Wall clock time and date at job start Tue Mar 31 2020 21:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47682 * 2 1 4 4 C 1.53002 * 109.47091 * 120.00320 * 2 1 3 5 5 N 1.46493 * 109.47481 * 174.99853 * 4 2 1 6 6 C 1.46500 * 120.00086 * 270.00018 * 5 4 2 7 7 C 1.34777 * 120.00372 * 89.99537 * 5 4 2 8 8 O 1.21548 * 119.99719 * 4.35656 * 7 5 4 9 9 C 1.47844 * 120.00397 * 184.36227 * 7 5 4 10 10 C 1.39579 * 120.14038 * 328.75986 * 9 7 5 11 11 C 1.37963 * 119.85174 * 179.78971 * 10 9 7 12 12 C 1.38365 * 120.13992 * 0.48482 * 11 10 9 13 13 P 1.81407 * 119.84821 * 179.72161 * 12 11 10 14 14 C 1.82300 * 109.47205 * 330.02073 * 13 12 11 15 15 C 1.82300 * 109.47209 * 90.02601 * 13 12 11 16 16 O 1.48007 * 109.46696 * 210.02690 * 13 12 11 17 17 C 1.38358 * 120.29702 * 359.74752 * 12 11 10 18 18 C 1.37959 * 120.14260 * 0.02562 * 17 12 11 19 19 N 1.46507 * 109.46983 * 239.99754 * 2 1 3 20 20 C 1.36938 * 119.99971 * 85.00145 * 19 2 1 21 21 H 1.07999 * 119.99582 * 0.02562 * 20 19 2 22 22 C 1.38811 * 119.99976 * 180.02562 * 20 19 2 23 23 N 1.31615 * 119.99970 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99937 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47111 * 59.99659 * 24 22 20 26 26 H 1.48496 * 109.47153 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47161 * 300.00086 * 24 22 20 28 28 H 1.08999 * 109.46756 * 59.99872 * 1 2 3 29 29 H 1.08992 * 109.47682 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46717 * 300.00468 * 1 2 3 31 31 H 1.09001 * 109.47096 * 54.99473 * 4 2 1 32 32 H 1.09005 * 109.46810 * 294.99760 * 4 2 1 33 33 H 1.09005 * 109.47326 * 273.28222 * 6 5 4 34 34 H 1.09005 * 109.47266 * 33.28204 * 6 5 4 35 35 H 1.08996 * 109.47884 * 153.28138 * 6 5 4 36 36 H 1.07996 * 120.07418 * 0.02695 * 10 9 7 37 37 H 1.08000 * 119.93039 * 180.23533 * 11 10 9 38 38 H 1.09001 * 109.46410 * 60.00396 * 14 13 12 39 39 H 1.08994 * 109.47145 * 179.97438 * 14 13 12 40 40 H 1.08996 * 109.47539 * 300.00412 * 14 13 12 41 41 H 1.08998 * 109.47055 * 59.99666 * 15 13 12 42 42 H 1.08994 * 109.46677 * 179.97438 * 15 13 12 43 43 H 1.09000 * 109.46873 * 299.99890 * 15 13 12 44 44 H 1.07997 * 119.92961 * 179.97438 * 17 12 11 45 45 H 1.07999 * 120.06919 * 179.97438 * 18 17 12 46 46 H 0.97001 * 119.99881 * 265.00572 * 19 2 1 47 47 H 0.96997 * 120.00089 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4999 -0.8265 1.1906 6 6 4.1257 -1.9921 0.5612 7 6 4.2676 0.1490 1.7156 8 8 3.7510 1.0766 2.3073 9 6 5.7378 0.0909 1.5718 10 6 6.3886 -1.1427 1.5179 11 6 7.7604 -1.1900 1.3792 12 6 8.4919 -0.0180 1.3036 13 15 10.2961 -0.0894 1.1289 14 6 10.9256 -1.5976 1.9366 15 6 10.7346 -0.1192 -0.6403 16 8 10.9010 1.1011 1.7672 17 6 7.8535 1.2081 1.3613 18 6 6.4818 1.2694 1.4952 19 7 2.0183 -0.6907 -1.1962 20 6 2.1491 -0.0076 -2.3758 21 1 1.8926 1.0404 -2.4242 22 6 2.6113 -0.6621 -3.5093 23 7 2.9233 -1.9394 -3.4504 24 14 2.7903 0.2698 -5.1182 25 1 3.7464 1.3916 -4.9367 26 1 3.2991 -0.6486 -6.1683 27 1 1.4684 0.8078 -5.5285 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6053 -1.7199 1.2951 32 1 1.7516 -0.1584 2.1370 33 1 4.2289 -2.7904 1.2963 34 1 3.5035 -2.3369 -0.2647 35 1 5.1103 -1.7164 0.1837 36 1 5.8191 -2.0582 1.5807 37 1 8.2648 -2.1439 1.3335 38 1 10.4801 -2.4743 1.4666 39 1 12.0096 -1.6407 1.8313 40 1 10.6635 -1.5797 2.9945 41 1 10.3582 0.7825 -1.1232 42 1 11.8187 -0.1617 -0.7452 43 1 10.2891 -0.9960 -1.1103 44 1 8.4303 2.1193 1.3022 45 1 5.9847 2.2271 1.5405 46 1 2.2489 -1.6319 -1.1526 47 1 3.2466 -2.3967 -4.2424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507160654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:59 Heat of formation + Delta-G solvation = -32.982207 kcal Electronic energy + Delta-G solvation = -27301.166707 eV Core-core repulsion = 23564.247464 eV Total energy + Delta-G solvation = -3736.919242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -40.37385 -38.29143 -36.41822 -34.50520 -33.19234 -32.32046 -31.31387 -31.03789 -29.16286 -28.86927 -27.96740 -27.03957 -26.04616 -23.88447 -22.89139 -22.80765 -20.45732 -19.42760 -17.46221 -17.37136 -17.03240 -16.23576 -15.49626 -15.15802 -14.96056 -14.70767 -14.61826 -14.09538 -14.07307 -13.80670 -13.75832 -13.61053 -13.52015 -13.30022 -13.09934 -12.86372 -12.68959 -12.41024 -12.31923 -12.15250 -12.14312 -11.93377 -11.66141 -11.48533 -11.35221 -10.99841 -10.89659 -10.77847 -10.46728 -10.16896 -9.97885 -9.88934 -9.75589 -9.62105 -9.27337 -9.07786 -8.99529 -8.29622 -7.03539 -5.86383 -3.13105 0.53412 1.18519 1.32824 2.78496 3.18316 3.37588 3.41894 3.43525 3.67512 4.27829 4.43204 4.46432 4.52247 4.55773 4.66232 4.69630 4.70599 5.05445 5.10656 5.16897 5.28421 5.38322 5.41604 5.45455 5.50480 5.57691 5.59091 5.66252 5.71419 5.77415 5.79043 5.90104 6.01273 6.06170 6.18328 6.19849 6.21321 6.27851 6.61912 6.66359 6.73067 6.79444 7.06762 7.31601 7.57996 7.64645 8.32288 8.34293 9.44718 9.99834 10.35766 11.36644 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011184 B = 0.003421 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.880702 B = 8181.618560 C = 9652.640157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.154 3.846 3 H 0.051 0.949 4 C 0.109 3.891 5 N -0.584 5.584 6 C 0.060 3.940 7 C 0.553 3.447 8 O -0.541 6.541 9 C -0.083 4.083 10 C -0.118 4.118 11 C -0.086 4.086 12 C -0.716 4.716 13 P 2.559 2.441 14 C -0.811 4.811 15 C -0.809 4.809 16 O -1.004 7.004 17 C -0.047 4.047 18 C -0.079 4.079 19 N -0.720 5.720 20 C -0.232 4.232 21 H 0.068 0.932 22 C -0.013 4.013 23 N -0.937 5.937 24 Si 0.904 3.096 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.149 0.851 37 H 0.127 0.873 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.148 0.852 45 H 0.139 0.861 46 H 0.381 0.619 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.934 -2.366 11.154 17.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.043 3.957 3 H 0.069 0.931 4 C -0.014 4.014 5 N -0.314 5.314 6 C -0.083 4.083 7 C 0.341 3.659 8 O -0.420 6.420 9 C -0.086 4.086 10 C -0.136 4.136 11 C -0.104 4.104 12 C -0.705 4.705 13 P 2.628 2.372 14 C -0.856 4.856 15 C -0.854 4.854 16 O -1.107 7.107 17 C -0.065 4.065 18 C -0.098 4.098 19 N -0.364 5.364 20 C -0.363 4.363 21 H 0.086 0.914 22 C -0.208 4.208 23 N -0.586 5.586 24 Si 0.735 3.265 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.167 0.833 37 H 0.145 0.855 38 H 0.109 0.891 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.110 0.890 44 H 0.166 0.834 45 H 0.157 0.843 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.264 -2.539 10.910 16.610 hybrid contribution -0.454 -0.972 -1.695 2.006 sum 11.810 -3.511 9.215 15.386 Atomic orbital electron populations 1.22362 0.98582 1.00912 1.00403 1.20672 0.92142 0.96250 0.86605 0.93067 1.21914 0.78252 1.01494 0.99757 1.47473 1.06898 1.20925 1.56101 1.22563 1.00924 0.86768 0.98045 1.18275 0.86298 0.82192 0.79145 1.90748 1.74555 1.33843 1.42830 1.20223 0.93730 0.94569 1.00048 1.22084 0.95185 0.98174 0.98121 1.20906 0.94557 0.96821 0.98100 1.33142 1.27900 0.97634 1.11828 0.89724 0.46623 0.52028 0.48795 1.31853 1.12451 1.26242 1.15014 1.31838 1.10667 1.09267 1.33673 1.95053 1.79997 1.56058 1.79582 1.20954 0.94256 0.97132 0.94160 1.21440 0.94008 0.98148 0.96211 1.42478 1.78230 1.10377 1.05289 1.19199 1.36019 0.93830 0.87275 0.91402 1.24649 1.02324 0.95964 0.97866 1.69610 1.51487 1.08565 1.28969 0.86308 0.77875 0.78636 0.83652 1.21393 1.21730 1.21254 0.92473 0.93422 0.94194 0.90698 0.89794 0.93094 0.88664 0.89713 0.83347 0.85497 0.89090 0.87351 0.87015 0.86961 0.87488 0.88980 0.83399 0.84291 0.78383 0.93576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.49 37.16 0.35 -2.54 16 2 C 0.15 3.08 3.20 -67.93 -0.22 2.86 16 3 H 0.05 1.14 8.08 -51.93 -0.42 0.72 16 4 C 0.11 1.83 5.09 -4.04 -0.02 1.81 16 5 N -0.58 -9.89 2.73 -182.69 -0.50 -10.39 16 6 C 0.06 0.90 8.45 59.85 0.51 1.40 16 7 C 0.55 9.94 7.45 -12.33 -0.09 9.84 16 8 O -0.54 -11.06 16.29 5.32 0.09 -10.98 16 9 C -0.08 -1.28 5.49 -104.97 -0.58 -1.86 16 10 C -0.12 -1.49 7.46 -39.18 -0.29 -1.78 16 11 C -0.09 -0.87 9.56 -39.64 -0.38 -1.25 16 12 C -0.72 -7.22 6.19 -39.49 -0.24 -7.47 16 13 P 2.56 18.86 5.23 -42.89 -0.22 18.64 16 14 C -0.81 -4.97 10.54 101.05 1.06 -3.91 16 15 C -0.81 -6.01 11.06 101.05 1.12 -4.89 16 16 O -1.00 -11.27 18.40 21.61 0.40 -10.87 16 17 C -0.05 -0.56 9.67 -39.64 -0.38 -0.95 16 18 C -0.08 -1.15 9.60 -39.19 -0.38 -1.52 16 19 N -0.72 -17.07 4.56 -53.42 -0.24 -17.31 16 20 C -0.23 -6.26 9.93 -15.06 -0.15 -6.41 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 23 N -0.94 -26.62 13.06 55.49 0.72 -25.90 16 24 Si 0.90 22.06 29.55 -169.99 -5.02 17.03 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 32 H 0.08 1.38 7.37 -51.93 -0.38 0.99 16 33 H 0.05 0.59 7.38 -51.93 -0.38 0.21 16 34 H 0.09 1.70 5.56 -51.93 -0.29 1.41 16 35 H 0.08 1.27 4.78 -51.93 -0.25 1.02 16 36 H 0.15 1.62 4.70 -52.49 -0.25 1.37 16 37 H 0.13 0.79 7.26 -52.49 -0.38 0.41 16 38 H 0.09 0.41 7.64 -51.93 -0.40 0.02 16 39 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.15 1.41 8.03 -52.49 -0.42 0.99 16 45 H 0.14 1.98 7.94 -52.49 -0.42 1.56 16 46 H 0.38 9.18 5.30 -40.82 -0.22 8.97 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 LS Contribution 393.20 15.07 5.93 5.93 Total: -1.00 -35.86 393.20 -5.79 -41.65 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.15 Total: 9.30 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 0.22 Total: -17.10 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.02 Total: -53.60 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: 0.48 Total: -21.85 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 15 Polarization: 18.86 SS G_CDS: -0.22 Total: 18.64 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.86 -5.79 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507160654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.669 kcal (2) G-P(sol) polarization free energy of solvation -35.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds