Wall clock time and date at job start Tue Mar 31 2020 20:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47062 * 2 1 4 4 C 1.52998 * 109.47268 * 239.99865 * 2 1 3 5 5 C 1.50695 * 109.47055 * 65.00117 * 4 2 1 6 6 C 1.38265 * 119.99532 * 89.99945 * 5 4 2 7 7 C 1.38216 * 120.02522 * 179.97438 * 6 5 4 8 8 C 1.38238 * 120.01508 * 0.02562 * 7 6 5 9 9 C 1.38330 * 119.98552 * 359.97438 * 8 7 6 10 10 Cl 1.73599 * 120.01156 * 180.02562 * 9 8 7 11 11 C 1.38196 * 119.99111 * 269.72041 * 5 4 2 12 12 C 1.50708 * 109.46995 * 119.99695 * 2 1 3 13 13 O 1.21283 * 119.99636 * 104.74813 * 12 2 1 14 14 N 1.34769 * 119.99990 * 284.74802 * 12 2 1 15 15 C 1.46502 * 119.99894 * 185.68709 * 14 12 2 16 16 C 1.46497 * 120.00200 * 5.68650 * 14 12 2 17 17 H 1.08998 * 109.47027 * 6.28423 * 16 14 12 18 18 C 1.53000 * 109.47437 * 246.28365 * 16 14 12 19 19 C 1.53004 * 109.47222 * 126.28644 * 16 14 12 20 20 N 1.46508 * 109.46676 * 304.99935 * 19 16 14 21 21 C 1.36940 * 119.99478 * 179.97438 * 20 19 16 22 22 H 1.08000 * 120.00092 * 0.02562 * 21 20 19 23 23 C 1.38811 * 119.99427 * 179.97438 * 21 20 19 24 24 N 1.31618 * 120.00512 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99772 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47309 * 60.00324 * 25 23 21 27 27 H 1.48503 * 109.47014 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47528 * 300.00356 * 25 23 21 29 29 H 1.09005 * 109.46581 * 173.69224 * 1 2 3 30 30 H 1.08999 * 109.47558 * 293.68417 * 1 2 3 31 31 H 1.08994 * 109.47200 * 53.69070 * 1 2 3 32 32 H 1.09004 * 109.46703 * 184.99986 * 4 2 1 33 33 H 1.08998 * 109.47117 * 304.99641 * 4 2 1 34 34 H 1.07998 * 119.98423 * 359.97364 * 6 5 4 35 35 H 1.08004 * 119.98937 * 180.02562 * 7 6 5 36 36 H 1.07999 * 120.00363 * 179.97438 * 8 7 6 37 37 H 1.07993 * 120.00786 * 0.02562 * 11 5 4 38 38 H 1.09001 * 109.47129 * 275.22791 * 15 14 12 39 39 H 1.09004 * 109.47033 * 155.23025 * 15 14 12 40 40 H 1.08999 * 109.47089 * 35.22880 * 15 14 12 41 41 H 1.08995 * 109.47539 * 179.97438 * 18 16 14 42 42 H 1.08998 * 109.47060 * 300.00039 * 18 16 14 43 43 H 1.08997 * 109.46941 * 59.99731 * 18 16 14 44 44 H 1.08995 * 109.47141 * 64.99821 * 19 16 14 45 45 H 1.09005 * 109.47333 * 185.00398 * 19 16 14 46 46 H 0.96995 * 120.00138 * 359.97438 * 20 19 16 47 47 H 0.96999 * 120.00588 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 6 2.4818 1.0331 -2.9792 7 6 2.1170 1.7470 -4.1051 8 6 0.9114 1.4857 -4.7291 9 6 0.0703 0.5092 -4.2266 10 17 -1.4436 0.1801 -5.0100 11 6 0.4386 -0.2091 -3.1027 12 6 2.0323 -0.7104 1.2306 13 8 2.4865 -1.8313 1.1406 14 7 1.9768 -0.1000 2.4308 15 6 2.5772 -0.7376 3.6053 16 6 1.3161 1.2010 2.5612 17 1 0.8373 1.4615 1.6173 18 6 2.3542 2.2668 2.9177 19 6 0.2599 1.1283 3.6658 20 7 -0.6661 0.0284 3.3843 21 6 -1.7018 -0.2310 4.2417 22 1 -1.8363 0.3755 5.1252 23 6 -2.5795 -1.2728 3.9747 24 7 -2.4159 -2.0115 2.8978 25 14 -3.9928 -1.6262 5.1439 26 1 -4.8707 -0.4319 5.2346 27 1 -4.7776 -2.7806 4.6371 28 1 -3.4536 -1.9474 6.4897 29 1 -0.3633 -1.0215 -0.1129 30 1 -0.3634 0.4128 0.9411 31 1 -0.3633 0.6085 -0.8281 32 1 3.1264 -0.7994 -1.2054 33 1 1.6055 -1.7198 -1.2951 34 1 3.4235 1.2379 -2.4918 35 1 2.7741 2.5090 -4.4975 36 1 0.6264 2.0439 -5.6086 37 1 -0.2159 -0.9743 -2.7124 38 1 1.8657 -1.4385 4.0417 39 1 2.8341 0.0246 4.3409 40 1 3.4785 -1.2732 3.3070 41 1 1.8628 3.2349 3.0143 42 1 2.8330 2.0063 3.8616 43 1 3.1067 2.3187 2.1309 44 1 0.7484 0.9555 4.6247 45 1 -0.2922 2.0674 3.7031 46 1 -0.5455 -0.5160 2.5906 47 1 -3.0294 -2.7393 2.7110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568321419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:14 Heat of formation + Delta-G solvation = -12.425620 kcal Electronic energy + Delta-G solvation = -27864.207209 eV Core-core repulsion = 24072.893684 eV Total energy + Delta-G solvation = -3791.313525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.25423 -39.34487 -36.76983 -36.56569 -34.84684 -33.86679 -31.49011 -31.07930 -30.88577 -30.03439 -27.08205 -26.56370 -25.71187 -23.35263 -22.78191 -22.66443 -21.37579 -20.63325 -18.51433 -17.37635 -17.04074 -16.78417 -15.76200 -15.62508 -15.52171 -15.05257 -14.67258 -14.22516 -14.10459 -13.75866 -13.72399 -13.61184 -13.20003 -13.06659 -12.75702 -12.50681 -12.38239 -12.24141 -11.95817 -11.82336 -11.74821 -11.67234 -11.54064 -11.49316 -11.28711 -10.99499 -10.89223 -10.82576 -10.81676 -10.77871 -10.47414 -10.07501 -9.71356 -9.29045 -9.00440 -8.89671 -8.77670 -8.22718 -6.94195 -5.76254 -3.05981 1.00636 1.11469 2.02190 3.02158 3.32012 3.43555 3.48098 3.49454 3.52531 4.47711 4.57689 4.63964 4.82250 4.95093 4.97562 5.03164 5.09243 5.20402 5.25836 5.30839 5.43898 5.46572 5.50489 5.57146 5.70897 5.73174 5.85116 5.86255 5.90447 5.94912 6.05362 6.08783 6.11353 6.12612 6.15501 6.27578 6.30878 6.38238 6.43793 6.48210 6.62283 6.66208 6.73255 6.94450 7.68411 7.78768 8.41612 8.57408 9.53423 10.09420 10.44563 11.45725 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010045 B = 0.003541 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.813659 B = 7905.586390 C = 9672.211452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.101 4.101 3 H 0.089 0.911 4 C -0.063 4.063 5 C -0.059 4.059 6 C -0.114 4.114 7 C -0.108 4.108 8 C -0.119 4.119 9 C -0.032 4.032 10 Cl -0.073 7.073 11 C -0.102 4.102 12 C 0.522 3.478 13 O -0.545 6.545 14 N -0.595 5.595 15 C 0.093 3.907 16 C 0.113 3.887 17 H 0.098 0.902 18 C -0.160 4.160 19 C 0.141 3.859 20 N -0.729 5.729 21 C -0.245 4.245 22 H 0.069 0.931 23 C -0.009 4.009 24 N -0.928 5.928 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.287 1.287 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.023 0.977 45 H 0.030 0.970 46 H 0.387 0.613 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.627 10.093 -12.929 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.122 4.122 3 H 0.107 0.893 4 C -0.101 4.101 5 C -0.060 4.060 6 C -0.132 4.132 7 C -0.126 4.126 8 C -0.138 4.138 9 C -0.058 4.058 10 Cl -0.044 7.044 11 C -0.120 4.120 12 C 0.310 3.690 13 O -0.423 6.423 14 N -0.327 5.327 15 C -0.050 4.050 16 C 0.009 3.991 17 H 0.116 0.884 18 C -0.218 4.218 19 C 0.013 3.987 20 N -0.375 5.375 21 C -0.376 4.376 22 H 0.087 0.913 23 C -0.205 4.205 24 N -0.576 5.576 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.155 0.845 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.041 0.959 45 H 0.048 0.952 46 H 0.223 0.777 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.613 9.452 -12.893 19.759 hybrid contribution -1.064 -0.337 0.450 1.203 sum 10.549 9.115 -12.443 18.686 Atomic orbital electron populations 1.22064 0.91425 1.04036 1.03771 1.21254 0.98792 0.99927 0.92266 0.89267 1.20464 1.01702 0.98732 0.89167 1.19878 0.93517 0.96230 0.96327 1.21176 0.99898 0.95768 0.96391 1.21065 0.95996 0.99719 0.95811 1.21014 0.94290 0.97636 1.00868 1.20942 0.89029 0.99461 0.96404 1.98378 1.31095 1.94855 1.80109 1.21104 0.96885 1.00011 0.94049 1.20462 0.78084 0.86044 0.84410 1.90660 1.46865 1.18511 1.86234 1.47682 1.56221 1.20606 1.08239 1.21496 0.98149 0.97918 0.87394 1.21708 0.93216 0.82365 1.01763 0.88449 1.22123 0.99069 0.98684 1.01966 1.21026 0.90194 0.92824 0.94687 1.42380 1.30746 1.35256 1.29099 1.19139 1.03616 1.11734 1.03147 0.91320 1.24722 0.99505 0.98403 0.97913 1.69644 1.39281 1.21884 1.26783 0.86300 0.82352 0.77406 0.80271 1.21296 1.21698 1.21346 0.91095 0.89948 0.91875 0.90298 0.89459 0.85468 0.85265 0.85256 0.84532 0.91868 0.91640 0.91907 0.91320 0.92136 0.92576 0.95910 0.95229 0.77742 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 7.94 37.16 0.29 -2.19 16 2 C -0.10 -1.43 1.85 -91.77 -0.17 -1.60 16 3 H 0.09 1.07 7.34 -51.93 -0.38 0.69 16 4 C -0.06 -0.81 4.17 -27.89 -0.12 -0.92 16 5 C -0.06 -0.67 4.71 -104.63 -0.49 -1.16 16 6 C -0.11 -1.09 9.70 -39.58 -0.38 -1.48 16 7 C -0.11 -0.93 10.05 -39.59 -0.40 -1.33 16 8 C -0.12 -1.14 9.83 -39.55 -0.39 -1.53 16 9 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 16 10 Cl -0.07 -0.83 28.96 -51.86 -1.50 -2.33 16 11 C -0.10 -1.22 7.93 -39.55 -0.31 -1.53 16 12 C 0.52 9.14 6.89 -10.99 -0.08 9.06 16 13 O -0.55 -11.29 15.82 5.55 0.09 -11.20 16 14 N -0.60 -9.84 2.20 -173.93 -0.38 -10.22 16 15 C 0.09 1.51 9.31 59.85 0.56 2.06 16 16 C 0.11 1.69 2.00 -67.93 -0.14 1.55 16 17 H 0.10 1.42 4.27 -51.93 -0.22 1.20 16 18 C -0.16 -1.78 9.27 37.16 0.34 -1.44 16 19 C 0.14 2.64 5.44 -4.04 -0.02 2.62 16 20 N -0.73 -17.69 5.15 -59.90 -0.31 -18.00 16 21 C -0.25 -6.72 9.99 -15.06 -0.15 -6.87 16 22 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 25 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.08 1.51 4.10 -51.93 -0.21 1.29 16 31 H 0.06 0.89 6.71 -51.93 -0.35 0.54 16 32 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 33 H 0.09 1.25 8.03 -51.93 -0.42 0.83 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 36 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.14 1.69 8.05 -52.49 -0.42 1.27 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 0.88 6.57 -51.93 -0.34 0.54 16 40 H 0.06 0.97 7.67 -51.93 -0.40 0.58 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.66 6.96 -51.93 -0.36 0.30 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.02 0.43 7.55 -51.93 -0.39 0.04 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.39 9.87 5.59 -40.82 -0.23 9.64 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 388.90 15.07 5.86 5.86 Total: -1.00 -32.24 388.90 -9.41 -41.65 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.07 Total: 9.76 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -1.80 Total: -5.71 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.03 Total: -55.34 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.24 -9.41 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568321419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.226 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds