Wall clock time and date at job start Tue Mar 31 2020 20:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46756 * 2 1 4 4 C 1.52997 * 109.46964 * 240.00099 * 2 1 3 5 5 C 1.52999 * 109.47012 * 174.99742 * 4 2 1 6 6 N 1.46504 * 109.47315 * 179.97438 * 5 4 2 7 7 C 1.34769 * 120.00396 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99877 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00250 * 180.02562 * 7 6 5 10 10 S 1.81004 * 109.47187 * 180.02562 * 9 7 6 11 11 C 1.76199 * 99.99938 * 180.02562 * 10 9 7 12 12 H 1.07996 * 120.00242 * 359.97438 * 11 10 9 13 13 C 1.38799 * 120.00067 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00329 * 179.97438 * 13 11 10 15 15 Si 1.86810 * 119.99681 * 359.97438 * 13 11 10 16 16 H 1.48494 * 109.46989 * 90.00289 * 15 13 11 17 17 H 1.48500 * 109.46740 * 210.00077 * 15 13 11 18 18 H 1.48492 * 109.46887 * 329.99785 * 15 13 11 19 19 N 1.46898 * 109.47312 * 120.00107 * 2 1 3 20 20 C 1.46902 * 110.99986 * 277.54914 * 19 2 1 21 21 H 1.09004 * 109.47308 * 34.29122 * 20 19 2 22 22 C 1.52997 * 109.47543 * 154.29283 * 20 19 2 23 23 C 1.50701 * 109.46866 * 274.29838 * 20 19 2 24 24 C 1.38392 * 120.00295 * 155.00432 * 23 20 19 25 25 N 1.32121 * 119.99525 * 180.02562 * 24 23 20 26 26 C 1.32145 * 120.00458 * 359.97438 * 25 24 23 27 27 C 1.38351 * 120.00336 * 0.25339 * 26 25 24 28 28 N 1.32125 * 119.99708 * 335.01666 * 23 20 19 29 29 H 1.09003 * 109.47349 * 55.63094 * 1 2 3 30 30 H 1.08997 * 109.47141 * 175.63187 * 1 2 3 31 31 H 1.09000 * 109.46801 * 295.63628 * 1 2 3 32 32 H 1.08998 * 109.47026 * 295.00103 * 4 2 1 33 33 H 1.08999 * 109.47124 * 55.00098 * 4 2 1 34 34 H 1.08998 * 109.47520 * 300.00058 * 5 4 2 35 35 H 1.08999 * 109.46885 * 60.00209 * 5 4 2 36 36 H 0.97006 * 119.99427 * 0.02562 * 6 5 4 37 37 H 1.08999 * 109.46788 * 299.99483 * 9 7 6 38 38 H 1.08999 * 109.47103 * 59.99927 * 9 7 6 39 39 H 0.96998 * 120.00409 * 179.97438 * 14 13 11 40 40 H 1.00903 * 110.99808 * 41.49867 * 19 2 1 41 41 H 1.08992 * 109.47523 * 175.35577 * 22 20 19 42 42 H 1.08996 * 109.46964 * 295.36765 * 22 20 19 43 43 H 1.09006 * 109.46402 * 55.35899 * 22 20 19 44 44 H 1.07998 * 120.00202 * 359.97438 * 24 23 20 45 45 H 1.08004 * 120.00192 * 179.97438 * 26 25 24 46 46 H 1.07995 * 120.00348 * 179.73127 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 7 4.0532 -1.3043 -2.5096 7 6 5.3741 -1.3406 -2.7748 8 8 6.1584 -0.8007 -2.0236 9 6 5.8764 -2.0510 -4.0052 10 16 7.6805 -1.9247 -4.0806 11 6 7.9873 -2.8131 -5.5710 12 1 7.1636 -3.2352 -6.1274 13 6 9.2878 -2.9705 -6.0298 14 7 9.5171 -3.6347 -7.1429 15 14 10.7126 -2.2398 -5.0677 16 1 11.2048 -3.2339 -4.0805 17 1 11.8106 -1.8849 -6.0024 18 1 10.2549 -1.0197 -4.3556 19 7 2.0197 -0.6925 1.1994 20 6 2.0254 0.2067 2.3610 21 1 1.1837 0.8958 2.2912 22 6 1.9047 -0.6173 3.6445 23 6 3.3137 0.9883 2.3850 24 6 3.3663 2.2163 3.0209 25 7 4.4957 2.9016 3.0414 26 6 5.5751 2.4143 2.4551 27 6 5.5213 1.1888 1.8153 28 7 4.3928 0.5011 1.7986 29 1 -0.3634 0.5801 -0.8483 30 1 -0.3633 -1.0246 -0.0783 31 1 -0.3633 0.4446 0.9265 32 1 1.7516 -1.7715 -1.2056 33 1 1.6054 -0.2617 -2.1369 34 1 3.8532 0.4370 -1.3574 35 1 3.9994 -1.0727 -0.4260 36 1 3.4258 -1.7358 -3.1106 37 1 5.5877 -3.1012 -3.9617 38 1 5.4422 -1.5912 -4.8930 39 1 10.4259 -3.7444 -7.4638 40 1 1.4751 -1.5211 1.3862 41 1 1.9917 0.0412 4.5086 42 1 0.9368 -1.1181 3.6651 43 1 2.6999 -1.3623 3.6740 44 1 2.4841 2.6148 3.4997 45 1 6.4982 2.9747 2.4715 46 1 6.4023 0.7925 1.3324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567209516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:33 Heat of formation + Delta-G solvation = -22.728209 kcal Electronic energy + Delta-G solvation = -26485.390224 eV Core-core repulsion = 22727.966402 eV Total energy + Delta-G solvation = -3757.423822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.00852 -40.57528 -38.92688 -36.32799 -35.09189 -34.66977 -34.31531 -31.97463 -31.23400 -29.36156 -28.81056 -27.83684 -25.91111 -25.29278 -24.20807 -22.10313 -22.01007 -21.31683 -19.85267 -18.53574 -17.87854 -17.78423 -17.23531 -17.11214 -16.98997 -16.77231 -16.26433 -16.02250 -15.67133 -15.53346 -15.12411 -14.94108 -14.82606 -14.65777 -14.09928 -13.88193 -13.79445 -13.56809 -13.34042 -13.28013 -13.01130 -12.88681 -12.69118 -12.55477 -12.42553 -12.37313 -12.17909 -12.07027 -11.89784 -11.84140 -11.74170 -11.16739 -10.92236 -10.52462 -10.14758 -10.03614 -9.88676 -9.21768 -8.98474 -8.51235 -6.21626 -0.13516 0.27146 1.00368 1.31672 1.47580 1.57512 1.63794 2.24884 2.33312 2.74236 2.79629 2.86908 3.06921 3.18705 3.41638 3.69610 3.84328 3.88176 3.91903 4.15350 4.21459 4.23706 4.27820 4.29397 4.42206 4.46610 4.47711 4.50998 4.57358 4.60918 4.76321 4.79779 4.93006 4.97221 5.07163 5.20733 5.28440 5.32703 5.35854 5.48622 5.54775 5.71205 6.10716 6.11680 6.42411 6.56064 6.62436 6.94025 6.96864 7.28086 8.61234 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014871 B = 0.002485 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.457858 B =11265.486670 C =12704.837914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.096 3.904 3 H 0.057 0.943 4 C -0.108 4.108 5 C 0.138 3.862 6 N -0.714 5.714 7 C 0.530 3.470 8 O -0.562 6.562 9 C -0.110 4.110 10 S -0.175 6.175 11 C -0.528 4.528 12 H 0.062 0.938 13 C 0.045 3.955 14 N -0.917 5.917 15 Si 0.915 3.085 16 H -0.262 1.262 17 H -0.259 1.259 18 H -0.237 1.237 19 N -0.675 5.675 20 C 0.142 3.858 21 H 0.087 0.913 22 C -0.144 4.144 23 C 0.079 3.921 24 C 0.043 3.957 25 N -0.459 5.459 26 C 0.035 3.965 27 C 0.037 3.963 28 N -0.418 5.418 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.414 0.586 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.277 0.723 40 H 0.355 0.645 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.193 0.807 45 H 0.186 0.814 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.170 9.596 22.258 34.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.014 4.014 3 H 0.075 0.925 4 C -0.147 4.147 5 C 0.015 3.985 6 N -0.368 5.368 7 C 0.316 3.684 8 O -0.440 6.440 9 C -0.261 4.261 10 S 0.051 5.949 11 C -0.676 4.676 12 H 0.080 0.920 13 C -0.160 4.160 14 N -0.556 5.556 15 Si 0.737 3.263 16 H -0.187 1.187 17 H -0.183 1.183 18 H -0.161 1.161 19 N -0.309 5.309 20 C 0.030 3.970 21 H 0.105 0.895 22 C -0.202 4.202 23 C -0.063 4.063 24 C -0.118 4.118 25 N -0.174 5.174 26 C -0.123 4.123 27 C -0.122 4.122 28 N -0.133 5.133 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.250 0.750 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.086 0.914 40 H 0.176 0.824 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.210 0.790 45 H 0.203 0.797 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -22.089 10.520 23.227 33.736 hybrid contribution -0.765 -0.713 -1.314 1.679 sum -22.854 9.807 21.913 33.146 Atomic orbital electron populations 1.22430 0.94836 1.03211 1.02855 1.21373 0.93618 0.96740 0.89685 0.92499 1.21737 0.92119 1.02590 0.98215 1.21221 0.95553 0.95021 0.86741 1.45848 1.06021 1.57071 1.27848 1.19965 0.83168 0.79557 0.85757 1.90672 1.56416 1.46648 1.50271 1.23273 0.98200 1.04829 0.99827 1.84696 1.04346 1.73193 1.32636 1.22470 0.96789 1.39277 1.09069 0.91991 1.25569 1.00825 0.94308 0.95336 1.70013 1.22725 1.40723 1.22090 0.85862 0.79641 0.81252 0.79592 1.18677 1.18293 1.16095 1.60240 1.59886 1.08414 1.02315 1.20371 0.90446 0.94173 0.91990 0.89526 1.21908 1.03204 1.00009 0.95096 1.22806 0.96151 0.93656 0.93717 1.23986 0.97608 0.92453 0.97716 1.68477 0.99865 1.33703 1.15355 1.24018 0.98593 0.95147 0.94580 1.24039 0.97520 0.93509 0.97105 1.68411 0.98640 1.33142 1.13107 0.91735 0.91183 0.91646 0.89775 0.90116 0.95288 0.91047 0.74951 0.87018 0.87030 0.91366 0.82374 0.90948 0.89467 0.93182 0.79042 0.79738 0.81934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 9.17 71.98 0.66 -0.49 16 2 C 0.10 1.14 2.41 44.92 0.11 1.25 16 3 H 0.06 0.90 7.69 -2.39 -0.02 0.88 16 4 C -0.11 -1.52 5.00 30.59 0.15 -1.36 16 5 C 0.14 3.30 5.56 86.38 0.48 3.78 16 6 N -0.71 -18.37 5.56 -463.07 -2.57 -20.94 16 7 C 0.53 19.34 7.85 87.66 0.69 20.02 16 8 O -0.56 -25.24 15.86 -3.03 -0.05 -25.29 16 9 C -0.11 -4.30 6.16 71.24 0.44 -3.87 16 10 S -0.18 -9.07 18.55 -56.49 -1.05 -10.11 16 11 C -0.53 -31.26 10.04 67.95 0.68 -30.58 16 12 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 13 C 0.04 2.67 5.50 84.86 0.47 3.14 16 14 N -0.92 -56.47 13.97 21.65 0.30 -56.17 16 15 Si 0.91 45.66 27.74 68.60 1.90 47.57 16 16 H -0.26 -12.76 7.11 99.48 0.71 -12.06 16 17 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 19 N -0.68 -8.39 5.07 -473.30 -2.40 -10.79 16 20 C 0.14 1.53 2.68 44.17 0.12 1.65 16 21 H 0.09 0.58 6.89 -2.38 -0.02 0.56 16 22 C -0.14 -1.19 9.15 71.98 0.66 -0.53 16 23 C 0.08 1.39 5.57 42.55 0.24 1.63 16 24 C 0.04 0.71 10.90 84.69 0.92 1.63 16 25 N -0.46 -9.46 10.50 -195.22 -2.05 -11.50 16 26 C 0.03 0.71 11.22 84.67 0.95 1.66 16 27 C 0.04 0.87 11.23 84.67 0.95 1.83 16 28 N -0.42 -9.95 9.90 -183.28 -1.81 -11.77 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.06 0.33 7.20 -2.39 -0.02 0.31 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 2.08 7.75 -2.39 -0.02 2.06 16 36 H 0.41 7.66 8.47 -92.70 -0.79 6.88 16 37 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 38 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 39 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 40 H 0.36 3.22 8.14 -89.69 -0.73 2.49 16 41 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 44 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 45 H 0.19 2.78 8.06 -2.91 -0.02 2.76 16 46 H 0.16 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -79.89 398.61 -0.77 -80.67 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -0.56 Total: 18.59 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 7.52 Total: -0.24 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -8.53 Total: -111.18 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.29 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.90 Total: 47.57 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.05 Total: -10.11 kcal Total: -79.89 -0.77 -80.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567209516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.937 kcal (2) G-P(sol) polarization free energy of solvation -79.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds