Wall clock time and date at job start Tue Mar 31 2020 21:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47682 * 2 1 4 4 C 1.53002 * 109.47091 * 120.00320 * 2 1 3 5 5 N 1.46493 * 109.47481 * 174.99853 * 4 2 1 6 6 C 1.46500 * 120.00086 * 270.00018 * 5 4 2 7 7 C 1.34777 * 120.00372 * 89.99537 * 5 4 2 8 8 O 1.21548 * 119.99719 * 4.35656 * 7 5 4 9 9 C 1.47844 * 120.00397 * 184.36227 * 7 5 4 10 10 C 1.39579 * 120.14038 * 328.75986 * 9 7 5 11 11 C 1.37963 * 119.85174 * 179.78971 * 10 9 7 12 12 C 1.38365 * 120.13992 * 0.48482 * 11 10 9 13 13 P 1.81407 * 119.84821 * 179.72161 * 12 11 10 14 14 C 1.82300 * 109.47205 * 330.02073 * 13 12 11 15 15 C 1.82300 * 109.47209 * 90.02601 * 13 12 11 16 16 O 1.48007 * 109.46696 * 210.02690 * 13 12 11 17 17 C 1.38358 * 120.29702 * 359.74752 * 12 11 10 18 18 C 1.37959 * 120.14260 * 0.02562 * 17 12 11 19 19 N 1.46507 * 109.46983 * 239.99754 * 2 1 3 20 20 C 1.36938 * 119.99971 * 85.00145 * 19 2 1 21 21 H 1.07999 * 119.99582 * 0.02562 * 20 19 2 22 22 C 1.38811 * 119.99976 * 180.02562 * 20 19 2 23 23 N 1.31615 * 119.99970 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99937 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47111 * 59.99659 * 24 22 20 26 26 H 1.48496 * 109.47153 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47161 * 300.00086 * 24 22 20 28 28 H 1.08999 * 109.46756 * 59.99872 * 1 2 3 29 29 H 1.08992 * 109.47682 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46717 * 300.00468 * 1 2 3 31 31 H 1.09001 * 109.47096 * 54.99473 * 4 2 1 32 32 H 1.09005 * 109.46810 * 294.99760 * 4 2 1 33 33 H 1.09005 * 109.47326 * 273.28222 * 6 5 4 34 34 H 1.09005 * 109.47266 * 33.28204 * 6 5 4 35 35 H 1.08996 * 109.47884 * 153.28138 * 6 5 4 36 36 H 1.07996 * 120.07418 * 0.02695 * 10 9 7 37 37 H 1.08000 * 119.93039 * 180.23533 * 11 10 9 38 38 H 1.09001 * 109.46410 * 60.00396 * 14 13 12 39 39 H 1.08994 * 109.47145 * 179.97438 * 14 13 12 40 40 H 1.08996 * 109.47539 * 300.00412 * 14 13 12 41 41 H 1.08998 * 109.47055 * 59.99666 * 15 13 12 42 42 H 1.08994 * 109.46677 * 179.97438 * 15 13 12 43 43 H 1.09000 * 109.46873 * 299.99890 * 15 13 12 44 44 H 1.07997 * 119.92961 * 179.97438 * 17 12 11 45 45 H 1.07999 * 120.06919 * 179.97438 * 18 17 12 46 46 H 0.97001 * 119.99881 * 265.00572 * 19 2 1 47 47 H 0.96997 * 120.00089 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4999 -0.8265 1.1906 6 6 4.1257 -1.9921 0.5612 7 6 4.2676 0.1490 1.7156 8 8 3.7510 1.0766 2.3073 9 6 5.7378 0.0909 1.5718 10 6 6.3886 -1.1427 1.5179 11 6 7.7604 -1.1900 1.3792 12 6 8.4919 -0.0180 1.3036 13 15 10.2961 -0.0894 1.1289 14 6 10.9256 -1.5976 1.9366 15 6 10.7346 -0.1192 -0.6403 16 8 10.9010 1.1011 1.7672 17 6 7.8535 1.2081 1.3613 18 6 6.4818 1.2694 1.4952 19 7 2.0183 -0.6907 -1.1962 20 6 2.1491 -0.0076 -2.3758 21 1 1.8926 1.0404 -2.4242 22 6 2.6113 -0.6621 -3.5093 23 7 2.9233 -1.9394 -3.4504 24 14 2.7903 0.2698 -5.1182 25 1 3.7464 1.3916 -4.9367 26 1 3.2991 -0.6486 -6.1683 27 1 1.4684 0.8078 -5.5285 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6053 -1.7199 1.2951 32 1 1.7516 -0.1584 2.1370 33 1 4.2289 -2.7904 1.2963 34 1 3.5035 -2.3369 -0.2647 35 1 5.1103 -1.7164 0.1837 36 1 5.8191 -2.0582 1.5807 37 1 8.2648 -2.1439 1.3335 38 1 10.4801 -2.4743 1.4666 39 1 12.0096 -1.6407 1.8313 40 1 10.6635 -1.5797 2.9945 41 1 10.3582 0.7825 -1.1232 42 1 11.8187 -0.1617 -0.7452 43 1 10.2891 -0.9960 -1.1103 44 1 8.4303 2.1193 1.3022 45 1 5.9847 2.2271 1.5405 46 1 2.2489 -1.6319 -1.1526 47 1 3.2466 -2.3967 -4.2424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507160654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:58 Heat of formation + Delta-G solvation = -56.803536 kcal Electronic energy + Delta-G solvation = -27302.199677 eV Core-core repulsion = 23564.247464 eV Total energy + Delta-G solvation = -3737.952213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.60072 -39.40513 -37.97844 -36.05482 -34.19221 -33.88879 -32.25921 -32.18942 -30.67235 -29.69501 -28.48417 -28.31995 -27.37368 -25.78576 -24.07808 -23.77046 -21.94965 -20.76058 -19.36220 -18.48206 -18.12165 -17.49159 -16.93904 -16.49197 -16.03735 -15.94578 -15.77425 -15.46892 -15.31874 -14.85692 -14.73191 -14.50451 -14.31789 -14.07751 -14.04802 -13.86820 -13.84519 -13.72489 -13.64816 -13.23702 -13.07746 -13.00012 -12.83392 -12.80098 -12.73987 -12.56346 -12.55324 -12.27569 -12.03601 -11.92953 -11.66487 -11.14270 -10.98033 -10.66118 -10.61015 -10.29887 -10.03083 -9.68423 -8.99787 -7.97323 -5.22605 -0.47034 0.24248 0.74916 1.42703 1.43006 1.49151 1.53493 1.95502 2.51898 2.58858 3.33773 3.37290 3.62722 3.79091 3.79764 3.83490 3.96558 4.03566 4.11826 4.15292 4.23235 4.24975 4.27363 4.35879 4.48617 4.54522 4.59393 4.60587 4.64698 4.70056 4.78468 4.87325 4.91040 4.98460 5.06856 5.11222 5.15530 5.16446 5.21631 5.23887 5.32187 5.47834 5.58340 5.77257 6.23669 6.29567 6.71361 6.98129 7.33811 8.05283 8.34882 9.24953 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011184 B = 0.003421 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.880702 B = 8181.618560 C = 9652.640157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.152 3.848 3 H 0.019 0.981 4 C 0.114 3.886 5 N -0.586 5.586 6 C 0.061 3.939 7 C 0.545 3.455 8 O -0.580 6.580 9 C -0.115 4.115 10 C -0.123 4.123 11 C -0.082 4.082 12 C -0.708 4.708 13 P 2.622 2.378 14 C -0.830 4.830 15 C -0.829 4.829 16 O -1.049 7.049 17 C -0.057 4.057 18 C -0.105 4.105 19 N -0.724 5.724 20 C -0.238 4.238 21 H 0.058 0.942 22 C -0.060 4.060 23 N -0.957 5.957 24 Si 0.958 3.042 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.283 1.283 28 H 0.036 0.964 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.118 0.882 43 H 0.104 0.896 44 H 0.165 0.835 45 H 0.125 0.875 46 H 0.379 0.621 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.415 -4.278 11.409 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.037 0.963 4 C -0.009 4.009 5 N -0.315 5.315 6 C -0.081 4.081 7 C 0.335 3.665 8 O -0.462 6.462 9 C -0.118 4.118 10 C -0.141 4.141 11 C -0.100 4.100 12 C -0.698 4.698 13 P 2.689 2.311 14 C -0.875 4.875 15 C -0.874 4.874 16 O -1.149 7.149 17 C -0.074 4.074 18 C -0.123 4.123 19 N -0.367 5.367 20 C -0.371 4.371 21 H 0.076 0.924 22 C -0.253 4.253 23 N -0.608 5.608 24 Si 0.788 3.212 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.209 1.209 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.184 0.816 37 H 0.193 0.807 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.136 0.864 43 H 0.123 0.877 44 H 0.183 0.817 45 H 0.142 0.858 46 H 0.215 0.785 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.749 -4.436 11.190 18.273 hybrid contribution -0.882 -0.375 -1.750 1.995 sum 12.866 -4.811 9.440 16.668 Atomic orbital electron populations 1.22205 0.96554 1.01664 1.00793 1.20786 0.93523 0.94637 0.86826 0.96278 1.21849 0.78643 1.02433 0.97985 1.47596 1.06898 1.21333 1.55705 1.22672 1.00081 0.87032 0.98319 1.18781 0.87610 0.81636 0.78514 1.90703 1.75548 1.35231 1.44685 1.20219 0.92365 0.96277 1.02911 1.22346 0.96514 0.97515 0.97753 1.21513 0.93746 0.98875 0.95824 1.33644 1.29350 0.97038 1.09752 0.87933 0.44386 0.51107 0.47694 1.31956 1.13458 1.26687 1.15362 1.31989 1.11768 1.09617 1.34015 1.95031 1.80705 1.58412 1.80709 1.21230 0.93326 0.98958 0.93913 1.21505 0.95324 0.97594 0.97921 1.42525 1.78500 1.10272 1.05449 1.19391 1.35322 0.93651 0.88688 0.92392 1.25239 1.02893 0.96820 1.00320 1.69718 1.52393 1.09389 1.29283 0.85459 0.77694 0.77508 0.80568 1.21404 1.21627 1.20946 0.94493 0.92406 0.91382 0.88218 0.89318 0.88837 0.91345 0.89604 0.81626 0.80701 0.86841 0.86454 0.86799 0.87691 0.86358 0.87725 0.81732 0.85752 0.78544 0.93959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.34 9.49 71.98 0.68 -4.66 16 2 C 0.15 6.14 3.20 44.99 0.14 6.28 16 3 H 0.02 0.89 8.08 -2.39 -0.02 0.87 16 4 C 0.11 3.79 5.09 86.38 0.44 4.23 16 5 N -0.59 -19.77 2.73 -850.20 -2.32 -22.09 16 6 C 0.06 1.75 8.45 127.77 1.08 2.83 16 7 C 0.54 20.10 7.45 86.79 0.65 20.75 16 8 O -0.58 -24.85 16.29 -3.87 -0.06 -24.91 16 9 C -0.11 -3.60 5.49 -20.09 -0.11 -3.71 16 10 C -0.12 -2.90 7.46 22.53 0.17 -2.73 16 11 C -0.08 -1.42 9.56 22.23 0.21 -1.20 16 12 C -0.71 -12.83 6.19 22.33 0.14 -12.69 16 13 P 2.62 32.22 5.23 -40.88 -0.21 32.01 16 14 C -0.83 -7.18 10.54 113.37 1.19 -5.98 16 15 C -0.83 -10.31 11.06 113.37 1.25 -9.06 16 16 O -1.05 -22.05 18.40 -41.20 -0.76 -22.81 16 17 C -0.06 -1.33 9.67 22.23 0.22 -1.12 16 18 C -0.10 -3.15 9.60 22.53 0.22 -2.93 16 19 N -0.72 -34.73 4.56 -322.94 -1.47 -36.20 16 20 C -0.24 -13.07 9.93 84.03 0.83 -12.24 16 21 H 0.06 3.22 7.83 -2.91 -0.02 3.20 16 22 C -0.06 -3.29 5.50 84.86 0.47 -2.83 16 23 N -0.96 -54.43 13.06 21.65 0.28 -54.14 16 24 Si 0.96 45.51 29.55 68.60 2.03 47.54 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.10 2.81 8.07 -2.39 -0.02 2.80 16 32 H 0.09 2.88 7.37 -2.38 -0.02 2.86 16 33 H 0.09 1.88 7.38 -2.38 -0.02 1.86 16 34 H 0.07 2.39 5.56 -2.38 -0.01 2.38 16 35 H 0.09 2.46 4.78 -2.39 -0.01 2.45 16 36 H 0.17 3.15 4.70 -2.91 -0.01 3.14 16 37 H 0.18 1.25 7.26 -2.91 -0.02 1.22 16 38 H 0.11 0.48 7.64 -2.39 -0.02 0.46 16 39 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.17 3.12 8.03 -2.91 -0.02 3.10 16 45 H 0.12 3.91 7.94 -2.91 -0.02 3.89 16 46 H 0.38 18.40 5.30 -92.71 -0.49 17.91 16 47 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -79.31 393.20 5.55 -73.76 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: 0.48 Total: 31.90 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 7.58 Total: -25.05 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -3.51 Total: -112.43 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -0.82 Total: -47.72 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Atomic # 15 Polarization: 32.22 SS G_CDS: -0.21 Total: 32.01 kcal Total: -79.31 5.55 -73.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507160654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.958 kcal (2) G-P(sol) polarization free energy of solvation -79.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds