Wall clock time and date at job start Tue Mar 31 2020 21:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 5 5 N 1.46502 * 109.46925 * 175.00128 * 4 2 1 6 6 C 1.34775 * 119.99947 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99839 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00028 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.47007 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46756 * 180.02562 * 9 8 6 11 11 H 1.08992 * 110.33293 * 307.25158 * 10 9 8 12 12 C 1.54475 * 110.36922 * 184.99989 * 10 9 8 13 13 C 1.54501 * 104.06409 * 217.18864 * 12 10 9 14 14 C 1.54479 * 104.06419 * 0.02562 * 13 12 10 15 15 H 1.08999 * 110.37433 * 265.03925 * 14 13 12 16 16 C 1.52999 * 110.37486 * 142.80782 * 14 13 12 17 17 F 1.39898 * 109.47095 * 60.00177 * 16 14 13 18 18 F 1.39898 * 109.47395 * 180.02562 * 16 14 13 19 19 F 1.39908 * 109.47054 * 299.99976 * 16 14 13 20 20 O 1.44423 * 110.36953 * 69.62193 * 10 9 8 21 21 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 22 22 C 1.36943 * 119.99752 * 84.72207 * 21 2 1 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 2 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 2 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47294 * 90.00155 * 26 24 22 28 28 H 1.48499 * 109.47218 * 210.00015 * 26 24 22 29 29 H 1.48496 * 109.47166 * 329.99846 * 26 24 22 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 32 32 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 33 33 H 1.08997 * 109.47038 * 294.99798 * 4 2 1 34 34 H 1.08999 * 109.47047 * 55.00424 * 4 2 1 35 35 H 0.96997 * 120.00059 * 359.97438 * 5 4 2 36 36 H 1.08992 * 109.47087 * 299.99808 * 8 6 5 37 37 H 1.08999 * 109.46766 * 59.99867 * 8 6 5 38 38 H 1.08997 * 109.47038 * 299.99926 * 9 8 6 39 39 H 1.08991 * 109.46868 * 60.00272 * 9 8 6 40 40 H 1.09005 * 110.51255 * 335.83938 * 12 10 9 41 41 H 1.09003 * 110.51096 * 98.40645 * 12 10 9 42 42 H 1.09003 * 110.51460 * 118.64525 * 13 12 10 43 43 H 1.08997 * 110.51819 * 241.35489 * 13 12 10 44 44 H 0.97001 * 120.00384 * 265.00562 * 21 2 1 45 45 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5699 -1.8842 3.1394 8 6 5.6749 -1.5378 2.1300 9 6 6.1849 -2.2590 3.3793 10 6 7.7098 -2.3686 3.3180 11 1 8.0197 -2.8159 2.3736 12 6 8.2371 -3.2026 4.5066 13 6 9.5574 -2.5030 4.8996 14 6 9.6714 -1.3287 3.9024 15 1 10.2852 -1.6145 3.0482 16 6 10.2620 -0.0983 4.5937 17 9 11.5359 -0.4053 5.0838 18 9 10.3562 0.9526 3.6750 19 9 9.4336 0.2833 5.6546 20 8 8.3144 -1.0675 3.4831 21 7 2.0184 -0.6906 -1.1962 22 6 2.1437 -0.0088 -2.3771 23 1 1.8868 1.0391 -2.4256 24 6 2.6010 -0.6645 -3.5120 25 7 2.9136 -1.9417 -3.4530 26 14 2.7727 0.2657 -5.1227 27 1 4.1349 0.8499 -5.2142 28 1 2.5567 -0.6666 -6.2582 29 1 1.7630 1.3533 -5.1763 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7517 -0.1583 2.1370 34 1 1.6054 -1.7198 1.2951 35 1 3.9824 -0.4628 0.4316 36 1 5.9629 -2.1006 1.2422 37 1 6.1098 -0.5394 2.0843 38 1 5.8969 -1.6958 4.2670 39 1 5.7500 -3.2573 3.4255 40 1 7.5295 -3.1763 5.3354 41 1 8.4245 -4.2311 4.1982 42 1 9.5027 -2.1308 5.9227 43 1 10.3999 -3.1850 4.7850 44 1 2.2490 -1.6318 -1.1527 45 1 3.2335 -2.3998 -4.2459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567023994.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:39 Heat of formation + Delta-G solvation = -262.782662 kcal Electronic energy + Delta-G solvation = -29551.898703 eV Core-core repulsion = 24767.162977 eV Total energy + Delta-G solvation = -4784.735726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.15677 -48.68421 -48.65306 -40.98182 -40.41100 -37.93662 -35.16708 -34.77907 -33.58236 -33.29647 -31.03741 -30.44496 -27.90281 -26.43029 -25.57260 -24.10981 -22.73092 -22.08846 -21.71189 -21.01579 -19.65811 -19.41179 -19.32629 -18.86386 -17.94151 -17.41386 -17.07773 -16.99255 -16.67716 -16.18722 -15.64650 -15.55237 -15.42323 -15.39651 -15.12051 -15.09147 -14.89339 -14.79910 -14.71269 -14.58555 -14.24568 -13.83921 -13.69055 -13.54838 -13.29477 -13.06566 -12.85802 -12.76780 -12.73819 -12.50005 -12.47969 -12.17362 -12.03602 -11.91502 -11.70758 -11.65862 -11.63229 -10.99494 -10.98821 -10.79206 -9.97089 -9.01311 -7.90783 -5.19528 1.50271 1.50949 1.51702 1.59322 1.71506 2.33713 2.35125 2.58752 2.72222 2.93733 3.41816 3.43316 3.46712 3.75031 3.77225 3.87118 3.91282 4.01028 4.01352 4.11875 4.23930 4.39455 4.41739 4.51923 4.62840 4.65046 4.73448 4.76080 4.86345 4.90209 4.92721 5.03588 5.06461 5.10019 5.25844 5.26951 5.44418 5.57297 5.62073 5.63790 6.30245 6.65073 7.30578 7.37751 8.09598 8.34790 9.31905 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.002256 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.054029 B =12410.809297 C =13387.687480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.159 3.841 3 H 0.058 0.942 4 C 0.123 3.877 5 N -0.715 5.715 6 C 0.507 3.493 7 O -0.590 6.590 8 C -0.134 4.134 9 C -0.090 4.090 10 C 0.074 3.926 11 H 0.099 0.901 12 C -0.144 4.144 13 C -0.145 4.145 14 C 0.028 3.972 15 H 0.138 0.862 16 C 0.458 3.542 17 F -0.173 7.173 18 F -0.188 7.188 19 F -0.186 7.186 20 O -0.373 6.373 21 N -0.731 5.731 22 C -0.234 4.234 23 H 0.076 0.924 24 C -0.070 4.070 25 N -0.966 5.966 26 Si 0.967 3.033 27 H -0.287 1.287 28 H -0.301 1.301 29 H -0.274 1.274 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.410 0.590 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.120 0.880 44 H 0.373 0.627 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.294 -1.378 17.970 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.076 0.924 4 C -0.001 4.001 5 N -0.366 5.366 6 C 0.295 3.705 7 O -0.471 6.471 8 C -0.174 4.174 9 C -0.128 4.128 10 C 0.018 3.982 11 H 0.116 0.884 12 C -0.181 4.181 13 C -0.183 4.183 14 C -0.031 4.031 15 H 0.155 0.845 16 C 0.404 3.596 17 F -0.155 7.155 18 F -0.170 7.170 19 F -0.168 7.168 20 O -0.293 6.293 21 N -0.372 5.372 22 C -0.366 4.366 23 H 0.094 0.906 24 C -0.262 4.262 25 N -0.616 5.616 26 Si 0.797 3.203 27 H -0.214 1.214 28 H -0.228 1.228 29 H -0.199 1.199 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.246 0.754 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.128 0.872 42 H 0.100 0.900 43 H 0.139 0.861 44 H 0.205 0.795 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 15.749 -1.289 18.495 24.326 hybrid contribution 0.235 0.428 -1.343 1.429 sum 15.984 -0.861 17.151 23.460 Atomic orbital electron populations 1.22241 0.96895 1.01155 1.01297 1.20672 0.93535 0.95593 0.85169 0.92430 1.21528 0.80276 1.00238 0.98108 1.46071 1.08008 1.58851 1.23648 1.21244 0.91404 0.76494 0.81381 1.90632 1.71615 1.49976 1.34895 1.21669 0.89663 1.04507 1.01558 1.21344 0.92521 1.01894 0.97003 1.23329 0.92898 0.82036 0.99966 0.88371 1.22994 0.96107 1.00895 0.98140 1.23030 1.00547 0.95804 0.98884 1.24332 0.87972 0.90946 0.99839 0.84500 1.20563 0.76233 0.85567 0.77286 1.93201 1.40854 1.92964 1.88462 1.93197 1.96055 1.61162 1.66539 1.93183 1.72202 1.92509 1.58868 1.89212 1.22153 1.29376 1.88566 1.42584 1.78337 1.10365 1.05883 1.19555 1.34914 0.94112 0.88027 0.90594 1.25434 1.03119 0.96699 1.00994 1.69809 1.52644 1.09978 1.29204 0.85243 0.77818 0.77362 0.79911 1.21389 1.22824 1.19869 0.93863 0.90929 0.93682 0.90517 0.93180 0.75369 0.87374 0.87908 0.91830 0.89256 0.90165 0.87221 0.89997 0.86139 0.79463 0.94180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 9.49 71.98 0.68 -4.49 16 2 C 0.16 5.79 3.05 44.99 0.14 5.93 16 3 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 4 C 0.12 4.12 5.23 86.38 0.45 4.58 16 5 N -0.72 -23.31 5.39 -463.06 -2.49 -25.81 16 6 C 0.51 16.00 7.83 87.66 0.69 16.69 16 7 O -0.59 -22.10 15.98 -3.03 -0.05 -22.14 16 8 C -0.13 -3.15 5.64 29.85 0.17 -2.98 16 9 C -0.09 -1.83 4.13 30.60 0.13 -1.71 16 10 C 0.07 1.12 3.25 31.10 0.10 1.22 16 11 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 12 C -0.14 -1.50 6.63 31.61 0.21 -1.29 16 13 C -0.15 -1.37 6.34 31.61 0.20 -1.17 16 14 C 0.03 0.39 3.26 31.10 0.10 0.49 16 15 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 16 C 0.46 8.02 2.85 71.98 0.21 8.23 16 17 F -0.17 -2.72 17.07 44.97 0.77 -1.95 16 18 F -0.19 -4.00 17.32 44.97 0.78 -3.22 16 19 F -0.19 -3.92 16.56 44.97 0.74 -3.17 16 20 O -0.37 -7.19 10.72 -148.98 -1.60 -8.79 16 21 N -0.73 -33.79 4.56 -322.94 -1.47 -35.26 16 22 C -0.23 -12.08 9.93 84.03 0.83 -11.25 16 23 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 24 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 25 N -0.97 -56.23 13.06 21.65 0.28 -55.94 16 26 Si 0.97 44.29 29.55 68.60 2.03 46.32 16 27 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 28 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 29 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.41 13.56 8.14 -92.71 -0.75 12.81 16 36 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.10 2.33 8.01 -2.39 -0.02 2.31 16 38 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 39 H 0.09 1.81 8.10 -2.39 -0.02 1.79 16 40 H 0.08 0.96 7.87 -2.38 -0.02 0.94 16 41 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.08 0.88 7.39 -2.39 -0.02 0.87 16 43 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.37 18.96 7.80 -92.71 -0.72 18.24 16 45 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -66.30 385.70 2.90 -63.40 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.46 Total: 35.66 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 4.37 Total: 10.91 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -3.69 Total: -117.01 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.65 Total: -30.94 kcal Atomic # 9 Polarization: -10.63 SS G_CDS: 2.29 Total: -8.34 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -66.30 2.90 -63.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567023994.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.384 kcal (2) G-P(sol) polarization free energy of solvation -66.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds