Wall clock time and date at job start Tue Mar 31 2020 20:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46756 * 2 1 4 4 C 1.52997 * 109.46964 * 240.00099 * 2 1 3 5 5 C 1.52999 * 109.47012 * 174.99742 * 4 2 1 6 6 N 1.46504 * 109.47315 * 179.97438 * 5 4 2 7 7 C 1.34769 * 120.00396 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99877 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00250 * 180.02562 * 7 6 5 10 10 S 1.81004 * 109.47187 * 180.02562 * 9 7 6 11 11 C 1.76199 * 99.99938 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00242 * 359.97438 * 11 10 9 13 13 C 1.38799 * 120.00067 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00329 * 179.97438 * 13 11 10 15 15 Si 1.86810 * 119.99681 * 359.97438 * 13 11 10 16 16 H 1.48494 * 109.46989 * 90.00289 * 15 13 11 17 17 H 1.48500 * 109.46740 * 210.00077 * 15 13 11 18 18 H 1.48492 * 109.46887 * 329.99785 * 15 13 11 19 19 N 1.46898 * 109.47312 * 120.00107 * 2 1 3 20 20 C 1.46902 * 110.99986 * 277.54914 * 19 2 1 21 21 H 1.09004 * 109.47308 * 34.29122 * 20 19 2 22 22 C 1.52997 * 109.47543 * 154.29283 * 20 19 2 23 23 C 1.50701 * 109.46866 * 274.29838 * 20 19 2 24 24 C 1.38392 * 120.00295 * 155.00432 * 23 20 19 25 25 N 1.32121 * 119.99525 * 180.02562 * 24 23 20 26 26 C 1.32145 * 120.00458 * 359.97438 * 25 24 23 27 27 C 1.38351 * 120.00336 * 0.25339 * 26 25 24 28 28 N 1.32125 * 119.99708 * 335.01666 * 23 20 19 29 29 H 1.09003 * 109.47349 * 55.63094 * 1 2 3 30 30 H 1.08997 * 109.47141 * 175.63187 * 1 2 3 31 31 H 1.09000 * 109.46801 * 295.63628 * 1 2 3 32 32 H 1.08998 * 109.47026 * 295.00103 * 4 2 1 33 33 H 1.08999 * 109.47124 * 55.00098 * 4 2 1 34 34 H 1.08998 * 109.47520 * 300.00058 * 5 4 2 35 35 H 1.08999 * 109.46885 * 60.00209 * 5 4 2 36 36 H 0.97006 * 119.99427 * 0.02562 * 6 5 4 37 37 H 1.08999 * 109.46788 * 299.99483 * 9 7 6 38 38 H 1.08999 * 109.47103 * 59.99927 * 9 7 6 39 39 H 0.96998 * 120.00409 * 179.97438 * 14 13 11 40 40 H 1.00903 * 110.99808 * 41.49867 * 19 2 1 41 41 H 1.08992 * 109.47523 * 175.35577 * 22 20 19 42 42 H 1.08996 * 109.46964 * 295.36765 * 22 20 19 43 43 H 1.09006 * 109.46402 * 55.35899 * 22 20 19 44 44 H 1.07998 * 120.00202 * 359.97438 * 24 23 20 45 45 H 1.08004 * 120.00192 * 179.97438 * 26 25 24 46 46 H 1.07995 * 120.00348 * 179.73127 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 7 4.0532 -1.3043 -2.5096 7 6 5.3741 -1.3406 -2.7748 8 8 6.1584 -0.8007 -2.0236 9 6 5.8764 -2.0510 -4.0052 10 16 7.6805 -1.9247 -4.0806 11 6 7.9873 -2.8131 -5.5710 12 1 7.1636 -3.2352 -6.1274 13 6 9.2878 -2.9705 -6.0298 14 7 9.5171 -3.6347 -7.1429 15 14 10.7126 -2.2398 -5.0677 16 1 11.2048 -3.2339 -4.0805 17 1 11.8106 -1.8849 -6.0024 18 1 10.2549 -1.0197 -4.3556 19 7 2.0197 -0.6925 1.1994 20 6 2.0254 0.2067 2.3610 21 1 1.1837 0.8958 2.2912 22 6 1.9047 -0.6173 3.6445 23 6 3.3137 0.9883 2.3850 24 6 3.3663 2.2163 3.0209 25 7 4.4957 2.9016 3.0414 26 6 5.5751 2.4143 2.4551 27 6 5.5213 1.1888 1.8153 28 7 4.3928 0.5011 1.7986 29 1 -0.3634 0.5801 -0.8483 30 1 -0.3633 -1.0246 -0.0783 31 1 -0.3633 0.4446 0.9265 32 1 1.7516 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.8532 0.4370 -1.3574 35 1 3.9994 -1.0727 -0.4260 36 1 3.4258 -1.7358 -3.1106 37 1 5.5877 -3.1012 -3.9617 38 1 5.4422 -1.5912 -4.8930 39 1 10.4259 -3.7444 -7.4638 40 1 1.4751 -1.5211 1.3862 41 1 1.9917 0.0412 4.5086 42 1 0.9368 -1.1181 3.6651 43 1 2.6999 -1.3623 3.6740 44 1 2.4841 2.6148 3.4997 45 1 6.4982 2.9747 2.4715 46 1 6.4023 0.7925 1.3324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567209516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:33 Heat of formation + Delta-G solvation = 4.768487 kcal Electronic energy + Delta-G solvation = -26484.197878 eV Core-core repulsion = 22727.966402 eV Total energy + Delta-G solvation = -3756.231475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29197 -39.19131 -38.25605 -35.36496 -34.23147 -33.49252 -32.40145 -31.07116 -30.13686 -28.56013 -28.06792 -25.57588 -25.24897 -24.56758 -23.30875 -21.48990 -21.13580 -20.13192 -17.82097 -17.79006 -17.16762 -16.47212 -16.26020 -16.01624 -15.77916 -15.36895 -15.11474 -14.91730 -14.81449 -14.45211 -13.91359 -13.82357 -13.52503 -13.39557 -13.25108 -13.17022 -12.76196 -12.63582 -12.36385 -12.21826 -11.91933 -11.82577 -11.66576 -11.49815 -11.23490 -11.22579 -11.20116 -11.07782 -10.97120 -10.53861 -9.81911 -9.45099 -9.36759 -9.14809 -8.96950 -8.81881 -8.64441 -8.44350 -6.86216 -6.25353 -3.96132 0.58372 1.03198 2.85941 3.14431 3.35592 3.41915 3.51372 3.53707 3.60118 3.76448 3.80738 4.07964 4.36721 4.38968 4.44258 4.48666 4.64445 4.73940 4.78580 4.81999 4.88058 5.03772 5.11714 5.13093 5.13795 5.18071 5.23366 5.28797 5.35199 5.40421 5.48512 5.51696 5.65238 5.66322 5.74192 5.84250 6.05983 6.09384 6.19125 6.36628 6.62467 6.75179 7.02236 7.17434 7.70225 7.79582 7.97890 8.45488 8.66607 9.21104 10.83977 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.002485 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.457858 B =11265.486670 C =12704.837914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.091 3.909 3 H 0.075 0.925 4 C -0.117 4.117 5 C 0.130 3.870 6 N -0.739 5.739 7 C 0.529 3.471 8 O -0.520 6.520 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.520 4.520 12 H 0.087 0.913 13 C 0.095 3.905 14 N -0.882 5.882 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.275 1.275 18 H -0.235 1.235 19 N -0.660 5.660 20 C 0.139 3.861 21 H 0.065 0.935 22 C -0.151 4.151 23 C 0.084 3.916 24 C 0.041 3.959 25 N -0.440 5.440 26 C 0.039 3.961 27 C 0.059 3.941 28 N -0.392 5.392 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.395 0.605 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.270 0.730 40 H 0.346 0.654 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.161 0.839 45 H 0.168 0.832 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.626 9.091 20.957 31.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.093 0.907 4 C -0.155 4.155 5 C 0.007 3.993 6 N -0.393 5.393 7 C 0.315 3.685 8 O -0.394 6.394 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.668 4.668 12 H 0.105 0.895 13 C -0.114 4.114 14 N -0.519 5.519 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.159 1.159 19 N -0.292 5.292 20 C 0.027 3.973 21 H 0.082 0.918 22 C -0.209 4.209 23 C -0.058 4.058 24 C -0.120 4.120 25 N -0.154 5.154 26 C -0.121 4.121 27 C -0.101 4.101 28 N -0.106 5.106 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.228 0.772 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.166 0.834 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.178 0.822 45 H 0.185 0.815 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -19.504 10.033 21.945 31.026 hybrid contribution -1.375 -0.532 -0.927 1.741 sum -20.878 9.501 21.018 31.111 Atomic orbital electron populations 1.22529 0.97013 1.02488 1.02223 1.21484 0.92132 0.98075 0.90307 0.90698 1.21750 0.95714 1.01308 0.96774 1.21233 0.92678 0.96944 0.88489 1.46033 1.07509 1.58315 1.27451 1.20187 0.81827 0.79898 0.86629 1.90676 1.54985 1.44660 1.49106 1.23284 1.02811 1.03222 0.98141 1.84747 0.98547 1.73715 1.34594 1.22336 0.97233 1.39214 1.07997 0.89452 1.24719 0.98309 0.93920 0.94427 1.69938 1.21656 1.39540 1.20729 0.86726 0.82397 0.82055 0.80628 1.19217 1.20025 1.15895 1.60346 1.59136 1.07757 1.01965 1.20264 0.91370 0.93899 0.91728 0.91755 1.21952 1.02859 1.00533 0.95553 1.22275 0.95802 0.93208 0.94527 1.23452 0.97183 0.92808 0.98534 1.68425 0.99191 1.33068 1.14763 1.23802 0.97824 0.95467 0.94987 1.24063 0.97439 0.92616 0.95974 1.68458 0.97854 1.32215 1.12064 0.91842 0.92075 0.92681 0.91126 0.91461 0.93118 0.88985 0.77168 0.88679 0.88721 0.91994 0.83405 0.91665 0.91650 0.90984 0.82196 0.81529 0.81012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.92 9.17 37.16 0.34 -0.58 16 2 C 0.09 0.63 2.41 -67.71 -0.16 0.47 16 3 H 0.07 0.64 7.69 -51.93 -0.40 0.25 16 4 C -0.12 -0.96 5.00 -26.73 -0.13 -1.09 16 5 C 0.13 1.61 5.56 -4.04 -0.02 1.58 16 6 N -0.74 -10.06 5.56 -60.30 -0.33 -10.39 16 7 C 0.53 9.81 7.85 -10.99 -0.09 9.73 16 8 O -0.52 -11.53 15.86 5.56 0.09 -11.44 16 9 C -0.12 -2.47 6.16 36.01 0.22 -2.25 16 10 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 11 C -0.52 -15.20 10.04 30.94 0.31 -14.89 16 12 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 13 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 14 N -0.88 -26.89 13.97 55.49 0.78 -26.12 16 15 Si 0.86 22.03 27.74 -169.99 -4.72 17.32 16 16 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 19 N -0.66 -4.70 5.07 -100.95 -0.51 -5.22 16 20 C 0.14 0.90 2.68 -68.86 -0.18 0.71 16 21 H 0.06 0.32 6.89 -51.93 -0.36 -0.03 16 22 C -0.15 -0.78 9.15 37.16 0.34 -0.44 16 23 C 0.08 0.77 5.57 -82.41 -0.46 0.31 16 24 C 0.04 0.36 10.90 -17.37 -0.19 0.17 16 25 N -0.44 -4.64 10.50 -13.06 -0.14 -4.78 16 26 C 0.04 0.38 11.22 -17.38 -0.20 0.19 16 27 C 0.06 0.65 11.23 -17.37 -0.19 0.46 16 28 N -0.39 -4.54 9.90 -9.28 -0.09 -4.63 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.24 7.20 -51.93 -0.37 -0.13 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.34 7.75 -51.93 -0.40 0.94 16 36 H 0.40 4.18 8.47 -40.82 -0.35 3.84 16 37 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 38 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 39 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.35 2.00 8.14 -39.29 -0.32 1.68 16 41 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 45 H 0.17 1.22 8.06 -52.48 -0.42 0.79 16 46 H 0.17 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 398.61 15.07 6.01 6.01 Total: -1.00 -36.06 398.61 -8.70 -44.76 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.27 Total: 3.08 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -0.51 Total: -2.92 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.30 Total: -51.13 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.72 Total: 17.32 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.06 -8.70 -44.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567209516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.531 kcal (2) G-P(sol) polarization free energy of solvation -36.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds