Wall clock time and date at job start Tue Mar 31 2020 20:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47044 * 2 1 4 4 C 1.53001 * 109.46818 * 119.99990 * 2 1 3 5 5 C 1.53004 * 109.46847 * 184.99923 * 4 2 1 6 6 N 1.46500 * 109.46784 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99699 * 180.02562 * 6 5 4 8 8 O 1.21552 * 119.99819 * 359.97438 * 7 6 5 9 9 C 1.47844 * 119.99872 * 180.02562 * 7 6 5 10 10 C 1.39583 * 120.14472 * 179.97438 * 9 7 6 11 11 C 1.37956 * 119.85210 * 180.02562 * 10 9 7 12 12 C 1.38358 * 120.14645 * 0.02562 * 11 10 9 13 13 P 1.81399 * 119.85210 * 179.97438 * 12 11 10 14 14 C 1.82300 * 109.47008 * 209.99962 * 13 12 11 15 15 C 1.82295 * 109.47272 * 90.00115 * 13 12 11 16 16 O 1.48006 * 109.47080 * 329.99704 * 13 12 11 17 17 C 1.38360 * 120.29367 * 0.27179 * 12 11 10 18 18 C 1.37963 * 120.14326 * 359.44812 * 17 12 11 19 19 N 1.46499 * 109.46927 * 239.99974 * 2 1 3 20 20 C 1.36935 * 120.00106 * 85.00281 * 19 2 1 21 21 H 1.08001 * 119.99677 * 359.97438 * 20 19 2 22 22 C 1.38803 * 120.00269 * 179.97438 * 20 19 2 23 23 N 1.31622 * 120.00174 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 120.00366 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46589 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47063 * 120.00091 * 24 22 20 27 27 H 1.48492 * 109.47220 * 240.00190 * 24 22 20 28 28 H 1.09004 * 109.46963 * 60.00243 * 1 2 3 29 29 H 1.09006 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47568 * 299.99946 * 1 2 3 31 31 H 1.09007 * 109.46781 * 65.00238 * 4 2 1 32 32 H 1.08993 * 109.47088 * 305.00370 * 4 2 1 33 33 H 1.08999 * 109.46574 * 60.00491 * 5 4 2 34 34 H 1.08997 * 109.46796 * 300.00376 * 5 4 2 35 35 H 0.96994 * 120.00314 * 0.02562 * 6 5 4 36 36 H 1.08002 * 120.06740 * 0.02562 * 10 9 7 37 37 H 1.08003 * 119.92308 * 179.97438 * 11 10 9 38 38 H 1.09001 * 109.47243 * 179.97438 * 14 13 12 39 39 H 1.09002 * 109.47611 * 300.00206 * 14 13 12 40 40 H 1.09004 * 109.46913 * 60.00370 * 14 13 12 41 41 H 1.09004 * 109.46990 * 299.99834 * 15 13 12 42 42 H 1.09002 * 109.47217 * 59.99880 * 15 13 12 43 43 H 1.09001 * 109.47496 * 180.02562 * 15 13 12 44 44 H 1.07994 * 119.92598 * 179.70563 * 17 12 11 45 45 H 1.07995 * 120.07418 * 180.25970 * 18 17 12 46 46 H 0.96995 * 120.00160 * 264.99918 * 19 2 1 47 47 H 0.97004 * 120.00437 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 7 4.0531 -1.3045 2.5096 7 6 5.3740 -1.3399 2.7752 8 8 6.1600 -0.7988 2.0223 9 6 5.8668 -2.0379 3.9818 10 6 7.2342 -2.0769 4.2596 11 6 7.6875 -2.7304 5.3868 12 6 6.7902 -3.3466 6.2409 13 15 7.3951 -4.2041 7.7205 14 6 6.2706 -5.5800 8.1277 15 6 7.4560 -3.0352 9.1180 16 8 8.7520 -4.7359 7.4624 17 6 5.4340 -3.3169 5.9681 18 6 4.9670 -2.6619 4.8473 19 7 2.0183 -0.6906 -1.1962 20 6 2.1491 -0.0075 -2.3757 21 1 1.8919 1.0403 -2.4243 22 6 2.6123 -0.6617 -3.5090 23 7 2.9253 -1.9388 -3.4499 24 14 2.7901 0.2700 -5.1183 25 1 2.3752 1.6822 -4.9210 26 1 4.2070 0.2280 -5.5607 27 1 1.9298 -0.3593 -6.1522 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7516 -1.7716 1.2055 32 1 1.6053 -0.2618 2.1369 33 1 3.8531 0.4369 1.3574 34 1 3.9994 -1.0728 0.4260 35 1 3.4259 -1.7365 3.1102 36 1 7.9356 -1.5966 3.5934 37 1 8.7453 -2.7616 5.6026 38 1 6.6343 -6.0956 9.0165 39 1 5.2712 -5.1885 8.3177 40 1 6.2342 -6.2789 7.2921 41 1 8.1284 -2.2125 8.8745 42 1 6.4567 -2.6436 9.3081 43 1 7.8199 -3.5504 10.0070 44 1 4.7393 -3.8039 6.6363 45 1 3.9079 -2.6358 4.6377 46 1 2.2490 -1.6317 -1.1526 47 1 3.2493 -2.3959 -4.2418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567240690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:58 Heat of formation + Delta-G solvation = -93.880602 kcal Electronic energy + Delta-G solvation = -25672.537944 eV Core-core repulsion = 21932.977950 eV Total energy + Delta-G solvation = -3739.559995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.34894 -39.36400 -38.15892 -36.02378 -34.25813 -33.92034 -32.46587 -32.19471 -30.91340 -29.75312 -29.41775 -28.43704 -26.01188 -25.24735 -24.00058 -23.34572 -21.94685 -21.19209 -19.45757 -19.11848 -17.81306 -17.32200 -16.99160 -16.48975 -16.06387 -15.87439 -15.72286 -15.67485 -15.34912 -15.01738 -14.71400 -14.58493 -14.45365 -14.25366 -14.15990 -14.02800 -13.80762 -13.65768 -13.59292 -13.27408 -12.98933 -12.88314 -12.80143 -12.66720 -12.56826 -12.34010 -12.29009 -12.20261 -12.12642 -11.69328 -11.63566 -11.19332 -10.97217 -10.70086 -10.59502 -10.46968 -10.15087 -10.13375 -9.00231 -7.95090 -5.21907 -0.57504 0.22194 0.74185 1.43787 1.45467 1.54370 1.58159 1.98111 2.54879 2.60852 3.39304 3.51351 3.60334 3.78978 3.83497 3.87583 3.94266 3.99028 4.14903 4.16432 4.21801 4.25435 4.27566 4.32300 4.53220 4.62188 4.62928 4.68933 4.71534 4.83808 4.85522 4.96992 4.98185 5.05275 5.07313 5.14916 5.18241 5.19786 5.25912 5.32006 5.36844 5.52221 5.59433 5.73817 6.28133 6.39031 6.73226 7.05302 7.34034 8.11857 8.32630 9.28554 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.001890 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.136529 B =14809.770092 C =15385.838542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.163 3.837 3 H 0.043 0.957 4 C -0.115 4.115 5 C 0.131 3.869 6 N -0.704 5.704 7 C 0.540 3.460 8 O -0.583 6.583 9 C -0.116 4.116 10 C -0.102 4.102 11 C -0.056 4.056 12 C -0.705 4.705 13 P 2.624 2.376 14 C -0.831 4.831 15 C -0.827 4.827 16 O -1.054 7.054 17 C -0.078 4.078 18 C -0.105 4.105 19 N -0.735 5.735 20 C -0.231 4.231 21 H 0.075 0.925 22 C -0.080 4.080 23 N -0.970 5.970 24 Si 0.966 3.034 25 H -0.266 1.266 26 H -0.299 1.299 27 H -0.293 1.293 28 H 0.032 0.968 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.054 0.946 34 H 0.037 0.963 35 H 0.416 0.584 36 H 0.126 0.874 37 H 0.165 0.835 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.178 0.822 45 H 0.159 0.841 46 H 0.371 0.629 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.067 -4.752 32.535 32.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.055 3.945 3 H 0.061 0.939 4 C -0.154 4.154 5 C 0.007 3.993 6 N -0.356 5.356 7 C 0.328 3.672 8 O -0.464 6.464 9 C -0.119 4.119 10 C -0.121 4.121 11 C -0.073 4.073 12 C -0.694 4.694 13 P 2.690 2.310 14 C -0.876 4.876 15 C -0.872 4.872 16 O -1.153 7.153 17 C -0.096 4.096 18 C -0.124 4.124 19 N -0.376 5.376 20 C -0.363 4.363 21 H 0.093 0.907 22 C -0.272 4.272 23 N -0.621 5.621 24 Si 0.796 3.204 25 H -0.190 1.190 26 H -0.227 1.227 27 H -0.220 1.220 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.255 0.745 36 H 0.144 0.856 37 H 0.182 0.818 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.134 0.866 44 H 0.196 0.804 45 H 0.176 0.824 46 H 0.203 0.797 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.737 -3.864 32.040 32.318 hybrid contribution -0.798 0.388 -1.457 1.706 sum 0.939 -3.476 30.583 30.794 Atomic orbital electron populations 1.22258 0.96953 1.01106 1.00933 1.20469 0.93278 0.95200 0.85597 0.93932 1.21927 0.92015 1.02275 0.99134 1.21189 0.95706 0.96201 0.86181 1.45808 1.06864 1.56019 1.26891 1.18901 0.82750 0.79820 0.85679 1.90791 1.56676 1.47858 1.51082 1.20188 0.95736 1.00882 0.95137 1.21586 0.94546 0.98002 0.97920 1.21259 1.01543 0.92598 0.91945 1.33679 1.00624 1.12592 1.22522 0.87935 0.51469 0.46619 0.44998 1.31976 1.19447 1.24308 1.11821 1.31956 1.09720 1.20625 1.24876 1.95041 1.48914 1.83244 1.88127 1.21511 0.94795 0.96215 0.97045 1.21761 1.00398 0.95959 0.94245 1.42659 1.78387 1.10234 1.06325 1.19632 1.34198 0.94100 0.88413 0.90746 1.25508 1.03389 0.96915 1.01412 1.69812 1.52969 1.10164 1.29174 0.85162 0.76565 0.78333 0.80297 1.18984 1.22653 1.22039 0.94864 0.93561 0.90492 0.90786 0.87399 0.92771 0.94402 0.74514 0.85625 0.81794 0.86635 0.86578 0.87191 0.87384 0.87235 0.86650 0.80428 0.82402 0.79669 0.94293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 9.49 71.98 0.68 -4.16 16 2 C 0.16 5.94 2.89 44.99 0.13 6.07 16 3 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 4 C -0.12 -3.16 4.87 30.60 0.15 -3.01 16 5 C 0.13 4.33 5.56 86.38 0.48 4.81 16 6 N -0.70 -18.45 5.51 -465.98 -2.57 -21.01 16 7 C 0.54 17.03 7.77 86.79 0.67 17.71 16 8 O -0.58 -24.60 16.35 -3.88 -0.06 -24.67 16 9 C -0.12 -2.77 5.87 -20.09 -0.12 -2.89 16 10 C -0.10 -2.39 9.60 22.53 0.22 -2.17 16 11 C -0.06 -0.95 9.67 22.23 0.22 -0.73 16 12 C -0.70 -7.89 6.19 22.33 0.14 -7.75 16 13 P 2.62 17.14 5.23 -40.88 -0.21 16.93 16 14 C -0.83 -3.47 10.53 113.37 1.19 -2.28 16 15 C -0.83 -4.25 11.06 113.37 1.25 -3.00 16 16 O -1.05 -17.75 18.40 -41.20 -0.76 -18.51 16 17 C -0.08 -0.73 9.56 22.23 0.21 -0.52 16 18 C -0.11 -1.54 9.54 22.53 0.21 -1.33 16 19 N -0.74 -36.20 4.57 -322.95 -1.48 -37.67 16 20 C -0.23 -12.89 9.93 84.03 0.83 -12.06 16 21 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 22 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 23 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 24 Si 0.97 47.56 29.55 68.60 2.03 49.59 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 26 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 27 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 28 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.04 1.64 7.75 -2.39 -0.02 1.63 16 35 H 0.42 7.04 6.51 -92.71 -0.60 6.44 16 36 H 0.13 3.29 7.65 -2.91 -0.02 3.26 16 37 H 0.16 2.16 8.03 -2.91 -0.02 2.14 16 38 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.12 -0.12 7.64 -2.39 -0.02 -0.14 16 40 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.18 -0.12 7.25 -2.91 -0.02 -0.14 16 45 H 0.16 1.31 6.41 -2.91 -0.02 1.30 16 46 H 0.37 19.83 7.80 -92.71 -0.72 19.10 16 47 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -88.19 404.83 3.62 -84.57 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: -0.35 Total: 26.75 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 6.74 Total: -15.54 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -3.76 Total: -119.11 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -0.82 Total: -43.18 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Atomic # 15 Polarization: 17.14 SS G_CDS: -0.21 Total: 16.93 kcal Total: -88.19 3.62 -84.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567240690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.309 kcal (2) G-P(sol) polarization free energy of solvation -88.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds