Wall clock time and date at job start Tue Mar 31 2020 21:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.53004 * 109.47023 * 240.00219 * 2 1 3 5 5 N 1.46499 * 109.47198 * 185.00121 * 4 2 1 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 4 9 9 C 1.52999 * 109.47004 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47303 * 179.97438 * 9 8 6 11 11 H 1.08996 * 110.33590 * 307.25380 * 10 9 8 12 12 C 1.54488 * 110.37328 * 184.99671 * 10 9 8 13 13 C 1.54502 * 104.06259 * 217.19183 * 12 10 9 14 14 C 1.54480 * 104.06704 * 0.02562 * 13 12 10 15 15 H 1.08999 * 110.37373 * 265.03616 * 14 13 12 16 16 C 1.53002 * 110.36984 * 142.80534 * 14 13 12 17 17 F 1.39900 * 109.47115 * 60.00814 * 16 14 13 18 18 F 1.39909 * 109.46842 * 180.02562 * 16 14 13 19 19 F 1.39898 * 109.47178 * 300.00038 * 16 14 13 20 20 O 1.44428 * 104.80210 * 23.98016 * 14 13 12 21 21 N 1.46494 * 109.47389 * 120.00433 * 2 1 3 22 22 C 1.36939 * 119.99807 * 275.00196 * 21 2 1 23 23 H 1.07997 * 120.00301 * 359.97438 * 22 21 2 24 24 C 1.38816 * 119.99803 * 180.02562 * 22 21 2 25 25 N 1.31619 * 120.00011 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99981 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47498 * 59.99534 * 26 24 22 28 28 H 1.48501 * 109.47231 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.46834 * 299.99495 * 26 24 22 30 30 H 1.09004 * 109.46778 * 300.00011 * 1 2 3 31 31 H 1.09005 * 109.47209 * 59.99074 * 1 2 3 32 32 H 1.08991 * 109.47437 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46730 * 64.99908 * 4 2 1 34 34 H 1.08998 * 109.46846 * 305.00453 * 4 2 1 35 35 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 36 36 H 1.09003 * 109.47112 * 299.99065 * 8 6 5 37 37 H 1.08993 * 109.47916 * 59.99687 * 8 6 5 38 38 H 1.09000 * 109.47527 * 299.99994 * 9 8 6 39 39 H 1.09007 * 109.47302 * 59.99534 * 9 8 6 40 40 H 1.08992 * 110.50815 * 335.84458 * 12 10 9 41 41 H 1.09005 * 110.50575 * 98.41032 * 12 10 9 42 42 H 1.09004 * 110.50986 * 118.64641 * 13 12 10 43 43 H 1.08998 * 110.51343 * 241.35497 * 13 12 10 44 44 H 0.97000 * 120.00254 * 94.99110 * 21 2 1 45 45 H 0.97001 * 120.00421 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1734 -1.4238 -2.1938 7 8 3.5702 -1.8787 -3.1425 8 6 5.6757 -1.5265 -2.1364 9 6 6.1861 -2.2432 -3.3880 10 6 7.7115 -2.3470 -3.3301 11 1 8.1515 -1.3654 -3.1541 12 6 8.2593 -2.9549 -4.6404 13 6 9.4350 -3.8447 -4.1786 14 6 9.4581 -3.6697 -2.6439 15 1 10.1687 -2.8931 -2.3612 16 6 9.8164 -4.9919 -1.9624 17 9 11.0800 -5.4107 -2.3924 18 9 9.8313 -4.8123 -0.5750 19 9 8.8649 -5.9615 -2.2964 20 8 8.1130 -3.2739 -2.2974 21 7 2.0184 -0.6907 1.1960 22 6 2.1491 -0.0076 2.3757 23 1 1.8926 1.0404 2.4242 24 6 2.6124 -0.6619 3.5089 25 7 2.9255 -1.9389 3.4497 26 14 2.7915 0.2700 5.1179 27 1 1.4693 0.8068 5.5289 28 1 3.3016 -0.6482 6.1676 29 1 3.7467 1.3925 4.9361 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7515 -0.1582 -2.1370 34 1 1.6053 -1.7197 -1.2952 35 1 3.9824 -0.4622 -0.4320 36 1 6.1067 -0.5264 -2.0889 37 1 5.9679 -2.0904 -1.2506 38 1 5.7551 -3.2433 -3.4353 39 1 5.8940 -1.6796 -4.2741 40 1 7.4946 -3.5568 -5.1311 41 1 8.6119 -2.1687 -5.3080 42 1 9.2515 -4.8866 -4.4410 43 1 10.3710 -3.4987 -4.6169 44 1 2.2490 -1.6318 1.1525 45 1 3.2489 -2.3963 4.2416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567023995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:43 Heat of formation + Delta-G solvation = -241.933681 kcal Electronic energy + Delta-G solvation = -29682.170283 eV Core-core repulsion = 24898.338636 eV Total energy + Delta-G solvation = -4783.831647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.34462 -47.89482 -47.78563 -40.16821 -39.24507 -36.34946 -33.90160 -33.48798 -32.71280 -31.84445 -30.13735 -28.71760 -26.84083 -25.29508 -23.74203 -23.21129 -22.05605 -21.39928 -20.18480 -19.71699 -18.86209 -18.61507 -18.10421 -17.43342 -16.94400 -16.42454 -16.17230 -15.64738 -15.27986 -14.82259 -14.70954 -14.59140 -14.53734 -14.29076 -14.21042 -13.98874 -13.95425 -13.92303 -13.63115 -13.13586 -13.01569 -12.87460 -12.33240 -12.20800 -12.10128 -12.00760 -11.85966 -11.73567 -11.43203 -11.28404 -11.15495 -10.97880 -10.86169 -10.75457 -10.37052 -10.33194 -10.03295 -9.71554 -9.50305 -8.98076 -8.58573 -7.04442 -5.81009 -3.11698 2.21589 2.99458 3.04903 3.40500 3.42288 3.45644 3.46986 3.56605 3.66136 4.07673 4.16343 4.31852 4.38212 4.54569 4.64339 4.68324 4.85335 4.96071 5.15552 5.24325 5.31205 5.36177 5.39469 5.48109 5.49617 5.58456 5.65349 5.67980 5.90869 5.95847 6.09240 6.12275 6.18997 6.29438 6.34247 6.56511 6.75450 6.87130 7.05443 7.65028 7.98436 8.36213 8.61728 9.47933 10.02991 10.38609 11.40705 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011136 B = 0.002579 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.653515 B =10854.881988 C =12795.042143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.159 3.841 3 H 0.052 0.948 4 C 0.115 3.885 5 N -0.713 5.713 6 C 0.510 3.490 7 O -0.560 6.560 8 C -0.142 4.142 9 C -0.095 4.095 10 C 0.074 3.926 11 H 0.080 0.920 12 C -0.147 4.147 13 C -0.150 4.150 14 C 0.030 3.970 15 H 0.114 0.886 16 C 0.461 3.539 17 F -0.179 7.179 18 F -0.174 7.174 19 F -0.173 7.173 20 O -0.343 6.343 21 N -0.724 5.724 22 C -0.245 4.245 23 H 0.070 0.930 24 C -0.010 4.010 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.411 0.589 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.385 0.615 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.454 -1.204 -17.758 23.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.070 0.930 4 C -0.010 4.010 5 N -0.364 5.364 6 C 0.296 3.704 7 O -0.439 6.439 8 C -0.182 4.182 9 C -0.133 4.133 10 C 0.017 3.983 11 H 0.098 0.902 12 C -0.185 4.185 13 C -0.187 4.187 14 C -0.030 4.030 15 H 0.131 0.869 16 C 0.407 3.593 17 F -0.160 7.160 18 F -0.155 7.155 19 F -0.154 7.154 20 O -0.262 6.262 21 N -0.366 5.366 22 C -0.376 4.376 23 H 0.088 0.912 24 C -0.206 4.206 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.247 0.753 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.903 -1.511 -18.063 23.466 hybrid contribution 0.516 0.135 1.486 1.579 sum 15.419 -1.376 -16.577 22.681 Atomic orbital electron populations 1.22366 0.98388 1.01262 1.00315 1.20504 0.92650 0.95696 0.86235 0.92956 1.21670 0.79793 1.01025 0.98500 1.46019 1.08203 1.58872 1.23304 1.20584 0.89935 0.77543 0.82291 1.90651 1.70667 1.48579 1.34051 1.21646 0.92642 1.02864 1.01039 1.21403 0.90890 1.02906 0.98059 1.23272 0.96645 0.92703 0.85644 0.90176 1.22990 0.97649 0.99706 0.98149 1.22986 1.00745 1.02872 0.92140 1.24095 0.89974 0.92925 0.95983 0.86883 1.20227 0.74492 0.87048 0.77543 1.93193 1.41699 1.91420 1.89714 1.93241 1.96111 1.95348 1.30820 1.93213 1.64276 1.65907 1.92051 1.89301 1.25836 1.63156 1.47915 1.42467 1.78084 1.10841 1.05228 1.19165 1.37207 0.93846 0.87391 0.91211 1.24749 1.01944 0.95907 0.98010 1.69651 1.50310 1.08602 1.29095 0.86291 0.77745 0.78587 0.83638 1.21326 1.21717 1.21263 0.92350 0.94239 0.93218 0.91990 0.91941 0.75294 0.89111 0.88011 0.89896 0.89419 0.89467 0.89564 0.89396 0.88861 0.78053 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.49 37.16 0.35 -2.49 16 2 C 0.16 3.00 3.05 -67.93 -0.21 2.79 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C 0.11 1.97 5.23 -4.04 -0.02 1.95 16 5 N -0.71 -11.81 5.39 -60.29 -0.32 -12.13 16 6 C 0.51 8.16 7.83 -10.99 -0.09 8.07 16 7 O -0.56 -10.52 15.98 5.55 0.09 -10.43 16 8 C -0.14 -1.73 5.64 -27.88 -0.16 -1.88 16 9 C -0.09 -1.01 4.13 -26.73 -0.11 -1.12 16 10 C 0.07 0.63 3.25 -25.95 -0.08 0.54 16 11 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 12 C -0.15 -0.93 6.63 -25.16 -0.17 -1.10 16 13 C -0.15 -0.92 6.34 -25.17 -0.16 -1.08 16 14 C 0.03 0.25 3.26 -25.95 -0.08 0.17 16 15 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 16 C 0.46 4.68 2.85 37.16 0.11 4.79 16 17 F -0.18 -1.64 17.07 2.25 0.04 -1.60 16 18 F -0.17 -2.11 17.32 2.25 0.04 -2.08 16 19 F -0.17 -2.04 16.56 2.25 0.04 -2.00 16 20 O -0.34 -3.77 10.73 -35.23 -0.38 -4.15 16 21 N -0.72 -17.05 4.56 -53.43 -0.24 -17.29 16 22 C -0.25 -6.45 9.93 -15.06 -0.15 -6.59 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 25 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 26 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.41 6.90 8.14 -40.82 -0.33 6.56 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.34 8.01 -51.93 -0.42 0.92 16 38 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 39 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 40 H 0.09 0.59 7.87 -51.93 -0.41 0.18 16 41 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.58 7.39 -51.93 -0.38 0.20 16 43 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.39 9.90 7.80 -40.82 -0.32 9.59 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -31.67 385.71 -6.99 -38.66 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -6.89 Total: 11.34 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.86 Total: 3.69 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.16 Total: -55.99 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.29 Total: -14.58 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.11 Total: -5.68 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.67 -6.99 -38.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567023995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.273 kcal (2) G-P(sol) polarization free energy of solvation -31.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds