Wall clock time and date at job start Tue Mar 31 2020 21:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 N 1.46502 * 109.46925 * 175.00128 * 4 2 1 6 6 C 1.34775 * 119.99947 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99839 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00028 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.47007 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46756 * 180.02562 * 9 8 6 11 11 H 1.08992 * 110.33293 * 307.25158 * 10 9 8 12 12 C 1.54475 * 110.36922 * 184.99989 * 10 9 8 13 13 C 1.54501 * 104.06409 * 217.18864 * 12 10 9 14 14 C 1.54479 * 104.06419 * 0.02562 * 13 12 10 15 15 H 1.08999 * 110.37433 * 265.03925 * 14 13 12 16 16 C 1.52999 * 110.37486 * 142.80782 * 14 13 12 17 17 F 1.39898 * 109.47095 * 60.00177 * 16 14 13 18 18 F 1.39898 * 109.47395 * 180.02562 * 16 14 13 19 19 F 1.39908 * 109.47054 * 299.99976 * 16 14 13 20 20 O 1.44423 * 110.36953 * 69.62193 * 10 9 8 21 21 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 22 22 C 1.36943 * 119.99752 * 84.72207 * 21 2 1 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 2 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 2 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47294 * 90.00155 * 26 24 22 28 28 H 1.48499 * 109.47218 * 210.00015 * 26 24 22 29 29 H 1.48496 * 109.47166 * 329.99846 * 26 24 22 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 32 32 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 33 33 H 1.08997 * 109.47038 * 294.99798 * 4 2 1 34 34 H 1.08999 * 109.47047 * 55.00424 * 4 2 1 35 35 H 0.96997 * 120.00059 * 359.97438 * 5 4 2 36 36 H 1.08992 * 109.47087 * 299.99808 * 8 6 5 37 37 H 1.08999 * 109.46766 * 59.99867 * 8 6 5 38 38 H 1.08997 * 109.47038 * 299.99926 * 9 8 6 39 39 H 1.08991 * 109.46868 * 60.00272 * 9 8 6 40 40 H 1.09005 * 110.51255 * 335.83938 * 12 10 9 41 41 H 1.09003 * 110.51096 * 98.40645 * 12 10 9 42 42 H 1.09003 * 110.51460 * 118.64525 * 13 12 10 43 43 H 1.08997 * 110.51819 * 241.35489 * 13 12 10 44 44 H 0.97001 * 120.00384 * 265.00562 * 21 2 1 45 45 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5699 -1.8842 3.1394 8 6 5.6749 -1.5378 2.1300 9 6 6.1849 -2.2590 3.3793 10 6 7.7098 -2.3686 3.3180 11 1 8.0197 -2.8159 2.3736 12 6 8.2371 -3.2026 4.5066 13 6 9.5574 -2.5030 4.8996 14 6 9.6714 -1.3287 3.9024 15 1 10.2852 -1.6145 3.0482 16 6 10.2620 -0.0983 4.5937 17 9 11.5359 -0.4053 5.0838 18 9 10.3562 0.9526 3.6750 19 9 9.4336 0.2833 5.6546 20 8 8.3144 -1.0675 3.4831 21 7 2.0184 -0.6906 -1.1962 22 6 2.1437 -0.0088 -2.3771 23 1 1.8868 1.0391 -2.4256 24 6 2.6010 -0.6645 -3.5120 25 7 2.9136 -1.9417 -3.4530 26 14 2.7727 0.2657 -5.1227 27 1 4.1349 0.8499 -5.2142 28 1 2.5567 -0.6666 -6.2582 29 1 1.7630 1.3533 -5.1763 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7517 -0.1583 2.1370 34 1 1.6054 -1.7198 1.2951 35 1 3.9824 -0.4628 0.4316 36 1 5.9629 -2.1006 1.2422 37 1 6.1098 -0.5394 2.0843 38 1 5.8969 -1.6958 4.2670 39 1 5.7500 -3.2573 3.4255 40 1 7.5295 -3.1763 5.3354 41 1 8.4245 -4.2311 4.1982 42 1 9.5027 -2.1308 5.9227 43 1 10.3999 -3.1850 4.7850 44 1 2.2490 -1.6318 -1.1527 45 1 3.2335 -2.3998 -4.2459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567023994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:40 Heat of formation + Delta-G solvation = -242.708945 kcal Electronic energy + Delta-G solvation = -29551.028242 eV Core-core repulsion = 24767.162977 eV Total energy + Delta-G solvation = -4783.865265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.42100 -47.96655 -47.86973 -40.19294 -39.25182 -36.36019 -33.91186 -33.49964 -32.73827 -31.85845 -30.16279 -28.73424 -26.86041 -25.31412 -23.76703 -23.23668 -22.08555 -21.41573 -20.19311 -19.72282 -18.93318 -18.68464 -18.15923 -17.44193 -16.98338 -16.43392 -16.17560 -15.65110 -15.33012 -14.84899 -14.72618 -14.66510 -14.56294 -14.35217 -14.26107 -14.03708 -14.01194 -14.00211 -13.64367 -13.14090 -13.04286 -12.87562 -12.33884 -12.24887 -12.11643 -12.00793 -11.87424 -11.76039 -11.44183 -11.29684 -11.16459 -10.98476 -10.89096 -10.77101 -10.36258 -10.35139 -10.03413 -9.73880 -9.50541 -9.00536 -8.58911 -7.06424 -5.84068 -3.14111 2.15753 2.98184 3.00884 3.36561 3.38462 3.44762 3.45831 3.54687 3.62175 4.04773 4.11068 4.29714 4.37195 4.52673 4.62231 4.67792 4.85195 4.95971 5.13582 5.23574 5.33604 5.36514 5.38250 5.46388 5.48960 5.57626 5.65257 5.71008 5.86309 5.94639 6.09580 6.11389 6.18479 6.27008 6.33251 6.55865 6.75143 6.86505 7.04859 7.63898 7.98146 8.33665 8.61500 9.45580 10.00478 10.36300 11.37934 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.002256 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.054029 B =12410.809297 C =13387.687480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.115 3.885 5 N -0.713 5.713 6 C 0.510 3.490 7 O -0.560 6.560 8 C -0.142 4.142 9 C -0.094 4.094 10 C 0.074 3.926 11 H 0.082 0.918 12 C -0.147 4.147 13 C -0.150 4.150 14 C 0.030 3.970 15 H 0.114 0.886 16 C 0.462 3.538 17 F -0.178 7.178 18 F -0.175 7.175 19 F -0.174 7.174 20 O -0.345 6.345 21 N -0.723 5.723 22 C -0.242 4.242 23 H 0.071 0.929 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.411 0.589 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.410 -1.487 17.642 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.071 0.929 4 C -0.010 4.010 5 N -0.364 5.364 6 C 0.297 3.703 7 O -0.439 6.439 8 C -0.182 4.182 9 C -0.132 4.132 10 C 0.017 3.983 11 H 0.100 0.900 12 C -0.185 4.185 13 C -0.187 4.187 14 C -0.030 4.030 15 H 0.132 0.868 16 C 0.407 3.593 17 F -0.159 7.159 18 F -0.157 7.157 19 F -0.155 7.155 20 O -0.265 6.265 21 N -0.366 5.366 22 C -0.373 4.373 23 H 0.089 0.911 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.247 0.753 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.877 -1.440 18.136 23.502 hybrid contribution 0.547 0.402 -1.338 1.501 sum 15.424 -1.038 16.798 22.829 Atomic orbital electron populations 1.22362 0.98358 1.01247 1.00355 1.20514 0.92648 0.95760 0.86210 0.92893 1.21665 0.79780 1.00988 0.98523 1.46019 1.08219 1.58705 1.23468 1.20584 0.89905 0.77581 0.82276 1.90651 1.70641 1.48796 1.33857 1.21647 0.92679 1.03706 1.00164 1.21402 0.90584 1.02539 0.98693 1.23283 0.94683 0.82122 0.98184 0.89994 1.22991 0.96208 1.00061 0.99254 1.22985 0.99799 0.96201 0.99749 1.24097 0.88795 0.91414 0.98675 0.86827 1.20238 0.76106 0.85284 0.77637 1.93197 1.41167 1.93068 1.88516 1.93226 1.95980 1.60324 1.66131 1.93210 1.71784 1.92301 1.58235 1.89248 1.20745 1.28221 1.88256 1.42474 1.78082 1.10873 1.05173 1.19228 1.36966 0.93874 0.87208 0.91128 1.24741 1.02075 0.95909 0.98007 1.69666 1.50742 1.08570 1.28904 0.86207 0.77781 0.78586 0.83685 1.21691 1.21833 1.20801 0.93230 0.94208 0.92340 0.91965 0.91947 0.75295 0.88650 0.88458 0.90049 0.89260 0.89481 0.89456 0.89439 0.88818 0.78108 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.49 37.16 0.35 -2.48 16 2 C 0.16 2.98 3.05 -67.93 -0.21 2.77 16 3 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 4 C 0.12 1.97 5.23 -4.04 -0.02 1.95 16 5 N -0.71 -11.78 5.39 -60.29 -0.32 -12.11 16 6 C 0.51 8.15 7.83 -10.99 -0.09 8.06 16 7 O -0.56 -10.51 15.98 5.56 0.09 -10.42 16 8 C -0.14 -1.72 5.64 -27.88 -0.16 -1.88 16 9 C -0.09 -1.00 4.13 -26.73 -0.11 -1.11 16 10 C 0.07 0.63 3.25 -25.95 -0.08 0.54 16 11 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 12 C -0.15 -0.93 6.63 -25.17 -0.17 -1.10 16 13 C -0.15 -0.89 6.34 -25.17 -0.16 -1.04 16 14 C 0.03 0.23 3.26 -25.96 -0.08 0.15 16 15 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 16 C 0.46 4.25 2.85 37.16 0.11 4.36 16 17 F -0.18 -1.51 17.07 2.25 0.04 -1.47 16 18 F -0.18 -1.90 17.32 2.25 0.04 -1.86 16 19 F -0.17 -1.85 16.56 2.25 0.04 -1.81 16 20 O -0.35 -3.55 10.72 -35.23 -0.38 -3.92 16 21 N -0.72 -16.84 4.56 -53.43 -0.24 -17.08 16 22 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -26.86 13.06 55.49 0.72 -26.14 16 26 Si 0.91 21.59 29.55 -169.99 -5.02 16.57 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.41 6.88 8.14 -40.82 -0.33 6.54 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.10 1.14 8.01 -51.93 -0.42 0.72 16 38 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 39 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 40 H 0.09 0.58 7.87 -51.93 -0.41 0.17 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.54 7.39 -51.93 -0.38 0.16 16 43 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.38 9.70 7.80 -40.82 -0.32 9.38 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 385.70 15.07 5.81 5.81 Total: -1.00 -31.01 385.70 -6.99 -38.00 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.89 Total: 11.07 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -0.86 Total: 3.37 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.16 Total: -55.33 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.29 Total: -14.35 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.11 Total: -5.15 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.01 -6.99 -38.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567023994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.711 kcal (2) G-P(sol) polarization free energy of solvation -31.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds