Wall clock time and date at job start Tue Mar 31 2020 21:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.53004 * 109.47023 * 240.00219 * 2 1 3 5 5 N 1.46499 * 109.47198 * 185.00121 * 4 2 1 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 4 9 9 C 1.52999 * 109.47004 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47303 * 179.97438 * 9 8 6 11 11 H 1.08996 * 110.33590 * 307.25380 * 10 9 8 12 12 C 1.54488 * 110.37328 * 184.99671 * 10 9 8 13 13 C 1.54502 * 104.06259 * 217.19183 * 12 10 9 14 14 C 1.54480 * 104.06704 * 0.02562 * 13 12 10 15 15 H 1.08999 * 110.37373 * 265.03616 * 14 13 12 16 16 C 1.53002 * 110.36984 * 142.80534 * 14 13 12 17 17 F 1.39900 * 109.47115 * 60.00814 * 16 14 13 18 18 F 1.39909 * 109.46842 * 180.02562 * 16 14 13 19 19 F 1.39898 * 109.47178 * 300.00038 * 16 14 13 20 20 O 1.44428 * 104.80210 * 23.98016 * 14 13 12 21 21 N 1.46494 * 109.47389 * 120.00433 * 2 1 3 22 22 C 1.36939 * 119.99807 * 275.00196 * 21 2 1 23 23 H 1.07997 * 120.00301 * 359.97438 * 22 21 2 24 24 C 1.38816 * 119.99803 * 180.02562 * 22 21 2 25 25 N 1.31619 * 120.00011 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99981 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47498 * 59.99534 * 26 24 22 28 28 H 1.48501 * 109.47231 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.46834 * 299.99495 * 26 24 22 30 30 H 1.09004 * 109.46778 * 300.00011 * 1 2 3 31 31 H 1.09005 * 109.47209 * 59.99074 * 1 2 3 32 32 H 1.08991 * 109.47437 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46730 * 64.99908 * 4 2 1 34 34 H 1.08998 * 109.46846 * 305.00453 * 4 2 1 35 35 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 36 36 H 1.09003 * 109.47112 * 299.99065 * 8 6 5 37 37 H 1.08993 * 109.47916 * 59.99687 * 8 6 5 38 38 H 1.09000 * 109.47527 * 299.99994 * 9 8 6 39 39 H 1.09007 * 109.47302 * 59.99534 * 9 8 6 40 40 H 1.08992 * 110.50815 * 335.84458 * 12 10 9 41 41 H 1.09005 * 110.50575 * 98.41032 * 12 10 9 42 42 H 1.09004 * 110.50986 * 118.64641 * 13 12 10 43 43 H 1.08998 * 110.51343 * 241.35497 * 13 12 10 44 44 H 0.97000 * 120.00254 * 94.99110 * 21 2 1 45 45 H 0.97001 * 120.00421 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1907 6 6 4.1734 -1.4238 -2.1938 7 8 3.5702 -1.8787 -3.1425 8 6 5.6757 -1.5265 -2.1364 9 6 6.1861 -2.2432 -3.3880 10 6 7.7115 -2.3470 -3.3301 11 1 8.1515 -1.3654 -3.1541 12 6 8.2593 -2.9549 -4.6404 13 6 9.4350 -3.8447 -4.1786 14 6 9.4581 -3.6697 -2.6439 15 1 10.1687 -2.8931 -2.3612 16 6 9.8164 -4.9919 -1.9624 17 9 11.0800 -5.4107 -2.3924 18 9 9.8313 -4.8123 -0.5750 19 9 8.8649 -5.9615 -2.2964 20 8 8.1130 -3.2739 -2.2974 21 7 2.0184 -0.6907 1.1960 22 6 2.1491 -0.0076 2.3757 23 1 1.8926 1.0404 2.4242 24 6 2.6124 -0.6619 3.5089 25 7 2.9255 -1.9389 3.4497 26 14 2.7915 0.2700 5.1179 27 1 1.4693 0.8068 5.5289 28 1 3.3016 -0.6482 6.1676 29 1 3.7467 1.3925 4.9361 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7515 -0.1582 -2.1370 34 1 1.6053 -1.7197 -1.2952 35 1 3.9824 -0.4622 -0.4320 36 1 6.1067 -0.5264 -2.0889 37 1 5.9679 -2.0904 -1.2506 38 1 5.7551 -3.2433 -3.4353 39 1 5.8940 -1.6796 -4.2741 40 1 7.4946 -3.5568 -5.1311 41 1 8.6119 -2.1687 -5.3080 42 1 9.2515 -4.8866 -4.4410 43 1 10.3710 -3.4987 -4.6169 44 1 2.2490 -1.6318 1.1525 45 1 3.2489 -2.3963 4.2416 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567023995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:42 Heat of formation + Delta-G solvation = -262.976399 kcal Electronic energy + Delta-G solvation = -29683.082763 eV Core-core repulsion = 24898.338636 eV Total energy + Delta-G solvation = -4784.744127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.16296 -48.68980 -48.66515 -40.97463 -40.40530 -37.93370 -35.16561 -34.77462 -33.58382 -33.29208 -31.03397 -30.44653 -27.90138 -26.42876 -25.57291 -24.10761 -22.72859 -22.07430 -21.70705 -21.01195 -19.66344 -19.41965 -19.32451 -18.86959 -17.92522 -17.42024 -17.15414 -16.87909 -16.67933 -16.23096 -15.63840 -15.55667 -15.43061 -15.39840 -15.11738 -15.09907 -14.89606 -14.80693 -14.71360 -14.53356 -14.30316 -13.79475 -13.70873 -13.54923 -13.28808 -13.06270 -12.84801 -12.73534 -12.72470 -12.51059 -12.46644 -12.22800 -12.02580 -11.91106 -11.70124 -11.65680 -11.62755 -10.98682 -10.97818 -10.78866 -9.96888 -9.02065 -7.90542 -5.19989 1.50616 1.50737 1.52159 1.58382 1.71362 2.34970 2.35821 2.58798 2.72189 2.93261 3.41995 3.43421 3.46680 3.75962 3.77528 3.87583 3.91272 4.01405 4.01509 4.12740 4.25107 4.38845 4.42899 4.52729 4.62928 4.64878 4.73624 4.76251 4.86814 4.89935 4.93857 5.04910 5.06365 5.11213 5.26078 5.27633 5.44822 5.56709 5.62894 5.65715 6.29454 6.65333 7.30830 7.36842 8.09695 8.33928 9.31884 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011136 B = 0.002579 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.653515 B =10854.881988 C =12795.042143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.159 3.841 3 H 0.061 0.939 4 C 0.123 3.877 5 N -0.715 5.715 6 C 0.506 3.494 7 O -0.590 6.590 8 C -0.134 4.134 9 C -0.090 4.090 10 C 0.073 3.927 11 H 0.105 0.895 12 C -0.143 4.143 13 C -0.145 4.145 14 C 0.029 3.971 15 H 0.140 0.860 16 C 0.455 3.545 17 F -0.173 7.173 18 F -0.190 7.190 19 F -0.188 7.188 20 O -0.378 6.378 21 N -0.732 5.732 22 C -0.235 4.235 23 H 0.079 0.921 24 C -0.072 4.072 25 N -0.968 5.968 26 Si 0.968 3.032 27 H -0.282 1.282 28 H -0.302 1.302 29 H -0.275 1.275 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.410 0.590 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.372 0.628 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.538 0.951 -19.134 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.079 0.921 4 C -0.002 4.002 5 N -0.366 5.366 6 C 0.294 3.706 7 O -0.471 6.471 8 C -0.174 4.174 9 C -0.128 4.128 10 C 0.017 3.983 11 H 0.123 0.877 12 C -0.180 4.180 13 C -0.183 4.183 14 C -0.030 4.030 15 H 0.158 0.842 16 C 0.400 3.600 17 F -0.154 7.154 18 F -0.172 7.172 19 F -0.170 7.170 20 O -0.298 6.298 21 N -0.373 5.373 22 C -0.367 4.367 23 H 0.097 0.903 24 C -0.264 4.264 25 N -0.618 5.618 26 Si 0.798 3.202 27 H -0.209 1.209 28 H -0.229 1.229 29 H -0.201 1.201 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.246 0.754 36 H 0.139 0.861 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.133 0.867 42 H 0.097 0.903 43 H 0.141 0.859 44 H 0.204 0.796 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.971 0.688 -19.472 25.193 hybrid contribution 0.128 -0.534 1.838 1.919 sum 16.099 0.154 -17.633 23.878 Atomic orbital electron populations 1.22246 0.96938 1.01040 1.01381 1.20687 0.93512 0.95682 0.85056 0.92073 1.21538 0.80278 1.00081 0.98294 1.46071 1.07987 1.59045 1.23469 1.21259 0.91470 0.76410 0.81414 1.90632 1.71649 1.49696 1.35171 1.21674 0.89733 1.04623 1.01370 1.21362 0.92743 1.01158 0.97564 1.23393 0.94928 0.93659 0.86333 0.87688 1.22998 0.97356 1.00296 0.97357 1.23042 1.02134 1.02565 0.90548 1.24350 0.89410 0.92132 0.97095 0.84221 1.20668 0.74444 0.87839 0.77004 1.93197 1.41217 1.91493 1.89514 1.93204 1.96191 1.95437 1.32320 1.93179 1.64948 1.66738 1.92087 1.89267 1.27403 1.63966 1.49154 1.42614 1.78347 1.10279 1.06106 1.19542 1.34859 0.94193 0.88117 0.90326 1.25480 1.03061 0.96680 1.01190 1.69817 1.52476 1.10208 1.29318 0.85292 0.77797 0.77356 0.79749 1.20862 1.22882 1.20090 0.93658 0.90734 0.94122 0.90072 0.93674 0.75374 0.86064 0.89162 0.92694 0.88480 0.90424 0.86711 0.90310 0.85870 0.79650 0.94276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.19 9.49 71.98 0.68 -4.50 16 2 C 0.16 5.79 3.05 44.99 0.14 5.93 16 3 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 4 C 0.12 4.12 5.23 86.38 0.45 4.57 16 5 N -0.72 -23.34 5.39 -463.05 -2.49 -25.84 16 6 C 0.51 16.00 7.83 87.66 0.69 16.69 16 7 O -0.59 -22.14 15.98 -3.04 -0.05 -22.19 16 8 C -0.13 -3.15 5.64 29.85 0.17 -2.98 16 9 C -0.09 -1.84 4.13 30.59 0.13 -1.72 16 10 C 0.07 1.09 3.25 31.10 0.10 1.19 16 11 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 12 C -0.14 -1.44 6.63 31.61 0.21 -1.23 16 13 C -0.15 -1.45 6.34 31.61 0.20 -1.25 16 14 C 0.03 0.44 3.26 31.10 0.10 0.54 16 15 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 16 C 0.45 9.07 2.85 71.98 0.21 9.27 16 17 F -0.17 -3.01 17.07 44.97 0.77 -2.24 16 18 F -0.19 -4.67 17.32 44.97 0.78 -3.89 16 19 F -0.19 -4.54 16.56 44.97 0.74 -3.80 16 20 O -0.38 -8.00 10.73 -148.98 -1.60 -9.60 16 21 N -0.73 -34.44 4.56 -322.95 -1.47 -35.92 16 22 C -0.24 -12.25 9.93 84.03 0.83 -11.42 16 23 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 24 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 25 N -0.97 -57.94 13.06 21.65 0.28 -57.66 16 26 Si 0.97 44.82 29.55 68.60 2.03 46.85 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 28 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 29 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 30 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 2.42 8.14 -2.38 -0.02 2.41 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.41 13.58 8.14 -92.71 -0.75 12.83 16 36 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.09 2.37 8.01 -2.39 -0.02 2.35 16 38 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 39 H 0.10 1.77 8.10 -2.38 -0.02 1.75 16 40 H 0.08 0.94 7.87 -2.39 -0.02 0.92 16 41 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.08 0.94 7.39 -2.39 -0.02 0.92 16 43 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.37 19.46 7.80 -92.71 -0.72 18.73 16 45 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -69.47 385.71 2.90 -66.57 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: -0.46 Total: 36.09 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 4.37 Total: 11.62 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -3.69 Total: -119.42 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -1.65 Total: -31.79 kcal Atomic # 9 Polarization: -12.22 SS G_CDS: 2.29 Total: -9.93 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -69.47 2.90 -66.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567023995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.405 kcal (2) G-P(sol) polarization free energy of solvation -69.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds