Wall clock time and date at job start Tue Mar 31 2020 20:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47044 * 2 1 4 4 C 1.53001 * 109.46818 * 119.99990 * 2 1 3 5 5 C 1.53004 * 109.46847 * 184.99923 * 4 2 1 6 6 N 1.46500 * 109.46784 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99699 * 180.02562 * 6 5 4 8 8 O 1.21552 * 119.99819 * 359.97438 * 7 6 5 9 9 C 1.47844 * 119.99872 * 180.02562 * 7 6 5 10 10 C 1.39583 * 120.14472 * 179.97438 * 9 7 6 11 11 C 1.37956 * 119.85210 * 180.02562 * 10 9 7 12 12 C 1.38358 * 120.14645 * 0.02562 * 11 10 9 13 13 P 1.81399 * 119.85210 * 179.97438 * 12 11 10 14 14 C 1.82300 * 109.47008 * 209.99962 * 13 12 11 15 15 C 1.82295 * 109.47272 * 90.00115 * 13 12 11 16 16 O 1.48006 * 109.47080 * 329.99704 * 13 12 11 17 17 C 1.38360 * 120.29367 * 0.27179 * 12 11 10 18 18 C 1.37963 * 120.14326 * 359.44812 * 17 12 11 19 19 N 1.46499 * 109.46927 * 239.99974 * 2 1 3 20 20 C 1.36935 * 120.00106 * 85.00281 * 19 2 1 21 21 H 1.08001 * 119.99677 * 359.97438 * 20 19 2 22 22 C 1.38803 * 120.00269 * 179.97438 * 20 19 2 23 23 N 1.31622 * 120.00174 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 120.00366 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46589 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47063 * 120.00091 * 24 22 20 27 27 H 1.48492 * 109.47220 * 240.00190 * 24 22 20 28 28 H 1.09004 * 109.46963 * 60.00243 * 1 2 3 29 29 H 1.09006 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47568 * 299.99946 * 1 2 3 31 31 H 1.09007 * 109.46781 * 65.00238 * 4 2 1 32 32 H 1.08993 * 109.47088 * 305.00370 * 4 2 1 33 33 H 1.08999 * 109.46574 * 60.00491 * 5 4 2 34 34 H 1.08997 * 109.46796 * 300.00376 * 5 4 2 35 35 H 0.96994 * 120.00314 * 0.02562 * 6 5 4 36 36 H 1.08002 * 120.06740 * 0.02562 * 10 9 7 37 37 H 1.08003 * 119.92308 * 179.97438 * 11 10 9 38 38 H 1.09001 * 109.47243 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.47611 * 300.00206 * 14 13 12 40 40 H 1.09004 * 109.46913 * 60.00370 * 14 13 12 41 41 H 1.09004 * 109.46990 * 299.99834 * 15 13 12 42 42 H 1.09002 * 109.47217 * 59.99880 * 15 13 12 43 43 H 1.09001 * 109.47496 * 180.02562 * 15 13 12 44 44 H 1.07994 * 119.92598 * 179.70563 * 17 12 11 45 45 H 1.07995 * 120.07418 * 180.25970 * 18 17 12 46 46 H 0.96995 * 120.00160 * 264.99918 * 19 2 1 47 47 H 0.97004 * 120.00437 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 7 4.0531 -1.3045 2.5096 7 6 5.3740 -1.3399 2.7752 8 8 6.1600 -0.7988 2.0223 9 6 5.8668 -2.0379 3.9818 10 6 7.2342 -2.0769 4.2596 11 6 7.6875 -2.7304 5.3868 12 6 6.7902 -3.3466 6.2409 13 15 7.3951 -4.2041 7.7205 14 6 6.2706 -5.5800 8.1277 15 6 7.4560 -3.0352 9.1180 16 8 8.7520 -4.7359 7.4624 17 6 5.4340 -3.3169 5.9681 18 6 4.9670 -2.6619 4.8473 19 7 2.0183 -0.6906 -1.1962 20 6 2.1491 -0.0075 -2.3757 21 1 1.8919 1.0403 -2.4243 22 6 2.6123 -0.6617 -3.5090 23 7 2.9253 -1.9388 -3.4499 24 14 2.7901 0.2700 -5.1183 25 1 2.3752 1.6822 -4.9210 26 1 4.2070 0.2280 -5.5607 27 1 1.9298 -0.3593 -6.1522 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7516 -1.7716 1.2055 32 1 1.6053 -0.2618 2.1369 33 1 3.8531 0.4369 1.3574 34 1 3.9994 -1.0728 0.4260 35 1 3.4259 -1.7365 3.1102 36 1 7.9356 -1.5966 3.5934 37 1 8.7453 -2.7616 5.6026 38 1 6.6343 -6.0956 9.0165 39 1 5.2712 -5.1885 8.3177 40 1 6.2342 -6.2789 7.2921 41 1 8.1284 -2.2125 8.8745 42 1 6.4567 -2.6436 9.3081 43 1 7.8199 -3.5504 10.0070 44 1 4.7393 -3.8039 6.6363 45 1 3.9079 -2.6358 4.6377 46 1 2.2490 -1.6317 -1.1526 47 1 3.2493 -2.3959 -4.2418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567240690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:59 Heat of formation + Delta-G solvation = -66.035422 kcal Electronic energy + Delta-G solvation = -25671.330487 eV Core-core repulsion = 21932.977950 eV Total energy + Delta-G solvation = -3738.352537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -40.31960 -38.45332 -36.63598 -34.56333 -33.39245 -32.41391 -31.59262 -31.44647 -29.45100 -29.14719 -28.17819 -28.08122 -24.57918 -23.69388 -23.15734 -22.27454 -20.73503 -19.80435 -18.41499 -17.30861 -17.03741 -16.25679 -15.51332 -15.27347 -15.22921 -15.02799 -14.79740 -14.30759 -14.16554 -14.04404 -13.94992 -13.87809 -13.53244 -13.52542 -13.38644 -13.30958 -12.89970 -12.59177 -12.54060 -12.36492 -12.09214 -11.93850 -11.65129 -11.55664 -11.16409 -10.96677 -10.79069 -10.67590 -10.34754 -10.16607 -10.08267 -10.03708 -9.83905 -9.66373 -9.63521 -9.47060 -8.98654 -8.89387 -6.97455 -5.76669 -3.05767 0.19133 0.88587 1.09113 2.55464 3.09938 3.44139 3.47874 3.49697 3.51992 4.05273 4.19171 4.24405 4.38782 4.40150 4.47721 4.52559 4.59469 4.80148 4.86452 4.95866 5.04484 5.18404 5.27584 5.32366 5.40426 5.46884 5.48787 5.52208 5.60761 5.63694 5.76215 5.81862 5.92684 5.99664 6.11999 6.26967 6.33528 6.37308 6.41126 6.57417 6.63934 6.81421 7.01419 7.11065 7.46608 7.70931 8.16434 8.41429 9.52965 10.08852 10.43330 11.45923 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.001890 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.136529 B =14809.770092 C =15385.838542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.133 4.133 5 C 0.121 3.879 6 N -0.721 5.721 7 C 0.545 3.455 8 O -0.524 6.524 9 C -0.090 4.090 10 C -0.078 4.078 11 C -0.046 4.046 12 C -0.713 4.713 13 P 2.557 2.443 14 C -0.810 4.810 15 C -0.808 4.808 16 O -1.001 7.001 17 C -0.083 4.083 18 C -0.106 4.106 19 N -0.724 5.724 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.292 1.292 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.395 0.605 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.383 0.617 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 -4.466 29.015 29.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.171 4.171 5 C -0.002 4.002 6 N -0.372 5.372 7 C 0.331 3.669 8 O -0.401 6.401 9 C -0.093 4.093 10 C -0.097 4.097 11 C -0.063 4.063 12 C -0.702 4.702 13 P 2.627 2.373 14 C -0.855 4.855 15 C -0.853 4.853 16 O -1.105 7.105 17 C -0.101 4.101 18 C -0.125 4.125 19 N -0.366 5.366 20 C -0.370 4.370 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.220 1.220 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.230 0.770 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.108 0.892 43 H 0.127 0.873 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.217 0.783 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.029 -3.587 28.452 28.959 hybrid contribution -1.473 0.279 -0.536 1.592 sum 2.556 -3.308 27.917 28.228 Atomic orbital electron populations 1.22427 0.99096 1.00833 0.99996 1.20147 0.91916 0.95589 0.85960 0.93235 1.22072 0.93720 1.01864 0.99481 1.21537 0.94569 0.97253 0.86814 1.46064 1.06841 1.56613 1.27677 1.18259 0.82825 0.80626 0.85194 1.90831 1.55241 1.45201 1.48847 1.20365 0.94911 0.98725 0.95283 1.21570 0.94645 0.96638 0.96820 1.21040 1.00207 0.92673 0.92426 1.33224 1.00386 1.14143 1.22495 0.89783 0.53199 0.47799 0.46538 1.31853 1.17834 1.24358 1.11488 1.31837 1.08395 1.20466 1.24621 1.95069 1.46002 1.82114 1.87272 1.20899 0.94210 0.97589 0.97401 1.21417 0.99577 0.96958 0.94551 1.42455 1.78099 1.10644 1.05357 1.19257 1.36520 0.93881 0.87298 0.91137 1.24739 1.02110 0.95980 0.98105 1.69663 1.50869 1.08670 1.28820 0.86139 0.77350 0.78777 0.84054 1.20582 1.21836 1.21954 0.92648 0.93528 0.94602 0.91572 0.91945 0.91508 0.89367 0.77043 0.83694 0.83142 0.87221 0.89173 0.86879 0.87031 0.89161 0.87333 0.85345 0.85124 0.78305 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.49 37.16 0.35 -2.44 16 2 C 0.17 3.27 2.89 -67.93 -0.20 3.08 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.96 4.87 -26.73 -0.13 -2.09 16 5 C 0.12 1.97 5.56 -4.04 -0.02 1.94 16 6 N -0.72 -9.62 5.51 -61.25 -0.34 -9.96 16 7 C 0.55 8.27 7.77 -12.33 -0.10 8.17 16 8 O -0.52 -10.22 16.35 5.32 0.09 -10.13 16 9 C -0.09 -1.07 5.87 -104.96 -0.62 -1.68 16 10 C -0.08 -0.87 9.60 -39.18 -0.38 -1.25 16 11 C -0.05 -0.40 9.67 -39.64 -0.38 -0.78 16 12 C -0.71 -4.87 6.19 -39.49 -0.24 -5.12 16 13 P 2.56 11.66 5.23 -42.89 -0.22 11.43 16 14 C -0.81 -3.17 10.53 101.05 1.06 -2.11 16 15 C -0.81 -3.22 11.06 101.05 1.12 -2.10 16 16 O -1.00 -9.02 18.40 21.61 0.40 -8.62 16 17 C -0.08 -0.55 9.56 -39.64 -0.38 -0.93 16 18 C -0.11 -0.93 9.54 -39.18 -0.37 -1.30 16 19 N -0.72 -17.54 4.57 -53.43 -0.24 -17.78 16 20 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 24 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 1.81 7.75 -51.93 -0.40 1.41 16 35 H 0.39 3.85 6.51 -40.82 -0.27 3.58 16 36 H 0.15 1.65 7.65 -52.49 -0.40 1.25 16 37 H 0.15 0.98 8.03 -52.48 -0.42 0.56 16 38 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.19 7.64 -51.93 -0.40 -0.21 16 40 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.13 0.37 7.25 -52.49 -0.38 -0.01 16 45 H 0.13 0.82 6.41 -52.49 -0.34 0.49 16 46 H 0.38 9.93 7.80 -40.82 -0.32 9.61 16 47 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 404.83 15.07 6.10 6.10 Total: -1.00 -38.00 404.83 -6.59 -44.59 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.54 Total: 8.05 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -0.53 Total: -13.79 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.14 Total: -55.25 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.48 Total: -18.75 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Atomic # 15 Polarization: 11.66 SS G_CDS: -0.22 Total: 11.43 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -38.00 -6.59 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567240690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.444 kcal (2) G-P(sol) polarization free energy of solvation -38.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds