Wall clock time and date at job start Tue Mar 31 2020 20:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46250 * 2 1 4 4 C 1.53001 * 109.47005 * 240.00031 * 2 1 3 5 5 C 1.53004 * 109.46847 * 174.99575 * 4 2 1 6 6 N 1.46500 * 109.46784 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99699 * 180.02562 * 6 5 4 8 8 O 1.21552 * 119.99819 * 359.97438 * 7 6 5 9 9 C 1.47844 * 119.99872 * 180.02562 * 7 6 5 10 10 C 1.39583 * 120.14472 * 179.97438 * 9 7 6 11 11 C 1.37956 * 119.85210 * 180.02562 * 10 9 7 12 12 C 1.38358 * 120.14645 * 0.02562 * 11 10 9 13 13 P 1.81399 * 119.85210 * 179.97438 * 12 11 10 14 14 C 1.82300 * 109.47008 * 209.99962 * 13 12 11 15 15 C 1.82295 * 109.47272 * 90.00115 * 13 12 11 16 16 O 1.48006 * 109.47080 * 329.99704 * 13 12 11 17 17 C 1.38360 * 120.29367 * 0.27179 * 12 11 10 18 18 C 1.37963 * 120.14326 * 359.44812 * 17 12 11 19 19 N 1.46491 * 109.47240 * 119.99964 * 2 1 3 20 20 C 1.36943 * 120.00340 * 275.00046 * 19 2 1 21 21 H 1.07995 * 119.99415 * 0.02562 * 20 19 2 22 22 C 1.38808 * 120.00154 * 180.02562 * 20 19 2 23 23 N 1.31622 * 120.00204 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99912 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47332 * 89.99827 * 24 22 20 26 26 H 1.48503 * 109.47191 * 210.00157 * 24 22 20 27 27 H 1.48503 * 109.46972 * 330.00045 * 24 22 20 28 28 H 1.08995 * 109.47478 * 60.00599 * 1 2 3 29 29 H 1.09003 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47445 * 299.99308 * 1 2 3 31 31 H 1.09007 * 109.46781 * 54.99890 * 4 2 1 32 32 H 1.08993 * 109.47088 * 295.00022 * 4 2 1 33 33 H 1.08999 * 109.46574 * 60.00491 * 5 4 2 34 34 H 1.08997 * 109.46796 * 300.00376 * 5 4 2 35 35 H 0.96994 * 120.00314 * 0.02562 * 6 5 4 36 36 H 1.08002 * 120.06740 * 0.02562 * 10 9 7 37 37 H 1.08003 * 119.92308 * 179.97438 * 11 10 9 38 38 H 1.09001 * 109.47243 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.47611 * 300.00206 * 14 13 12 40 40 H 1.09004 * 109.46913 * 60.00370 * 14 13 12 41 41 H 1.09004 * 109.46990 * 299.99834 * 15 13 12 42 42 H 1.09002 * 109.47217 * 59.99880 * 15 13 12 43 43 H 1.09001 * 109.47496 * 180.02562 * 15 13 12 44 44 H 1.07994 * 119.92598 * 179.70563 * 17 12 11 45 45 H 1.07995 * 120.07418 * 180.25970 * 18 17 12 46 46 H 0.96997 * 120.00186 * 94.99967 * 19 2 1 47 47 H 0.96993 * 119.99865 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 7 4.0531 -1.3033 -2.5102 7 6 5.3740 -1.3393 -2.7755 8 8 6.1601 -0.7988 -2.0222 9 6 5.8667 -2.0352 -3.9832 10 6 7.2341 -2.0740 -4.2612 11 6 7.6872 -2.7246 -5.3902 12 6 6.7895 -3.3374 -6.2463 13 15 7.3940 -4.1900 -7.7289 14 6 6.1279 -4.1045 -9.0378 15 6 7.7374 -5.9351 -7.3289 16 8 8.6362 -3.5383 -8.2009 17 6 5.4324 -3.2974 -5.9799 18 6 4.9665 -2.6551 -4.8513 19 7 2.0184 -0.6906 1.1961 20 6 2.1492 -0.0075 2.3758 21 1 1.8919 1.0403 2.4243 22 6 2.6124 -0.6617 3.5090 23 7 2.9255 -1.9388 3.4499 24 14 2.7902 0.2700 5.1182 25 1 1.5226 0.1777 5.8863 26 1 3.8953 -0.3225 5.9138 27 1 3.0940 1.6955 4.8339 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.6053 -0.2617 -2.1370 32 1 1.7517 -1.7714 -1.2056 33 1 3.9995 -1.0727 -0.4260 34 1 3.8531 0.4371 -1.3573 35 1 3.4258 -1.7342 -3.1115 36 1 7.9357 -1.5956 -3.5938 37 1 8.7449 -2.7549 -5.6065 38 1 6.4913 -4.6164 -9.9288 39 1 5.2130 -4.5844 -8.6903 40 1 5.9226 -3.0610 -9.2770 41 1 8.4944 -5.9862 -6.5463 42 1 6.8225 -6.4150 -6.9813 43 1 8.1011 -6.4474 -8.2196 44 1 4.7367 -3.7737 -6.6548 45 1 3.9073 -2.6282 -4.6423 46 1 2.2491 -1.6317 1.1526 47 1 3.2488 -2.3960 4.2418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567240683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:53 Heat of formation + Delta-G solvation = -66.212557 kcal Electronic energy + Delta-G solvation = -25672.379911 eV Core-core repulsion = 21934.019693 eV Total energy + Delta-G solvation = -3738.360218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -40.31947 -38.45323 -36.63718 -34.56422 -33.39758 -32.41745 -31.59298 -31.44724 -29.44783 -29.14851 -28.17329 -28.08215 -24.57966 -23.69686 -23.15775 -22.27462 -20.73484 -19.80537 -18.41525 -17.31238 -17.03859 -16.25665 -15.51390 -15.27282 -15.22880 -15.02844 -14.79929 -14.30705 -14.14585 -14.08969 -13.91486 -13.87446 -13.54112 -13.52591 -13.38942 -13.29910 -12.90176 -12.59109 -12.54139 -12.36544 -12.09358 -11.93929 -11.65170 -11.55855 -11.16355 -10.96288 -10.79009 -10.67407 -10.36033 -10.17538 -10.08836 -10.05473 -9.84511 -9.66444 -9.63511 -9.47073 -8.98637 -8.89318 -6.98133 -5.77333 -3.06316 0.19144 0.88605 1.09590 2.55514 3.10083 3.43669 3.47836 3.49205 3.50827 4.05560 4.19138 4.24545 4.39609 4.39870 4.48647 4.52761 4.59009 4.80431 4.86643 4.95754 5.04643 5.18409 5.27593 5.32386 5.40514 5.47332 5.49355 5.51931 5.60538 5.63589 5.76205 5.81792 5.92685 5.99802 6.12125 6.27031 6.33283 6.37264 6.41100 6.57452 6.63770 6.81416 7.01308 7.10836 7.46628 7.70003 8.16453 8.40929 9.52352 10.08288 10.42743 11.45281 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021276 B = 0.001893 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.723029 B =14785.998358 C =15392.131901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.133 4.133 5 C 0.121 3.879 6 N -0.721 5.721 7 C 0.545 3.455 8 O -0.524 6.524 9 C -0.090 4.090 10 C -0.078 4.078 11 C -0.046 4.046 12 C -0.713 4.713 13 P 2.558 2.442 14 C -0.810 4.810 15 C -0.809 4.809 16 O -1.002 7.002 17 C -0.083 4.083 18 C -0.106 4.106 19 N -0.724 5.724 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.395 0.605 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 -6.949 -27.476 28.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.171 4.171 5 C -0.002 4.002 6 N -0.372 5.372 7 C 0.331 3.669 8 O -0.401 6.401 9 C -0.093 4.093 10 C -0.097 4.097 11 C -0.063 4.063 12 C -0.703 4.703 13 P 2.627 2.373 14 C -0.855 4.855 15 C -0.854 4.854 16 O -1.105 7.105 17 C -0.101 4.101 18 C -0.125 4.125 19 N -0.366 5.366 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.207 1.207 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.230 0.770 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.128 0.872 39 H 0.109 0.891 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.380 -6.821 -26.451 27.666 hybrid contribution -1.401 -0.619 1.094 1.883 sum 2.979 -7.440 -25.357 26.593 Atomic orbital electron populations 1.22426 0.99092 1.00819 1.00013 1.20150 0.91914 0.95611 0.85946 0.93203 1.22072 0.93726 1.01831 0.99503 1.21537 0.94564 0.97305 0.86765 1.46065 1.06832 1.56690 1.27610 1.18258 0.82829 0.80635 0.85182 1.90831 1.55251 1.45195 1.48844 1.20365 0.94904 0.98680 0.95335 1.21570 0.94666 0.96568 0.96868 1.21040 1.00347 0.93017 0.91940 1.33225 1.00443 1.14577 1.22021 0.89760 0.52150 0.48658 0.46682 1.31854 1.20831 1.10073 1.22782 1.31837 1.09664 1.32702 1.11162 1.95066 1.52900 1.79189 1.83346 1.20899 0.94246 0.98000 0.96956 1.21416 0.99568 0.97070 0.94446 1.42449 1.78110 1.10635 1.05356 1.19219 1.36541 0.93879 0.87310 0.91173 1.24736 1.02100 0.95989 0.98107 1.69653 1.50895 1.08694 1.28875 0.86203 0.77224 0.78886 0.83962 1.21820 1.21789 1.20732 0.94579 0.93554 0.92644 0.91906 0.91610 0.89397 0.91474 0.77044 0.83693 0.83143 0.87219 0.89149 0.86943 0.86989 0.89115 0.87336 0.85346 0.85124 0.78325 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.49 37.16 0.35 -2.44 16 2 C 0.17 3.27 2.89 -67.93 -0.20 3.07 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C -0.13 -1.96 4.87 -26.73 -0.13 -2.09 16 5 C 0.12 1.97 5.56 -4.04 -0.02 1.95 16 6 N -0.72 -9.62 5.51 -61.25 -0.34 -9.96 16 7 C 0.55 8.26 7.77 -12.33 -0.10 8.17 16 8 O -0.52 -10.22 16.35 5.32 0.09 -10.13 16 9 C -0.09 -1.07 5.87 -104.96 -0.62 -1.68 16 10 C -0.08 -0.87 9.60 -39.18 -0.38 -1.25 16 11 C -0.05 -0.40 9.67 -39.64 -0.38 -0.78 16 12 C -0.71 -4.87 6.19 -39.49 -0.24 -5.12 16 13 P 2.56 11.66 5.23 -42.89 -0.22 11.43 16 14 C -0.81 -3.04 10.53 101.05 1.06 -1.97 16 15 C -0.81 -3.49 11.06 101.05 1.12 -2.37 16 16 O -1.00 -8.89 18.40 21.61 0.40 -8.49 16 17 C -0.08 -0.55 9.56 -39.64 -0.38 -0.93 16 18 C -0.11 -0.93 9.54 -39.18 -0.37 -1.30 16 19 N -0.72 -17.52 4.57 -53.43 -0.24 -17.76 16 20 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 24 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.80 7.75 -51.93 -0.40 1.40 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.39 3.85 6.51 -40.82 -0.27 3.58 16 36 H 0.15 1.65 7.65 -52.49 -0.40 1.25 16 37 H 0.15 0.98 8.03 -52.48 -0.42 0.56 16 38 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.18 7.64 -51.93 -0.40 -0.21 16 40 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.13 0.37 7.25 -52.49 -0.38 -0.02 16 45 H 0.13 0.82 6.41 -52.49 -0.34 0.49 16 46 H 0.38 9.91 7.80 -40.82 -0.32 9.59 16 47 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 404.83 15.07 6.10 6.10 Total: -1.00 -37.89 404.83 -6.59 -44.48 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -7.54 Total: 8.13 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -0.53 Total: -13.91 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.14 Total: -55.19 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.48 Total: -18.62 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Atomic # 15 Polarization: 11.66 SS G_CDS: -0.22 Total: 11.43 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -37.89 -6.59 -44.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567240683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.736 kcal (2) G-P(sol) polarization free energy of solvation -37.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds