C 1.47158 * 118.03619 * 50.53364 * 16 15 13 27 27 C 1.53302 * 108.38114 * 309.46653 * 26 16 15 28 28 O 1.42955 * 109.55667 * 305.23495 * 13 2 1 29 29 H 1.09002 * 109.47459 * 300.00166 * 1 2 3 30 30 H 1.09004 * 109.46664 * 59.99706 * 1 2 3 31 31 H 1.09001 * 109.47403 * 179.97438 * 1 2 3 32 32 H 0.97008 * 120.00291 * 94.99077 * 4 2 1 33 33 H 0.96995 * 120.00617 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.68379 * 307.44681 * 15 13 2 35 35 H 1.08999 * 109.68027 * 67.99679 * 15 13 2 36 36 H 1.08996 * 109.47086 * 44.03844 * 20 19 17 37 37 H 1.09000 * 109.47122 * 164.03798 * 20 19 17 38 38 H 1.08997 * 109.47010 * 284.03860 * 20 19 17 39 39 H 1.09002 * 109.46894 * 69.69901 * 21 19 17 40 40 H 1.09001 * 109.47033 * 189.69323 * 21 19 17 41 41 H 1.08990 * 109.47039 * 309.69768 * 21 19 17 42 42 H 1.09000 * 109.68345 * 189.74836 * 26 16 15 43 43 H 1.08997 * 109.71022 * 69.20438 * 26 16 15 44 44 H 1.08997 * 109.51495 * 292.37659 * 27 26 16 45 45 H 1.08999 * 109.54865 * 172.25068 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8918 1.0402 2.4243 7 6 2.6112 -0.6621 3.5093 8 7 2.9232 -1.9394 3.4505 9 14 2.7903 0.2700 5.1182 10 1 1.4683 0.8078 5.5285 11 1 3.2979 -0.6488 6.1687 12 1 3.7463 1.3916 4.9368 13 6 2.0400 -0.7214 -1.2492 14 1 3.1261 -0.8016 -1.2054 15 6 1.6350 0.0696 -2.4984 16 7 1.9709 -0.7330 -3.6850 17 6 2.6777 -0.2038 -4.7033 18 8 2.9674 0.9739 -4.6926 19 6 3.1081 -1.0752 -5.8549 20 6 3.9856 -2.2144 -5.3323 21 6 1.8721 -1.6581 -6.5431 22 6 3.9034 -0.2380 -6.8586 23 9 5.0336 0.2950 -6.2294 24 9 4.3025 -1.0469 -7.9280 25 9 3.1011 0.8036 -7.3364 26 6 1.5119 -2.1305 -3.7275 27 6 1.9229 -2.8142 -2.4184 28 8 1.4668 -2.0294 -1.3140 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2488 -1.6319 1.1527 33 1 3.2465 -2.3967 4.2425 34 1 0.5627 0.2640 -2.4782 35 1 2.1792 1.0136 -2.5275 36 1 3.5393 -2.6323 -4.4300 37 1 4.0631 -2.9915 -6.0928 38 1 4.9796 -1.8310 -5.1020 39 1 1.3371 -0.8633 -7.0630 40 1 2.1804 -2.4183 -7.2608 41 1 1.2183 -2.1076 -5.7958 42 1 1.9747 -2.6435 -4.5705 43 1 0.4272 -2.1582 -3.8312 44 1 3.0086 -2.9021 -2.3788 45 1 1.4753 -3.8069 -2.3692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506851496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:24 Heat of formation + Delta-G solvation = -220.750033 kcal Electronic energy + Delta-G solvation = -31898.131462 eV Core-core repulsion = 27115.218407 eV Total energy + Delta-G solvation = -4782.913055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.21183 -48.67572 -48.66297 -42.02519 -39.86169 -37.43947 -36.70150 -35.55758 -34.27288 -31.86791 -30.06982 -28.72644 -28.56880 -27.37657 -26.45915 -24.98312 -24.56848 -22.75192 -21.21214 -20.81683 -19.53430 -19.43927 -19.28095 -18.55436 -17.87611 -17.44554 -16.98381 -16.67844 -16.62960 -16.18293 -15.93978 -15.71819 -15.53557 -15.23429 -15.08615 -15.06385 -14.88099 -14.81703 -14.74091 -14.55605 -14.51574 -14.01425 -13.71705 -13.65008 -13.51039 -13.20343 -13.09207 -12.91691 -12.78806 -12.51538 -12.44376 -12.36984 -12.22030 -12.14001 -11.80032 -11.63850 -11.56497 -11.22427 -10.92015 -10.82556 -9.69266 -8.99844 -7.91652 -5.20045 1.21236 1.33077 1.48117 1.50744 1.56570 1.74733 2.52358 2.57235 2.75670 2.80751 2.90329 3.35392 3.42131 3.54778 3.57744 3.69047 3.86711 3.90202 3.97799 4.07114 4.26523 4.35592 4.37766 4.42067 4.48293 4.57791 4.61036 4.62082 4.66080 4.77561 4.82513 4.94346 5.04676 5.06563 5.09437 5.15215 5.26899 5.52235 5.63049 6.05849 6.25532 6.30419 6.75768 7.36713 8.12254 8.37055 9.31499 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.002768 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.931386 B =10111.998674 C =10328.356428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.175 3.825 3 H 0.056 0.944 4 N -0.732 5.732 5 C -0.242 4.242 6 H 0.075 0.925 7 C -0.074 4.074 8 N -0.968 5.968 9 Si 0.970 3.030 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.279 1.279 13 C 0.092 3.908 14 H 0.042 0.958 15 C 0.093 3.907 16 N -0.600 5.600 17 C 0.523 3.477 18 O -0.566 6.566 19 C -0.123 4.123 20 C -0.164 4.164 21 C -0.165 4.165 22 C 0.469 3.531 23 F -0.188 7.188 24 F -0.170 7.170 25 F -0.185 7.185 26 C 0.048 3.952 27 C 0.033 3.967 28 O -0.379 6.379 29 H 0.034 0.966 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.376 0.624 33 H 0.250 0.750 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.144 0.856 43 H 0.106 0.894 44 H 0.052 0.948 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 -4.959 -25.652 26.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.066 3.934 3 H 0.073 0.927 4 N -0.372 5.372 5 C -0.373 4.373 6 H 0.093 0.907 7 C -0.266 4.266 8 N -0.618 5.618 9 Si 0.799 3.201 10 H -0.204 1.204 11 H -0.222 1.222 12 H -0.206 1.206 13 C 0.033 3.967 14 H 0.060 0.940 15 C -0.030 4.030 16 N -0.332 5.332 17 C 0.310 3.690 18 O -0.444 6.444 19 C -0.128 4.128 20 C -0.221 4.221 21 C -0.221 4.221 22 C 0.414 3.586 23 F -0.170 7.170 24 F -0.151 7.151 25 F -0.166 7.166 26 C -0.072 4.072 27 C -0.044 4.044 28 O -0.298 6.298 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.208 0.792 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.161 0.839 43 H 0.124 0.876 44 H 0.071 0.929 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.056 -4.238 -25.410 25.942 hybrid contribution 0.820 0.645 0.938 1.403 sum -2.236 -3.593 -24.473 24.836 Atomic orbital electron populations 1.22210 0.96809 1.01296 1.00431 1.20425 0.93964 0.94443 0.84574 0.92652 1.42500 1.78348 1.10475 1.05893 1.19600 1.35140 0.94193 0.88406 0.90696 1.25513 1.02969 0.96864 1.01297 1.69816 1.52493 1.10120 1.29394 0.85261 0.77932 0.77317 0.79545 1.20450 1.22215 1.20570 1.22526 0.96080 0.83963 0.94155 0.94047 1.22295 1.02655 0.94964 0.83072 1.47990 1.53527 1.14080 1.17590 1.20290 0.77628 0.87491 0.83549 1.90788 1.56808 1.17836 1.78980 1.22109 1.00628 0.97103 0.92914 1.22405 0.98820 0.95927 1.04939 1.22490 0.93562 1.03118 1.02947 1.20090 0.78333 0.78837 0.81341 1.93176 1.54048 1.87496 1.82263 1.93188 1.91330 1.72537 1.58045 1.93171 1.73371 1.60756 1.89299 1.23441 1.02942 0.80019 1.00839 1.23322 0.99897 0.96144 0.84995 1.88072 1.67631 1.25562 1.48533 0.94632 0.91131 0.93238 0.79158 0.94106 0.88451 0.89595 0.88013 0.86227 0.91732 0.91162 0.86820 0.86734 0.83924 0.87632 0.92943 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 9.06 71.98 0.65 -4.49 16 2 C 0.17 6.83 2.77 44.99 0.12 6.96 16 3 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 4 N -0.73 -37.12 5.10 -322.95 -1.65 -38.77 16 5 C -0.24 -13.48 9.93 84.03 0.83 -12.65 16 6 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 7 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 8 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 9 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 C 0.09 2.97 2.60 30.69 0.08 3.05 16 14 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 15 C 0.09 2.46 5.81 86.36 0.50 2.96 16 16 N -0.60 -12.74 3.00 -817.35 -2.45 -15.19 16 17 C 0.52 12.58 6.26 87.65 0.55 13.13 16 18 O -0.57 -18.87 14.33 -3.04 -0.04 -18.91 16 19 C -0.12 -1.99 0.32 -52.93 -0.02 -2.01 16 20 C -0.16 -1.85 7.82 71.98 0.56 -1.29 16 21 C -0.16 -1.41 7.84 71.98 0.56 -0.85 16 22 C 0.47 10.02 1.95 71.98 0.14 10.16 16 23 F -0.19 -5.05 15.66 44.97 0.70 -4.35 16 24 F -0.17 -2.96 16.70 44.97 0.75 -2.21 16 25 F -0.18 -4.65 15.71 44.97 0.71 -3.94 16 26 C 0.05 0.63 4.02 86.35 0.35 0.97 16 27 C 0.03 0.61 6.76 72.08 0.49 1.10 16 28 O -0.38 -11.36 9.25 -148.98 -1.38 -12.74 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.93 6.42 -2.38 -0.02 1.91 16 31 H 0.05 1.80 7.56 -2.39 -0.02 1.78 16 32 H 0.38 20.71 7.59 -92.70 -0.70 20.01 16 33 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.10 2.32 6.28 -2.39 -0.01 2.31 16 35 H 0.09 2.57 7.12 -2.39 -0.02 2.55 16 36 H 0.10 0.97 4.30 -2.39 -0.01 0.96 16 37 H 0.12 0.59 7.91 -2.39 -0.02 0.57 16 38 H 0.06 0.96 7.41 -2.39 -0.02 0.95 16 39 H 0.07 0.77 7.55 -2.39 -0.02 0.75 16 40 H 0.11 0.40 7.88 -2.39 -0.02 0.38 16 41 H 0.11 0.56 4.61 -2.39 -0.01 0.55 16 42 H 0.14 0.90 3.01 -2.39 -0.01 0.89 16 43 H 0.11 1.06 8.08 -2.39 -0.02 1.04 16 44 H 0.05 1.00 7.51 -2.39 -0.02 0.98 16 45 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -75.57 356.19 4.59 -70.98 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.34 Total: 22.56 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 5.29 Total: 13.26 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -3.81 Total: -113.12 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -1.42 Total: -31.65 kcal Atomic # 9 Polarization: -12.66 SS G_CDS: 2.16 Total: -10.50 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -75.57 4.59 -70.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506851496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.765 kcal (2) G-P(sol) polarization free energy of solvation -75.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds