Wall clock time and date at job start Tue Mar 31 2020 20:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46250 * 2 1 4 4 C 1.53001 * 109.47005 * 240.00031 * 2 1 3 5 5 C 1.53004 * 109.46847 * 174.99575 * 4 2 1 6 6 N 1.46500 * 109.46784 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99699 * 180.02562 * 6 5 4 8 8 O 1.21552 * 119.99819 * 359.97438 * 7 6 5 9 9 C 1.47844 * 119.99872 * 180.02562 * 7 6 5 10 10 C 1.39583 * 120.14472 * 179.97438 * 9 7 6 11 11 C 1.37956 * 119.85210 * 180.02562 * 10 9 7 12 12 C 1.38358 * 120.14645 * 0.02562 * 11 10 9 13 13 P 1.81399 * 119.85210 * 179.97438 * 12 11 10 14 14 C 1.82300 * 109.47008 * 209.99962 * 13 12 11 15 15 C 1.82295 * 109.47272 * 90.00115 * 13 12 11 16 16 O 1.48006 * 109.47080 * 329.99704 * 13 12 11 17 17 C 1.38360 * 120.29367 * 0.27179 * 12 11 10 18 18 C 1.37963 * 120.14326 * 359.44812 * 17 12 11 19 19 N 1.46491 * 109.47240 * 119.99964 * 2 1 3 20 20 C 1.36943 * 120.00340 * 275.00046 * 19 2 1 21 21 H 1.07995 * 119.99415 * 0.02562 * 20 19 2 22 22 C 1.38808 * 120.00154 * 180.02562 * 20 19 2 23 23 N 1.31622 * 120.00204 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99912 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47332 * 89.99827 * 24 22 20 26 26 H 1.48503 * 109.47191 * 210.00157 * 24 22 20 27 27 H 1.48503 * 109.46972 * 330.00045 * 24 22 20 28 28 H 1.08995 * 109.47478 * 60.00599 * 1 2 3 29 29 H 1.09003 * 109.46968 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47445 * 299.99308 * 1 2 3 31 31 H 1.09007 * 109.46781 * 54.99890 * 4 2 1 32 32 H 1.08993 * 109.47088 * 295.00022 * 4 2 1 33 33 H 1.08999 * 109.46574 * 60.00491 * 5 4 2 34 34 H 1.08997 * 109.46796 * 300.00376 * 5 4 2 35 35 H 0.96994 * 120.00314 * 0.02562 * 6 5 4 36 36 H 1.08002 * 120.06740 * 0.02562 * 10 9 7 37 37 H 1.08003 * 119.92308 * 179.97438 * 11 10 9 38 38 H 1.09001 * 109.47243 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.47611 * 300.00206 * 14 13 12 40 40 H 1.09004 * 109.46913 * 60.00370 * 14 13 12 41 41 H 1.09004 * 109.46990 * 299.99834 * 15 13 12 42 42 H 1.09002 * 109.47217 * 59.99880 * 15 13 12 43 43 H 1.09001 * 109.47496 * 180.02562 * 15 13 12 44 44 H 1.07994 * 119.92598 * 179.70563 * 17 12 11 45 45 H 1.07995 * 120.07418 * 180.25970 * 18 17 12 46 46 H 0.96997 * 120.00186 * 94.99967 * 19 2 1 47 47 H 0.96993 * 119.99865 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 7 4.0531 -1.3033 -2.5102 7 6 5.3740 -1.3393 -2.7755 8 8 6.1601 -0.7988 -2.0222 9 6 5.8667 -2.0352 -3.9832 10 6 7.2341 -2.0740 -4.2612 11 6 7.6872 -2.7246 -5.3902 12 6 6.7895 -3.3374 -6.2463 13 15 7.3940 -4.1900 -7.7289 14 6 6.1279 -4.1045 -9.0378 15 6 7.7374 -5.9351 -7.3289 16 8 8.6362 -3.5383 -8.2009 17 6 5.4324 -3.2974 -5.9799 18 6 4.9665 -2.6551 -4.8513 19 7 2.0184 -0.6906 1.1961 20 6 2.1492 -0.0075 2.3758 21 1 1.8919 1.0403 2.4243 22 6 2.6124 -0.6617 3.5090 23 7 2.9255 -1.9388 3.4499 24 14 2.7902 0.2700 5.1182 25 1 1.5226 0.1777 5.8863 26 1 3.8953 -0.3225 5.9138 27 1 3.0940 1.6955 4.8339 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.6053 -0.2617 -2.1370 32 1 1.7517 -1.7714 -1.2056 33 1 3.9995 -1.0727 -0.4260 34 1 3.8531 0.4371 -1.3573 35 1 3.4258 -1.7342 -3.1115 36 1 7.9357 -1.5956 -3.5938 37 1 8.7449 -2.7549 -5.6065 38 1 6.4913 -4.6164 -9.9288 39 1 5.2130 -4.5844 -8.6903 40 1 5.9226 -3.0610 -9.2770 41 1 8.4944 -5.9862 -6.5463 42 1 6.8225 -6.4150 -6.9813 43 1 8.1011 -6.4474 -8.2196 44 1 4.7367 -3.7737 -6.6548 45 1 3.9073 -2.6282 -4.6423 46 1 2.2491 -1.6317 1.1526 47 1 3.2488 -2.3960 4.2418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567240683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:52 Heat of formation + Delta-G solvation = -93.911739 kcal Electronic energy + Delta-G solvation = -25673.581038 eV Core-core repulsion = 21934.019693 eV Total energy + Delta-G solvation = -3739.561345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.34872 -39.36381 -38.15960 -36.02399 -34.25982 -33.92114 -32.46581 -32.19449 -30.91459 -29.75410 -29.41855 -28.43884 -26.01242 -25.24723 -24.00045 -23.34564 -21.94684 -21.19289 -19.45885 -19.11913 -17.81310 -17.32177 -16.99105 -16.49105 -16.06354 -15.87397 -15.72560 -15.68022 -15.34795 -15.01593 -14.71478 -14.59001 -14.44311 -14.27007 -14.15918 -14.02442 -13.80504 -13.66122 -13.59414 -13.27659 -12.99070 -12.84571 -12.80147 -12.67194 -12.56840 -12.34805 -12.29783 -12.21297 -12.15933 -11.69623 -11.63602 -11.19361 -10.96029 -10.70039 -10.59733 -10.47029 -10.15086 -10.13372 -9.00488 -7.95396 -5.22097 -0.57489 0.22249 0.74577 1.43853 1.45603 1.53432 1.58257 1.98134 2.54748 2.60929 3.38911 3.51313 3.60354 3.79012 3.83433 3.87513 3.94279 3.99008 4.14739 4.16367 4.21738 4.25317 4.27452 4.32150 4.53214 4.62132 4.63040 4.68909 4.71575 4.83745 4.85510 4.96962 4.98146 5.05267 5.07345 5.14842 5.17947 5.19783 5.25945 5.32003 5.36763 5.51826 5.59240 5.73829 6.27838 6.39048 6.73200 7.05318 7.33783 8.11619 8.32486 9.28123 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021276 B = 0.001893 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.723029 B =14785.998358 C =15392.131901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.042 0.958 4 C -0.115 4.115 5 C 0.131 3.869 6 N -0.704 5.704 7 C 0.540 3.460 8 O -0.583 6.583 9 C -0.116 4.116 10 C -0.102 4.102 11 C -0.056 4.056 12 C -0.705 4.705 13 P 2.624 2.376 14 C -0.831 4.831 15 C -0.828 4.828 16 O -1.052 7.052 17 C -0.078 4.078 18 C -0.105 4.105 19 N -0.735 5.735 20 C -0.232 4.232 21 H 0.074 0.926 22 C -0.080 4.080 23 N -0.970 5.970 24 Si 0.967 3.033 25 H -0.286 1.286 26 H -0.299 1.299 27 H -0.272 1.272 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.032 0.968 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.053 0.947 35 H 0.416 0.584 36 H 0.126 0.874 37 H 0.165 0.835 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.179 0.821 45 H 0.159 0.841 46 H 0.371 0.629 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.401 -7.694 -30.712 31.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 H 0.061 0.939 4 C -0.153 4.153 5 C 0.007 3.993 6 N -0.356 5.356 7 C 0.328 3.672 8 O -0.464 6.464 9 C -0.119 4.119 10 C -0.121 4.121 11 C -0.073 4.073 12 C -0.694 4.694 13 P 2.691 2.309 14 C -0.875 4.875 15 C -0.873 4.873 16 O -1.152 7.152 17 C -0.096 4.096 18 C -0.124 4.124 19 N -0.376 5.376 20 C -0.364 4.364 21 H 0.092 0.908 22 C -0.272 4.272 23 N -0.621 5.621 24 Si 0.797 3.203 25 H -0.213 1.213 26 H -0.226 1.226 27 H -0.197 1.197 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.126 0.874 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.255 0.745 36 H 0.144 0.856 37 H 0.182 0.818 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.134 0.866 44 H 0.196 0.804 45 H 0.176 0.824 46 H 0.203 0.797 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.154 -7.535 -29.768 30.783 hybrid contribution -0.744 -0.400 1.950 2.125 sum 1.410 -7.935 -27.819 28.962 Atomic orbital electron populations 1.22257 0.96956 1.01105 1.00935 1.20467 0.93275 0.95205 0.85601 0.93948 1.21926 0.92020 1.02271 0.99129 1.21188 0.95705 0.96216 0.86163 1.45808 1.06856 1.56090 1.26827 1.18901 0.82754 0.79833 0.85663 1.90791 1.56685 1.47852 1.51077 1.20189 0.95730 1.00859 0.95164 1.21586 0.94567 0.97940 0.97961 1.21259 1.01691 0.92952 0.91442 1.33682 1.00700 1.13190 1.21873 0.87895 0.50664 0.47341 0.45027 1.31970 1.21968 1.10647 1.22936 1.31975 1.10593 1.33124 1.11611 1.95040 1.55437 1.80510 1.84224 1.21511 0.94830 0.96606 0.96611 1.21761 1.00385 0.96050 0.94169 1.42650 1.78404 1.10229 1.06308 1.19598 1.34279 0.94113 0.88436 0.90784 1.25503 1.03354 0.96922 1.01405 1.69804 1.52969 1.10169 1.29198 0.85226 0.76825 0.78048 0.80240 1.21295 1.22638 1.19656 0.90502 0.93560 0.94857 0.87420 0.90765 0.94363 0.92813 0.74514 0.85623 0.81793 0.86648 0.86653 0.86955 0.87517 0.87393 0.86611 0.80423 0.82401 0.79668 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.85 9.49 71.98 0.68 -4.17 16 2 C 0.16 5.95 2.89 45.00 0.13 6.08 16 3 H 0.04 1.61 8.08 -2.39 -0.02 1.59 16 4 C -0.12 -3.16 4.87 30.60 0.15 -3.01 16 5 C 0.13 4.34 5.56 86.38 0.48 4.82 16 6 N -0.70 -18.45 5.51 -465.98 -2.57 -21.02 16 7 C 0.54 17.03 7.77 86.79 0.67 17.71 16 8 O -0.58 -24.60 16.35 -3.88 -0.06 -24.66 16 9 C -0.12 -2.77 5.87 -20.09 -0.12 -2.88 16 10 C -0.10 -2.39 9.60 22.53 0.22 -2.17 16 11 C -0.06 -0.95 9.67 22.23 0.22 -0.73 16 12 C -0.70 -7.89 6.19 22.33 0.14 -7.75 16 13 P 2.62 17.12 5.23 -40.88 -0.21 16.90 16 14 C -0.83 -3.07 10.53 113.37 1.19 -1.88 16 15 C -0.83 -5.00 11.06 113.37 1.25 -3.74 16 16 O -1.05 -17.34 18.40 -41.20 -0.76 -18.10 16 17 C -0.08 -0.73 9.56 22.23 0.21 -0.52 16 18 C -0.11 -1.54 9.54 22.53 0.21 -1.33 16 19 N -0.74 -36.15 4.57 -322.95 -1.48 -37.63 16 20 C -0.23 -12.93 9.93 84.03 0.83 -12.09 16 21 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 22 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 23 N -0.97 -60.54 13.06 21.65 0.28 -60.26 16 24 Si 0.97 47.46 29.55 68.60 2.03 49.49 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 26 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 27 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.04 1.66 7.75 -2.39 -0.02 1.64 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.42 7.05 6.51 -92.71 -0.60 6.44 16 36 H 0.13 3.29 7.65 -2.91 -0.02 3.26 16 37 H 0.16 2.16 8.03 -2.91 -0.02 2.14 16 38 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.11 -0.14 7.64 -2.39 -0.02 -0.16 16 40 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.11 0.28 8.14 -2.39 -0.02 0.27 16 43 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.18 -0.12 7.25 -2.91 -0.02 -0.14 16 45 H 0.16 1.31 6.41 -2.91 -0.02 1.29 16 46 H 0.37 19.77 7.80 -92.71 -0.72 19.05 16 47 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -87.77 404.83 3.62 -84.15 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -0.35 Total: 27.01 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 6.74 Total: -15.88 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -3.76 Total: -118.91 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -0.82 Total: -42.76 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Atomic # 15 Polarization: 17.12 SS G_CDS: -0.21 Total: 16.90 kcal Total: -87.77 3.62 -84.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567240683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.762 kcal (2) G-P(sol) polarization free energy of solvation -87.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds